RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 CALM2P0DP24 149 aa31.8■■■□□ 2.68
CHMP4B-201ENST00000217402 CALM3P0DP25 149 aa31.8■■■□□ 2.68
CHMP4B-201ENST00000217402 SNHG28P0DPA3 235 aa31.8■■■□□ 2.68
CHMP4B-201ENST00000217402 ZNF274Q96GC6 653 aaPredicted RBP31.8■■■□□ 2.68
CHMP4B-201ENST00000217402 TSHZ2Q9NRE2 1034 aa31.8■■■□□ 2.68
CHMP4B-201ENST00000217402 PARP1P09874 1014 aaKnown RBP31.79■■■□□ 2.68
CHMP4B-201ENST00000217402 BMP3P12645 472 aa31.79■■■□□ 2.68
CHMP4B-201ENST00000217402 HSPA6P17066 643 aa31.79■■■□□ 2.68
CHMP4B-201ENST00000217402 METAP2P50579 478 aaKnown RBP eCLIP31.79■■■□□ 2.68
CHMP4B-201ENST00000217402 MOGSQ13724 837 aa31.79■■■□□ 2.68
CHMP4B-201ENST00000217402 GRM4Q14833 912 aa31.79■■■□□ 2.68
CHMP4B-201ENST00000217402 ME3Q16798 604 aa31.79■■■□□ 2.68
CHMP4B-201ENST00000217402 TREML2Q5T2D2 321 aa31.79■■■□□ 2.68
CHMP4B-201ENST00000217402 PROCA1Q8NCQ7 364 aaPredicted RBP31.79■■■□□ 2.68
CHMP4B-201ENST00000217402 CTCFLQ8NI51 663 aaPredicted RBP31.79■■■□□ 2.68
CHMP4B-201ENST00000217402 RPAP3Q9H6T3 665 aaPredicted RBP31.79■■■□□ 2.68
CHMP4B-201ENST00000217402 GPCPD1Q9NPB8 672 aa31.79■■■□□ 2.68
CHMP4B-201ENST00000217402 LOC285556D6RIA3 1793 aa31.79■■■□□ 2.68
CHMP4B-201ENST00000217402 WDR46O15213 610 aaKnown RBP31.78■■■□□ 2.68
CHMP4B-201ENST00000217402 CCT2P78371 535 aaKnown RBP31.78■■■□□ 2.68
CHMP4B-201ENST00000217402 FASTKD5Q7L8L6 764 aaKnown RBP31.78■■■□□ 2.68
CHMP4B-201ENST00000217402 BRI3BPQ8WY22 251 aa31.78■■■□□ 2.68
CHMP4B-201ENST00000217402 TANGO6Q9C0B7 1094 aa31.78■■■□□ 2.68
CHMP4B-201ENST00000217402 MCM2P49736 904 aa31.78■■■□□ 2.68
CHMP4B-201ENST00000217402 ZNF543Q08ER8 600 aa31.78■■■□□ 2.68
CHMP4B-201ENST00000217402 STAG2Q8N3U4 1231 aa31.78■■■□□ 2.68
CHMP4B-201ENST00000217402 FANCBQ8NB91 859 aa31.78■■■□□ 2.68
CHMP4B-201ENST00000217402 MAD2L2Q9UI95 211 aa31.78■■■□□ 2.68
CHMP4B-201ENST00000217402 RTN1Q16799 776 aa31.77■■■□□ 2.68
CHMP4B-201ENST00000217402 SLKQ9H2G2 1235 aaPredicted RBP31.77■■■□□ 2.68
CHMP4B-201ENST00000217402 NCOA5Q9HCD5 579 aaKnown RBP31.77■■■□□ 2.68
CHMP4B-201ENST00000217402 RCAN1P53805 252 aa31.76■■■□□ 2.67
CHMP4B-201ENST00000217402 ASPRV1Q53RT3 343 aa31.76■■■□□ 2.67
CHMP4B-201ENST00000217402 NECAB1Q8N987 351 aa31.76■■■□□ 2.67
CHMP4B-201ENST00000217402 ZIC5Q96T25 663 aa31.76■■■□□ 2.67
CHMP4B-201ENST00000217402 MANSC4A6NHS7 340 aaPredicted RBP31.75■■■□□ 2.67
CHMP4B-201ENST00000217402 AOC2O75106 756 aa31.75■■■□□ 2.67
CHMP4B-201ENST00000217402 KIF5BP33176 963 aa31.75■■■□□ 2.67
CHMP4B-201ENST00000217402 TTBK2Q6IQ55 1244 aa31.75■■■□□ 2.67
CHMP4B-201ENST00000217402 SAMD1Q6SPF0 538 aaPredicted RBP31.75■■■□□ 2.67
CHMP4B-201ENST00000217402 MAP3K14Q99558 947 aa31.75■■■□□ 2.67
CHMP4B-201ENST00000217402 AGTPBP1Q9UPW5 1226 aa31.75■■■□□ 2.67
CHMP4B-201ENST00000217402 TMEM232C9JQI7 657 aa31.75■■■□□ 2.67
CHMP4B-201ENST00000217402 CDC27P30260 824 aa31.75■■■□□ 2.67
CHMP4B-201ENST00000217402 IKQ13123 557 aaPredicted RBP31.75■■■□□ 2.67
CHMP4B-201ENST00000217402 NOGQ13253 232 aa31.75■■■□□ 2.67
CHMP4B-201ENST00000217402 GPATCH4Q5T3I0 446 aaKnown RBP31.75■■■□□ 2.67
CHMP4B-201ENST00000217402 CPVLQ9H3G5 476 aa31.75■■■□□ 2.67
CHMP4B-201ENST00000217402 PALM3A6NDB9 673 aaPredicted RBP31.74■■■□□ 2.67
CHMP4B-201ENST00000217402 PFKFB2O60825 505 aa31.74■■■□□ 2.67
CHMP4B-201ENST00000217402 GPAT2Q6NUI2 795 aa31.74■■■□□ 2.67
CHMP4B-201ENST00000217402 ZSCAN31Q96LW9 406 aaPredicted RBP31.74■■■□□ 2.67
CHMP4B-201ENST00000217402 NID2Q14112 1375 aa31.74■■■□□ 2.67
CHMP4B-201ENST00000217402 PLEKHA8P1O95397 391 aa31.73■■■□□ 2.67
CHMP4B-201ENST00000217402 SLC16A2P36021 539 aa31.73■■■□□ 2.67
CHMP4B-201ENST00000217402 KIF23Q02241 960 aaPredicted RBP31.73■■■□□ 2.67
CHMP4B-201ENST00000217402 SCRN1Q12765 414 aa31.73■■■□□ 2.67
CHMP4B-201ENST00000217402 CMTR1Q8N1G2 835 aaKnown RBP31.73■■■□□ 2.67
CHMP4B-201ENST00000217402 SNX21Q969T3 373 aa31.73■■■□□ 2.67
CHMP4B-201ENST00000217402 TMX3Q96JJ7 454 aa31.73■■■□□ 2.67
CHMP4B-201ENST00000217402 FAM217BQ9NTX9 383 aaPredicted RBP31.73■■■□□ 2.67
CHMP4B-201ENST00000217402 FBXO28Q9NVF7 368 aa31.73■■■□□ 2.67
CHMP4B-201ENST00000217402 WDR33Q9C0J8 1336 aaKnown RBP31.73■■■□□ 2.67
CHMP4B-201ENST00000217402 BTBD19C9JJ37 291 aa31.72■■■□□ 2.67
CHMP4B-201ENST00000217402 KLRF2D3W0D1 207 aa31.72■■■□□ 2.67
CHMP4B-201ENST00000217402 ADD1P35611 737 aaKnown RBP31.72■■■□□ 2.67
CHMP4B-201ENST00000217402 VEGFBP49765 207 aa31.72■■■□□ 2.67
CHMP4B-201ENST00000217402 HSCBQ8IWL3 235 aa31.72■■■□□ 2.67
CHMP4B-201ENST00000217402 PTPN18Q99952 460 aa31.72■■■□□ 2.67
CHMP4B-201ENST00000217402 UBA5Q9GZZ9 404 aa31.72■■■□□ 2.67
CHMP4B-201ENST00000217402 RBM28Q9NW13 759 aaKnown RBP31.72■■■□□ 2.67
CHMP4B-201ENST00000217402 USP17L15C9J2P7 530 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 USP17L13C9JLJ4 530 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 USP17L11C9JVI0 530 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 USP17L18D6R9N7 530 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 USP17L22D6RA61 530 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 USP17L17D6RBQ6 530 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 USP17L19D6RCP7 530 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 USP17L20D6RJB6 530 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 FLOT1O75955 427 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 STAT2P52630 851 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 USP17L24Q0WX57 530 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 GTF3C6Q969F1 213 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 SH2B1Q9NRF2 756 aaPredicted RBP31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 TESPA1A2RU30 521 aaPredicted RBP31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 SREBF2Q12772 1141 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 FAM43AQ8N2R8 423 aa31.71■■■□□ 2.67
CHMP4B-201ENST00000217402 CCDC196A0A1B0GTZ2 297 aa31.7■■■□□ 2.66
CHMP4B-201ENST00000217402 CATSPERGQ6ZRH7 1159 aa31.7■■■□□ 2.66
CHMP4B-201ENST00000217402 TMTC3Q6ZXV5 915 aa31.7■■■□□ 2.66
CHMP4B-201ENST00000217402 CCDC83Q8IWF9 413 aa31.7■■■□□ 2.66
CHMP4B-201ENST00000217402 CCDC82Q8N4S0 544 aa31.7■■■□□ 2.66
CHMP4B-201ENST00000217402 FEM1BQ9UK73 627 aa31.7■■■□□ 2.66
CHMP4B-201ENST00000217402 ST3GAL1Q11201 340 aa31.69■■■□□ 2.66
CHMP4B-201ENST00000217402 ANKRD23Q86SG2 305 aa31.69■■■□□ 2.66
CHMP4B-201ENST00000217402 NBPF11Q86T75 865 aa31.69■■■□□ 2.66
CHMP4B-201ENST00000217402 KIFC2Q96AC6 838 aa31.69■■■□□ 2.66
CHMP4B-201ENST00000217402 K7ELQ4 463 aaPredicted RBP31.68■■■□□ 2.66
CHMP4B-201ENST00000217402 PDHXO00330 501 aa31.68■■■□□ 2.66
CHMP4B-201ENST00000217402 IGF2BP3O00425 579 aaKnown RBP eCLIP31.68■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms