RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 KCTD2Q14681 263 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 SPRED3Q2MJR0 410 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 C8orf34Q49A92 452 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 SOGA3Q5TF21 947 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 MPZL3Q6UWV2 235 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.73□□□□□ -1.81
VIM-210ENST00000637053 ATG14Q6ZNE5 492 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 ANKRD23Q86SG2 305 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 GGNQ86UU5 652 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 PRPF38AQ8NAV1 312 aaKnown RBP3.73□□□□□ -1.81
VIM-210ENST00000637053 FBXO15Q8NCQ5 510 aaPredicted RBP3.73□□□□□ -1.81
VIM-210ENST00000637053 STK32AQ8WU08 396 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 PPM1EQ8WY54 764 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 PMEPA1Q969W9 287 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 HEXIM2Q96MH2 286 aaKnown RBP3.73□□□□□ -1.81
VIM-210ENST00000637053 DIRC2Q96SL1 478 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 MYCBPQ99417 103 aaPredicted RBP3.73□□□□□ -1.81
VIM-210ENST00000637053 ARPC5LQ9BPX5 153 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 DUSP23Q9BVJ7 150 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 TGIF2Q9GZN2 237 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 TYW1Q9NV66 732 aaKnown RBP3.73□□□□□ -1.81
VIM-210ENST00000637053 C19orf73Q9NVV2 129 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 ANAPC4Q9UJX5 808 aa3.73□□□□□ -1.81
VIM-210ENST00000637053 TCERG1O14776 1098 aaKnown RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 TMPRSS2O15393 492 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 PLIN1O60240 522 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 FOSP01100 380 aaPredicted RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 XRCC5P13010 732 aaKnown RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 EDN3P14138 238 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 ITIH2P19823 946 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 PDE6BP35913 854 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 GNALP38405 381 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 AFMP43652 599 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 GRIA4P48058 902 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 TERF1P54274 439 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 IRX3P78415 501 aaPredicted RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 DNM1Q05193 864 aaKnown RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 IKZF1Q13422 519 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 ELOAQ14241 798 aaKnown RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 VPS72Q15906 364 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 CC2D1AQ6P1N0 951 aaPredicted RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 FAM214BQ7L5A3 538 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 SAMD3Q8N6K7 520 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 WDR89Q96FK6 387 aaPredicted RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 KIRREL1Q96J84 757 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 FRMD6Q96NE9 622 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 CEP89Q96ST8 783 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 APBA2Q99767 749 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 IER2Q9BTL4 223 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 LRRC27Q9C0I9 530 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 CLEC4MQ9H2X3 399 aaPredicted RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 ACBD3Q9H3P7 528 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 NSUN3Q9H649 340 aaKnown RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 CWC25Q9NXE8 425 aaPredicted RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 SLAIN2Q9P270 581 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 ABCF2Q9UG63 623 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 FOXD3Q9UJU5 478 aaPredicted RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 NOL7Q9UMY1 257 aaKnown RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 AKAP2Q9Y2D5 859 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 THRAP3Q9Y2W1 955 aaKnown RBP3.72□□□□□ -1.81
VIM-210ENST00000637053 EID1Q9Y6B2 187 aa3.72□□□□□ -1.81
VIM-210ENST00000637053 A0A096LPE4 126 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 A0A1W2PPZ6 126 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 HIP1RO75146 1068 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 TNFRSF21O75509 655 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 MED14OSP0DP75 135 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 TNNI2P48788 182 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 HSP90AB3PQ58FF7 597 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 TMEM67Q5HYA8 995 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 SYCP2LQ5T4T6 812 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 C1QTNF12Q5T7M4 302 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 CIAPIN1Q6FI81 312 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 RPAINQ86UA6 219 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 ZSCAN30Q86W11 494 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 PAF1Q8N7H5 531 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 RSPH1Q8WYR4 309 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 MRFAP1L1Q96HT8 127 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 FANCD2OSQ96PS1 177 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 PCGF6Q9BYE7 350 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.71□□□□□ -1.82
VIM-210ENST00000637053 PARD6AQ9NPB6 346 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 DISC1Q9NRI5 854 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 SEPT3Q9UH03 358 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 SMG5Q9UPR3 1016 aaKnown RBP3.71□□□□□ -1.82
VIM-210ENST00000637053 LZTS1Q9Y250 596 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 PRKAB1Q9Y478 270 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 SNX11Q9Y5W9 270 aa3.71□□□□□ -1.82
VIM-210ENST00000637053 SYNGAP1Q96PV0 1343 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 ETV2O00321 342 aaPredicted RBP3.7□□□□□ -1.82
VIM-210ENST00000637053 PPP1R12AO14974 1030 aaPredicted RBP3.7□□□□□ -1.82
VIM-210ENST00000637053 KIF3BO15066 747 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 RRP9O43818 475 aaKnown RBP3.7□□□□□ -1.82
VIM-210ENST00000637053 EIF4EBP3O60516 100 aaPredicted RBP3.7□□□□□ -1.82
VIM-210ENST00000637053 PHACTR2O75167 634 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 RPLP1P05386 114 aaKnown RBP3.7□□□□□ -1.82
VIM-210ENST00000637053 CT47B1P0C2W7 299 aaPredicted RBP3.7□□□□□ -1.82
VIM-210ENST00000637053 TMEM253P0C7T8 217 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 TGFB3P10600 412 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 TDO2P48775 406 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 GNL2Q13823 731 aaKnown RBP3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms