RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 RGL1Q9NZL6 768 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 ZMAT5Q9UDW3 170 aaKnown RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 GOLGA8RI6L899 631 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 HARSP12081 509 aaKnown RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 CCND1P24385 295 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 PCYT1AP49585 367 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 ERFP50548 548 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 FLOT2Q14254 428 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 GCC1Q96CN9 775 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 BHMG1C9JSJ3 638 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 APOL1O14791 398 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 ATP2C2O75185 946 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 SMAD4Q13485 552 aaKnown RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 PALM2Q8IXS6 379 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 ST13P4Q8IZP2 240 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 TEX13AQ9BXU3 409 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 EPN2O95208 641 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 CYP11B2P19099 503 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 ATP5DP30049 168 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 GDI1P31150 447 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 G3BP1Q13283 466 aaKnown RBP eCLIP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 KCNB2Q92953 911 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 FARSBQ9NSD9 589 aaKnown RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 DACH1Q9UI36 760 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 A0A0G2JS52 829 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 CFAP100Q494V2 611 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 C10orf53Q8N6V4 93 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 ASIC4Q96FT7 647 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 AKAP7Q9P0M2 348 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 DDX41Q9UJV9 622 aaKnown RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 SH3D21A4FU49 640 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 FOXN3O00409 490 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 ZC3H12BQ5HYM0 836 aaKnown RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 CYP4F22Q6NT55 531 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 ZNF653Q96CK0 615 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 ZNF277Q9NRM2 450 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 GIMAP4Q9NUV9 329 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 PFDN2Q9UHV9 154 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 CACNA1GO43497 2377 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC160A6NGH7 325 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 SH3BP5LQ7L8J4 393 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 ST13P5Q8NFI4 369 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 FAM81AQ8TBF8 368 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 TRPC6Q9Y210 931 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 RALGAPA1Q6GYQ0 2036 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 CHD3Q12873 2000 aaKnown RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 ECE1P42892 770 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 MAGEA8P43361 318 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 RCAN1P53805 252 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 C4orf46Q504U0 113 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 BTNL9Q6UXG8 535 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 RSRC2Q7L4I2 434 aaKnown RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 JAZF1Q86VZ6 243 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 SPATA24Q86W54 205 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 STX12Q86Y82 276 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 OPTNQ96CV9 577 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 MAP3K7O43318 606 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 TADA3O75528 432 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 MXI1P50539 228 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 APOBRQ0VD83 1088 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 COL19A1Q14993 1142 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 RGS9BPQ6ZS82 235 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 RSPH3Q86UC2 560 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 KIAA1958Q8N8K9 716 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 FNBP1Q96RU3 617 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 FAM129AQ9BZQ8 928 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 VPS16Q9H269 839 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 ZNF624Q9P2J8 865 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 TEKT2Q9UIF3 430 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 CCPG1Q9ULG6 757 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 GMEB1Q9Y692 573 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 KRT87PA6NCN2 255 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 ZBTB16Q05516 673 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 FERD3LQ96RJ6 166 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 TAGLN3Q9UI15 199 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 AMOTL2Q9Y2J4 779 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 TSPAN1O60635 241 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 SKAP2O75563 359 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 SURF6O75683 361 aaKnown RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 DNAJC8O75937 253 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 PLD6Q8N2A8 252 aaKnown RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 GOT1L1Q8NHS2 421 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 ERBB4Q15303 1308 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC159P0C7I6 412 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 HSPA8P11142 646 aaKnown RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 CSNK2BP67870 215 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 ARHGAP44Q17R89 818 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC38Q502W7 563 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 SULT1C3Q6IMI6 304 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 SRRM1Q8IYB3 904 aaKnown RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 SLC22A8Q8TCC7 542 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 ALS2CR12Q96Q35 445 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 ADAM33Q9BZ11 813 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 MTHFD1P11586 935 aaKnown RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 PSME1Q06323 249 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 POU5F1BQ06416 359 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 LRMPQ12912 555 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 ZNF467Q7Z7K2 595 aaPredicted RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms