RNA–Protein interactions for RNA: ENST00000637223.1

CLN6-218, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 652 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-218ENST00000637223 TMX2Q9Y320 296 aa20.29■□□□□ 0.84
CLN6-218ENST00000637223 MYH8P13535 1937 aa20.29■□□□□ 0.84
CLN6-218ENST00000637223 PDHXO00330 501 aa20.28■□□□□ 0.84
CLN6-218ENST00000637223 RAD21O60216 631 aa20.28■□□□□ 0.84
CLN6-218ENST00000637223 TBC1D8O95759 1140 aa20.28■□□□□ 0.84
CLN6-218ENST00000637223 LRRC47Q8N1G4 583 aaKnown RBP20.28■□□□□ 0.84
CLN6-218ENST00000637223 ZNF296Q8WUU4 475 aaPredicted RBP20.28■□□□□ 0.84
CLN6-218ENST00000637223 ZSWIM5Q9P217 1185 aa20.28■□□□□ 0.84
CLN6-218ENST00000637223 AGTPBP1Q9UPW5 1226 aa20.28■□□□□ 0.84
CLN6-218ENST00000637223 C8orf34Q49A92 452 aa20.27■□□□□ 0.84
CLN6-218ENST00000637223 KIAA1755Q5JYT7 1200 aa20.27■□□□□ 0.84
CLN6-218ENST00000637223 CYB5R4Q7L1T6 521 aa20.27■□□□□ 0.84
CLN6-218ENST00000637223 RASEFQ8IZ41 740 aa20.27■□□□□ 0.84
CLN6-218ENST00000637223 SPICE1Q8N0Z3 855 aa20.27■□□□□ 0.84
CLN6-218ENST00000637223 NCOA7Q8NI08 942 aa20.27■□□□□ 0.84
CLN6-218ENST00000637223 C12orf42Q96LP6 360 aa20.27■□□□□ 0.84
CLN6-218ENST00000637223 USP26Q9BXU7 913 aa20.27■□□□□ 0.84
CLN6-218ENST00000637223 VCPKMTQ9H867 229 aa20.27■□□□□ 0.84
CLN6-218ENST00000637223 TCP11L1Q9NUJ3 509 aa20.27■□□□□ 0.84
CLN6-218ENST00000637223 GREB1LQ9C091 1923 aaPredicted RBP20.27■□□□□ 0.84
CLN6-218ENST00000637223 ALDH1A1P00352 501 aa20.26■□□□□ 0.83
CLN6-218ENST00000637223 VCAM1P19320 739 aa20.26■□□□□ 0.83
CLN6-218ENST00000637223 HSPA4P34932 840 aa20.26■□□□□ 0.83
CLN6-218ENST00000637223 NT5C2P49902 561 aa20.26■□□□□ 0.83
CLN6-218ENST00000637223 TAF1CQ15572 869 aaPredicted RBP20.26■□□□□ 0.83
CLN6-218ENST00000637223 HABP4Q5JVS0 413 aaKnown RBP20.26■□□□□ 0.83
CLN6-218ENST00000637223 PPP4R3BQ5MIZ7 849 aa20.26■□□□□ 0.83
CLN6-218ENST00000637223 IQCA1Q86XH1 822 aa20.26■□□□□ 0.83
CLN6-218ENST00000637223 SEC24BO95487 1268 aa20.25■□□□□ 0.83
CLN6-218ENST00000637223 ZKSCAN1P17029 563 aaPredicted RBP20.25■□□□□ 0.83
CLN6-218ENST00000637223 CHST3Q7LGC8 479 aa20.25■□□□□ 0.83
CLN6-218ENST00000637223 MKL1Q969V6 931 aa20.25■□□□□ 0.83
CLN6-218ENST00000637223 GOPCQ9HD26 462 aa20.25■□□□□ 0.83
CLN6-218ENST00000637223 EPB41L2O43491 1005 aaKnown RBP20.24■□□□□ 0.83
CLN6-218ENST00000637223 CYP2C8P10632 490 aa20.24■□□□□ 0.83
CLN6-218ENST00000637223 NOVP48745 357 aa20.24■□□□□ 0.83
CLN6-218ENST00000637223 PABPC4Q13310 644 aaKnown RBP eCLIP20.24■□□□□ 0.83
CLN6-218ENST00000637223 CRHR2Q13324 411 aa20.24■□□□□ 0.83
CLN6-218ENST00000637223 COL9A3Q14050 684 aaPredicted RBP20.24■□□□□ 0.83
CLN6-218ENST00000637223 MB21D2Q8IYB1 491 aaPredicted RBP20.24■□□□□ 0.83
CLN6-218ENST00000637223 CHMP4CQ96CF2 233 aa20.24■□□□□ 0.83
CLN6-218ENST00000637223 ZSCAN10Q96SZ4 725 aaPredicted RBP20.24■□□□□ 0.83
CLN6-218ENST00000637223 UBAC1Q9BSL1 405 aa20.24■□□□□ 0.83
CLN6-218ENST00000637223 R3HDMLQ9H3Y0 253 aa20.24■□□□□ 0.83
CLN6-218ENST00000637223 RPAP3Q9H6T3 665 aaPredicted RBP20.24■□□□□ 0.83
CLN6-218ENST00000637223 ZCCHC17Q9NP64 241 aaKnown RBP20.24■□□□□ 0.83
CLN6-218ENST00000637223 TNKSO95271 1327 aa20.24■□□□□ 0.83
CLN6-218ENST00000637223 F5H6K3 240 aa20.23■□□□□ 0.83
CLN6-218ENST00000637223 NDUFB10O96000 172 aa20.23■□□□□ 0.83
CLN6-218ENST00000637223 KLRC3Q07444 240 aa20.23■□□□□ 0.83
CLN6-218ENST00000637223 ADCK5Q3MIX3 580 aa20.23■□□□□ 0.83
CLN6-218ENST00000637223 RCSD1Q6JBY9 416 aa20.23■□□□□ 0.83
CLN6-218ENST00000637223 FBXO46Q6PJ61 603 aaPredicted RBP20.23■□□□□ 0.83
CLN6-218ENST00000637223 LPAR1Q92633 364 aa20.23■□□□□ 0.83
CLN6-218ENST00000637223 KCNB2Q92953 911 aa20.23■□□□□ 0.83
CLN6-218ENST00000637223 PARK7Q99497 189 aaKnown RBP20.23■□□□□ 0.83
CLN6-218ENST00000637223 TMEM47Q9BQJ4 181 aa20.23■□□□□ 0.83
CLN6-218ENST00000637223 ZFYVE28Q9HCC9 887 aa20.23■□□□□ 0.83
CLN6-218ENST00000637223 MTMR7Q9Y216 660 aa20.23■□□□□ 0.83
CLN6-218ENST00000637223 SLC45A1Q9Y2W3 748 aa20.23■□□□□ 0.83
CLN6-218ENST00000637223 SNX14Q9Y5W7 946 aa20.23■□□□□ 0.83
CLN6-218ENST00000637223 LOC285556D6RIA3 1793 aa20.22■□□□□ 0.83
CLN6-218ENST00000637223 TOP1P11387 765 aaKnown RBP20.22■□□□□ 0.83
CLN6-218ENST00000637223 OSBPP22059 807 aa20.22■□□□□ 0.83
CLN6-218ENST00000637223 MCCP23508 829 aa20.22■□□□□ 0.83
CLN6-218ENST00000637223 ANTXR2P58335 489 aa20.22■□□□□ 0.83
CLN6-218ENST00000637223 IRX3P78415 501 aaPredicted RBP20.22■□□□□ 0.83
CLN6-218ENST00000637223 TSGA10IPQ3SY00 556 aa20.22■□□□□ 0.83
CLN6-218ENST00000637223 CCDC178Q5BJE1 867 aa20.22■□□□□ 0.83
CLN6-218ENST00000637223 ENAHQ8N8S7 591 aaPredicted RBP20.22■□□□□ 0.83
CLN6-218ENST00000637223 NEK1Q96PY6 1258 aa20.22■□□□□ 0.83
CLN6-218ENST00000637223 NUP88Q99567 741 aaPredicted RBP20.22■□□□□ 0.83
CLN6-218ENST00000637223 TANGO6Q9C0B7 1094 aa20.22■□□□□ 0.83
CLN6-218ENST00000637223 ASCC2Q9H1I8 757 aaPredicted RBP20.22■□□□□ 0.83
CLN6-218ENST00000637223 PNMA3Q9UL41 463 aa20.22■□□□□ 0.83
CLN6-218ENST00000637223 PTPRFP10586 1907 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 USP17L15C9J2P7 530 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 USP17L13C9JLJ4 530 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 USP17L11C9JVI0 530 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 USP17L18D6R9N7 530 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 USP17L22D6RA61 530 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 USP17L17D6RBQ6 530 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 USP17L19D6RCP7 530 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 USP17L20D6RJB6 530 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 GPR25O00155 361 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 IFIT3O14879 490 aaKnown RBP20.21■□□□□ 0.83
CLN6-218ENST00000637223 WDR46O15213 610 aaKnown RBP20.21■□□□□ 0.83
CLN6-218ENST00000637223 PRC1O43663 620 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 EIF5BO60841 1220 aaKnown RBP20.21■□□□□ 0.83
CLN6-218ENST00000637223 HOXA7P31268 230 aaPredicted RBP20.21■□□□□ 0.83
CLN6-218ENST00000637223 USP17L24Q0WX57 530 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 KRT32Q14532 448 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 FAM83BQ5T0W9 1011 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 SLFN13Q68D06 897 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 DGKHQ86XP1 1220 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 GMCL1P1Q8NEA9 526 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 TTC14Q96N46 770 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 SYNPO2Q9UMS6 1093 aa20.21■□□□□ 0.83
CLN6-218ENST00000637223 MCM5P33992 734 aa20.2■□□□□ 0.82
CLN6-218ENST00000637223 CATSPERGQ6ZRH7 1159 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms