RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 NUP133Q8WUM0 1156 aa24.05■■□□□ 1.44
CLN3-245ENST00000636172 GTF3C6Q969F1 213 aa24.05■■□□□ 1.44
CLN3-245ENST00000636172 NCOA5Q9HCD5 579 aaKnown RBP24.05■■□□□ 1.44
CLN3-245ENST00000636172 ARHGEF10LQ9HCE6 1279 aa24.05■■□□□ 1.44
CLN3-245ENST00000636172 CSADQ9Y600 493 aa24.05■■□□□ 1.44
CLN3-245ENST00000636172 USP17L5A8MUK1 530 aa24.05■■□□□ 1.44
CLN3-245ENST00000636172 ECE1P42892 770 aa24.05■■□□□ 1.44
CLN3-245ENST00000636172 METAP2P50579 478 aaKnown RBP eCLIP24.05■■□□□ 1.44
CLN3-245ENST00000636172 CUL4AQ13619 759 aa24.05■■□□□ 1.44
CLN3-245ENST00000636172 CCDC83Q8IWF9 413 aa24.05■■□□□ 1.44
CLN3-245ENST00000636172 CCDC144CPQ8IYA2 1237 aa24.05■■□□□ 1.44
CLN3-245ENST00000636172 ANKRD13AQ8IZ07 590 aa24.05■■□□□ 1.44
CLN3-245ENST00000636172 GOLGA8AA7E2F4 631 aa24.04■■□□□ 1.44
CLN3-245ENST00000636172 UBE2Q2LH0YL09 131 aa24.04■■□□□ 1.44
CLN3-245ENST00000636172 CALM1P0DP23 149 aa24.04■■□□□ 1.44
CLN3-245ENST00000636172 CALM2P0DP24 149 aa24.04■■□□□ 1.44
CLN3-245ENST00000636172 CALM3P0DP25 149 aa24.04■■□□□ 1.44
CLN3-245ENST00000636172 FKBP1BP68106 108 aa24.04■■□□□ 1.44
CLN3-245ENST00000636172 LDLRAD1Q5T700 205 aa24.04■■□□□ 1.44
CLN3-245ENST00000636172 RASGRP2Q7LDG7 609 aa24.04■■□□□ 1.44
CLN3-245ENST00000636172 SMC1BQ8NDV3 1235 aa24.04■■□□□ 1.44
CLN3-245ENST00000636172 CLMNQ96JQ2 1002 aa24.04■■□□□ 1.44
CLN3-245ENST00000636172 IPO9Q96P70 1041 aaKnown RBP24.04■■□□□ 1.44
CLN3-245ENST00000636172 GBA2Q9HCG7 927 aaPredicted RBP24.04■■□□□ 1.44
CLN3-245ENST00000636172 SYNPO2Q9UMS6 1093 aa24.04■■□□□ 1.44
CLN3-245ENST00000636172 TMX2Q9Y320 296 aa24.04■■□□□ 1.44
CLN3-245ENST00000636172 PASKQ96RG2 1323 aa24.03■■□□□ 1.44
CLN3-245ENST00000636172 CST9Q5W186 159 aa24.03■■□□□ 1.44
CLN3-245ENST00000636172 FANCBQ8NB91 859 aa24.03■■□□□ 1.44
CLN3-245ENST00000636172 FAM217BQ9NTX9 383 aaPredicted RBP24.03■■□□□ 1.44
CLN3-245ENST00000636172 MTMR7Q9Y216 660 aa24.03■■□□□ 1.44
CLN3-245ENST00000636172 CDC27P30260 824 aa24.02■■□□□ 1.44
CLN3-245ENST00000636172 RTN1Q16799 776 aa24.02■■□□□ 1.44
CLN3-245ENST00000636172 RBM46Q8TBY0 533 aaKnown RBP24.02■■□□□ 1.44
CLN3-245ENST00000636172 MAP3K14Q99558 947 aa24.02■■□□□ 1.44
CLN3-245ENST00000636172 WDR18Q9BV38 432 aa24.02■■□□□ 1.44
CLN3-245ENST00000636172 TOMM70O94826 608 aa24.01■■□□□ 1.43
CLN3-245ENST00000636172 PDHBP11177 359 aa24.01■■□□□ 1.43
CLN3-245ENST00000636172 GRM4Q14833 912 aa24.01■■□□□ 1.43
CLN3-245ENST00000636172 GMCL1P1Q8NEA9 526 aa24.01■■□□□ 1.43
CLN3-245ENST00000636172 CHMP4CQ96CF2 233 aa24.01■■□□□ 1.43
CLN3-245ENST00000636172 SH2D4AQ9H788 454 aa24.01■■□□□ 1.43
CLN3-245ENST00000636172 ELP3Q9H9T3 547 aa24.01■■□□□ 1.43
CLN3-245ENST00000636172 ZHX2Q9Y6X8 837 aa24.01■■□□□ 1.43
CLN3-245ENST00000636172 SNHG28P0DPA3 235 aa24■■□□□ 1.43
CLN3-245ENST00000636172 C2orf69Q8N8R5 385 aa24■■□□□ 1.43
CLN3-245ENST00000636172 AS3MTQ9HBK9 375 aa24■■□□□ 1.43
CLN3-245ENST00000636172 UNCXA6NJT0 531 aa24■■□□□ 1.43
CLN3-245ENST00000636172 F5H6K3 240 aa24■■□□□ 1.43
CLN3-245ENST00000636172 NDUFB10O96000 172 aa24■■□□□ 1.43
CLN3-245ENST00000636172 ADD1P35611 737 aaKnown RBP24■■□□□ 1.43
CLN3-245ENST00000636172 KLRC3Q07444 240 aa24■■□□□ 1.43
CLN3-245ENST00000636172 ZNF280CQ8ND82 737 aa24■■□□□ 1.43
CLN3-245ENST00000636172 CTCFLQ8NI51 663 aaPredicted RBP24■■□□□ 1.43
CLN3-245ENST00000636172 CNKSR2Q8WXI2 1034 aa24■■□□□ 1.43
CLN3-245ENST00000636172 FEZ1Q99689 392 aa24■■□□□ 1.43
CLN3-245ENST00000636172 KIAA1683Q9H0B3 1180 aa24■■□□□ 1.43
CLN3-245ENST00000636172 ZBTB4Q9P1Z0 1013 aaPredicted RBP24■■□□□ 1.43
CLN3-245ENST00000636172 SPP2Q13103 211 aa23.99■■□□□ 1.43
CLN3-245ENST00000636172 PPP2R5BQ15173 497 aa23.99■■□□□ 1.43
CLN3-245ENST00000636172 KIAA1755Q5JYT7 1200 aa23.99■■□□□ 1.43
CLN3-245ENST00000636172 SLFN13Q68D06 897 aa23.99■■□□□ 1.43
CLN3-245ENST00000636172 USP17L2Q6R6M4 530 aa23.99■■□□□ 1.43
CLN3-245ENST00000636172 VCPKMTQ9H867 229 aa23.99■■□□□ 1.43
CLN3-245ENST00000636172 GOPCQ9HD26 462 aa23.99■■□□□ 1.43
CLN3-245ENST00000636172 FOXD4L1Q9NU39 408 aa23.99■■□□□ 1.43
CLN3-245ENST00000636172 MAD2L2Q9UI95 211 aa23.99■■□□□ 1.43
CLN3-245ENST00000636172 AFG3L2Q9Y4W6 797 aa23.99■■□□□ 1.43
CLN3-245ENST00000636172 CEP350Q5VT06 3117 aa23.98■■□□□ 1.43
CLN3-245ENST00000636172 SPDYE5A6NIY4 337 aa23.98■■□□□ 1.43
CLN3-245ENST00000636172 RAD21O60216 631 aa23.98■■□□□ 1.43
CLN3-245ENST00000636172 CTDNEP1O95476 244 aa23.98■■□□□ 1.43
CLN3-245ENST00000636172 ZYXQ15942 572 aaKnown RBP23.98■■□□□ 1.43
CLN3-245ENST00000636172 ERO1BQ86YB8 467 aa23.98■■□□□ 1.43
CLN3-245ENST00000636172 STAG2Q8N3U4 1231 aa23.98■■□□□ 1.43
CLN3-245ENST00000636172 SPRYD3Q8NCJ5 442 aa23.98■■□□□ 1.43
CLN3-245ENST00000636172 INTS4Q96HW7 963 aaKnown RBP23.98■■□□□ 1.43
CLN3-245ENST00000636172 RBM28Q9NW13 759 aaKnown RBP23.98■■□□□ 1.43
CLN3-245ENST00000636172 DAXXQ9UER7 740 aaPredicted RBP23.98■■□□□ 1.43
CLN3-245ENST00000636172 CCDC196A0A1B0GTZ2 297 aa23.97■■□□□ 1.43
CLN3-245ENST00000636172 PALM3A6NDB9 673 aaPredicted RBP23.97■■□□□ 1.43
CLN3-245ENST00000636172 TRIM75PA6NK02 468 aa23.97■■□□□ 1.43
CLN3-245ENST00000636172 USP17L10C9JJH3 530 aa23.97■■□□□ 1.43
CLN3-245ENST00000636172 DHX16O60231 1041 aaKnown RBP23.97■■□□□ 1.43
CLN3-245ENST00000636172 DTNBO60941 627 aa23.97■■□□□ 1.43
CLN3-245ENST00000636172 HSP90AA1P07900 732 aaKnown RBP23.97■■□□□ 1.43
CLN3-245ENST00000636172 PARP1P09874 1014 aaKnown RBP23.97■■□□□ 1.43
CLN3-245ENST00000636172 HSPA6P17066 643 aa23.97■■□□□ 1.43
CLN3-245ENST00000636172 KIF5BP33176 963 aa23.97■■□□□ 1.43
CLN3-245ENST00000636172 ZNF543Q08ER8 600 aa23.97■■□□□ 1.43
CLN3-245ENST00000636172 MTMR2Q13614 643 aa23.97■■□□□ 1.43
CLN3-245ENST00000636172 NTRK3Q16288 839 aa23.97■■□□□ 1.43
CLN3-245ENST00000636172 DCAF4Q8WV16 495 aa23.97■■□□□ 1.43
CLN3-245ENST00000636172 GMCL1Q96IK5 515 aa23.97■■□□□ 1.43
CLN3-245ENST00000636172 PTPRFP10586 1907 aa23.97■■□□□ 1.43
CLN3-245ENST00000636172 CPLX1O14810 134 aa23.96■■□□□ 1.43
CLN3-245ENST00000636172 PLEKHA8P1O95397 391 aa23.96■■□□□ 1.43
CLN3-245ENST00000636172 GOLGA8HP0CJ92 632 aa23.96■■□□□ 1.43
CLN3-245ENST00000636172 BACE1P56817 501 aa23.96■■□□□ 1.43
CLN3-245ENST00000636172 PPATQ06203 517 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms