RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ABCB6Q9NP58 842 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 CCDC87Q9NVE4 849 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 MYH15Q9Y2K3 1946 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 CHRM1P11229 460 aaPredicted RBP14.25□□□□□ -0.13
LIG1-201ENST00000263274 HEATR3Q7Z4Q2 680 aa14.25□□□□□ -0.13
LIG1-201ENST00000263274 PHF20Q9BVI0 1012 aa14.25□□□□□ -0.13
LIG1-201ENST00000263274 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.25□□□□□ -0.13
LIG1-201ENST00000263274 RNF225M0QZC1 329 aaPredicted RBP14.25□□□□□ -0.13
LIG1-201ENST00000263274 PRPF3O43395 683 aaKnown RBP14.25□□□□□ -0.13
LIG1-201ENST00000263274 TRPM3Q9HCF6 1732 aaPredicted RBP14.25□□□□□ -0.13
LIG1-201ENST00000263274 SEC23AQ15436 765 aa14.25□□□□□ -0.13
LIG1-201ENST00000263274 NT5DC1Q5TFE4 455 aa14.25□□□□□ -0.13
LIG1-201ENST00000263274 PNKPQ96T60 521 aa14.25□□□□□ -0.13
LIG1-201ENST00000263274 CPVLQ9H3G5 476 aa14.25□□□□□ -0.13
LIG1-201ENST00000263274 KAT14Q9H8E8 782 aa14.25□□□□□ -0.13
LIG1-201ENST00000263274 MKNK2Q9HBH9 465 aa14.25□□□□□ -0.13
LIG1-201ENST00000263274 HDAC6Q9UBN7 1215 aa14.25□□□□□ -0.13
LIG1-201ENST00000263274 KCPQ6ZWJ8 1503 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 COL5A2P05997 1499 aaPredicted RBP14.24□□□□□ -0.13
LIG1-201ENST00000263274 ERVV-1B6SEH8 477 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 SRGAP2O75044 1071 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 N4BP1O75113 896 aaKnown RBP14.24□□□□□ -0.13
LIG1-201ENST00000263274 TRIM21P19474 475 aaKnown RBP14.24□□□□□ -0.13
LIG1-201ENST00000263274 USP5P45974 858 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 TMTC1Q8IUR5 882 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 FUT8Q9BYC5 575 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 LUC7L2Q9Y383 392 aaKnown RBP14.24□□□□□ -0.13
LIG1-201ENST00000263274 ADAMTS3O15072 1205 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 BMP15O95972 392 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 RPN1P04843 607 aaKnown RBP14.24□□□□□ -0.13
LIG1-201ENST00000263274 SCG2P13521 617 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 CCDC178Q5BJE1 867 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 CCDC122Q5T0U0 273 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 CYP26C1Q6V0L0 522 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 RBM28Q9NW13 759 aaKnown RBP14.24□□□□□ -0.13
LIG1-201ENST00000263274 ADAM21Q9UKJ8 722 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 TTF2Q9UNY4 1162 aaKnown RBP14.24□□□□□ -0.13
LIG1-201ENST00000263274 MYO5AQ9Y4I1 1855 aaKnown RBP14.24□□□□□ -0.13
LIG1-201ENST00000263274 XDHP47989 1333 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 PNPLA7Q6ZV29 1317 aa14.24□□□□□ -0.13
LIG1-201ENST00000263274 PRCPP42785 496 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 ERVK-24P63145 666 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 FKBP15Q5T1M5 1219 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 RSRC2Q7L4I2 434 aaKnown RBP14.23□□□□□ -0.13
LIG1-201ENST00000263274 GOLGA6L1Q8N7Z2 621 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 FAM53CQ9NYF3 392 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 KIF1AQ12756 1690 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 MACROD2A1Z1Q3 448 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 GOLGA8HP0CJ92 632 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 MATR3P43243 847 aaKnown RBP eCLIP14.23□□□□□ -0.131e-9■■■■■ 38.3
LIG1-201ENST00000263274 INF2Q27J81 1249 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 ERFEQ4G0M1 354 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 CTR9Q6PD62 1173 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 LEKR1Q6ZMV7 388 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 TXLNBQ8N3L3 684 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 NAA15Q9BXJ9 866 aaKnown RBP14.23□□□□□ -0.13
LIG1-201ENST00000263274 ABHD10Q9NUJ1 306 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 EPN1Q9Y6I3 576 aaPredicted RBP14.23□□□□□ -0.13
LIG1-201ENST00000263274 CCDC151A5D8V7 595 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 H3BQF6 201 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 EIF3JO75822 258 aaKnown RBP14.23□□□□□ -0.13
LIG1-201ENST00000263274 PRDX5P30044 214 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 DNA2P51530 1060 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 TFAP4Q01664 338 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 TROAPQ12815 778 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 ZSCAN26Q16670 478 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 DTHD1Q6ZMT9 781 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 TMTC3Q6ZXV5 915 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 HDXQ7Z353 690 aa14.23□□□□□ -0.13
LIG1-201ENST00000263274 DZIP1Q86YF9 867 aaKnown RBP14.23□□□□□ -0.13
LIG1-201ENST00000263274 CRNKL1Q9BZJ0 848 aaKnown RBP14.23□□□□□ -0.13
LIG1-201ENST00000263274 USP17L8P0C7I0 530 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 KLRK1P26718 216 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 MTIF2P46199 727 aaKnown RBP14.22□□□□□ -0.13
LIG1-201ENST00000263274 VSNL1P62760 191 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 MRPS25P82663 173 aaKnown RBP14.22□□□□□ -0.13
LIG1-201ENST00000263274 STIM1Q13586 685 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 NOA1Q8NC60 698 aaKnown RBP14.22□□□□□ -0.13
LIG1-201ENST00000263274 DYNLL2Q96FJ2 89 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 PSMB7Q99436 277 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 JADE2Q9NQC1 790 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 ADAMTS7Q9UKP4 1686 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 PARP1P09874 1014 aaKnown RBP14.22□□□□□ -0.13
LIG1-201ENST00000263274 CALM1P0DP23 149 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 CALM2P0DP24 149 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 CALM3P0DP25 149 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 SPAG1Q07617 926 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 TCP11X2Q5H9J9 407 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 C10orf67Q8IYJ2 551 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 CCDC148Q8NFR7 591 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 UIMC1Q96RL1 719 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 ZNHIT6Q9NWK9 470 aaKnown RBP14.22□□□□□ -0.13
LIG1-201ENST00000263274 MYO6Q9UM54 1294 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 FAN1Q9Y2M0 1017 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 NAP1L1P55209 391 aaKnown RBP14.22□□□□□ -0.13
LIG1-201ENST00000263274 BRD3Q15059 726 aa14.22□□□□□ -0.13
LIG1-201ENST00000263274 LOC102724428A0A0B4J2F2 783 aa14.21□□□□□ -0.13
LIG1-201ENST00000263274 TTC26A0AVF1 554 aa14.21□□□□□ -0.13
LIG1-201ENST00000263274 GTPBP6O43824 516 aaPredicted RBP14.21□□□□□ -0.13
LIG1-201ENST00000263274 SIK1P57059 783 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms