RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CYB5R4Q7L1T6 521 aa15.98■□□□□ 0.15
LINC00540-202ENST00000616974 FASTKD5Q7L8L6 764 aaKnown RBP15.98■□□□□ 0.15
LINC00540-202ENST00000616974 CD99L2Q8TCZ2 262 aa15.98■□□□□ 0.15
LINC00540-202ENST00000616974 SENP2Q9HC62 589 aa15.98■□□□□ 0.15
LINC00540-202ENST00000616974 RCSD1Q6JBY9 416 aa15.98■□□□□ 0.15
LINC00540-202ENST00000616974 C17orf99Q6UX52 265 aa15.98■□□□□ 0.15
LINC00540-202ENST00000616974 REM2Q8IYK8 340 aaPredicted RBP15.98■□□□□ 0.15
LINC00540-202ENST00000616974 RASEFQ8IZ41 740 aa15.98■□□□□ 0.15
LINC00540-202ENST00000616974 CFHR5Q9BXR6 569 aa15.98■□□□□ 0.15
LINC00540-202ENST00000616974 RPAP3Q9H6T3 665 aaPredicted RBP15.98■□□□□ 0.15
LINC00540-202ENST00000616974 KANSL2Q9H9L4 492 aa15.98■□□□□ 0.15
LINC00540-202ENST00000616974 ANKRD13CQ8N6S4 541 aa15.97■□□□□ 0.15
LINC00540-202ENST00000616974 GPHNQ9NQX3 736 aaPredicted RBP15.97■□□□□ 0.15
LINC00540-202ENST00000616974 GINM1Q9NU53 330 aa15.97■□□□□ 0.15
LINC00540-202ENST00000616974 ZSWIM5Q9P217 1185 aa15.97■□□□□ 0.15
LINC00540-202ENST00000616974 STX8Q9UNK0 236 aa15.97■□□□□ 0.15
LINC00540-202ENST00000616974 TNRC18O15417 2968 aaPredicted RBP15.97■□□□□ 0.15
LINC00540-202ENST00000616974 ALDH1A1P00352 501 aa15.97■□□□□ 0.15
LINC00540-202ENST00000616974 IMMTQ16891 758 aaKnown RBP15.97■□□□□ 0.15
LINC00540-202ENST00000616974 OTUD7BQ6GQQ9 843 aa15.97■□□□□ 0.15
LINC00540-202ENST00000616974 USP17L2Q6R6M4 530 aa15.97■□□□□ 0.15
LINC00540-202ENST00000616974 C12orf42Q96LP6 360 aa15.97■□□□□ 0.15
LINC00540-202ENST00000616974 VCPKMTQ9H867 229 aa15.97■□□□□ 0.15
LINC00540-202ENST00000616974 ZFYVE28Q9HCC9 887 aa15.97■□□□□ 0.15
LINC00540-202ENST00000616974 TMOD4Q9NZQ9 345 aa15.97■□□□□ 0.15
LINC00540-202ENST00000616974 PLXNB2O15031 1838 aa15.96■□□□□ 0.15
LINC00540-202ENST00000616974 C19orf81C9J6K1 198 aa15.96■□□□□ 0.15
LINC00540-202ENST00000616974 SLC27A2O14975 620 aa15.96■□□□□ 0.15
LINC00540-202ENST00000616974 NDUFB10O96000 172 aa15.96■□□□□ 0.15
LINC00540-202ENST00000616974 SLC3A2P08195 630 aaKnown RBP15.96■□□□□ 0.15
LINC00540-202ENST00000616974 BCRP11274 1271 aa15.96■□□□□ 0.15
LINC00540-202ENST00000616974 Q3C1V9 767 aa15.96■□□□□ 0.15
LINC00540-202ENST00000616974 FAM83BQ5T0W9 1011 aa15.96■□□□□ 0.15
LINC00540-202ENST00000616974 A0A0G2JMZ2 1700 aa15.96■□□□□ 0.14
LINC00540-202ENST00000616974 E7EWF7 191 aa15.95■□□□□ 0.14
LINC00540-202ENST00000616974 SEC24BO95487 1268 aa15.95■□□□□ 0.14
LINC00540-202ENST00000616974 NECTIN1Q15223 517 aa15.95■□□□□ 0.14
LINC00540-202ENST00000616974 SMCR8Q8TEV9 937 aaPredicted RBP15.95■□□□□ 0.14
LINC00540-202ENST00000616974 ARHGEF10LQ9HCE6 1279 aa15.95■□□□□ 0.14
LINC00540-202ENST00000616974 F5H6K3 240 aa15.95■□□□□ 0.14
LINC00540-202ENST00000616974 ANTXR2P58335 489 aa15.95■□□□□ 0.14
LINC00540-202ENST00000616974 KLRC3Q07444 240 aa15.95■□□□□ 0.14
LINC00540-202ENST00000616974 CATSPERGQ6ZRH7 1159 aa15.95■□□□□ 0.14
LINC00540-202ENST00000616974 TANGO6Q9C0B7 1094 aa15.95■□□□□ 0.14
LINC00540-202ENST00000616974 NYAP2Q9P242 653 aa15.95■□□□□ 0.14
LINC00540-202ENST00000616974 ZNFX1Q9P2E3 1918 aaKnown RBP15.95■□□□□ 0.14
LINC00540-202ENST00000616974 SPDYE16A6NNV3 312 aaPredicted RBP15.94■□□□□ 0.14
LINC00540-202ENST00000616974 CNMDO75829 334 aa15.94■□□□□ 0.14
LINC00540-202ENST00000616974 TTLL1O95922 423 aa15.94■□□□□ 0.14
LINC00540-202ENST00000616974 TAL1P17542 331 aaPredicted RBP15.94■□□□□ 0.14
LINC00540-202ENST00000616974 HOXA7P31268 230 aaPredicted RBP15.94■□□□□ 0.14
LINC00540-202ENST00000616974 HERVK_113P62684 666 aa15.94■□□□□ 0.14
LINC00540-202ENST00000616974 ADCK5Q3MIX3 580 aa15.94■□□□□ 0.14
LINC00540-202ENST00000616974 CREB3L3Q68CJ9 461 aa15.94■□□□□ 0.14
LINC00540-202ENST00000616974 PARK7Q99497 189 aaKnown RBP15.94■□□□□ 0.14
LINC00540-202ENST00000616974 PAGR1Q9BTK6 254 aa15.94■□□□□ 0.14
LINC00540-202ENST00000616974 TBC1D2Q9BYX2 928 aa15.94■□□□□ 0.14
LINC00540-202ENST00000616974 RBPJLQ9UBG7 517 aa15.94■□□□□ 0.14
LINC00540-202ENST00000616974 U3KPZ7 1027 aaPredicted RBP15.94■□□□□ 0.14
LINC00540-202ENST00000616974 CPA1P15085 419 aa15.94■□□□□ 0.14
LINC00540-202ENST00000616974 IRX3P78415 501 aaPredicted RBP15.94■□□□□ 0.14
LINC00540-202ENST00000616974 SP3Q02447 781 aa15.94■□□□□ 0.14
LINC00540-202ENST00000616974 TCEANC2Q96MN5 208 aa15.94■□□□□ 0.14
LINC00540-202ENST00000616974 TMEM47Q9BQJ4 181 aa15.94■□□□□ 0.14
LINC00540-202ENST00000616974 BTBD7Q9P203 1132 aa15.94■□□□□ 0.14
LINC00540-202ENST00000616974 MYH6P13533 1939 aa15.93■□□□□ 0.14
LINC00540-202ENST00000616974 FKTNO75072 461 aa15.93■□□□□ 0.14
LINC00540-202ENST00000616974 MCCP23508 829 aa15.93■□□□□ 0.14
LINC00540-202ENST00000616974 KIAA1211Q6ZU35 1233 aa15.93■□□□□ 0.14
LINC00540-202ENST00000616974 ENAHQ8N8S7 591 aaPredicted RBP15.93■□□□□ 0.14
LINC00540-202ENST00000616974 ATG4CQ96DT6 458 aa15.93■□□□□ 0.14
LINC00540-202ENST00000616974 TRIM47Q96LD4 638 aa15.93■□□□□ 0.14
LINC00540-202ENST00000616974 LRRC2Q9BYS8 371 aa15.93■□□□□ 0.14
LINC00540-202ENST00000616974 PORCNQ9H237 461 aa15.93■□□□□ 0.14
LINC00540-202ENST00000616974 CPVLQ9H3G5 476 aa15.93■□□□□ 0.14
LINC00540-202ENST00000616974 ZNF287Q9HBT7 754 aa15.93■□□□□ 0.14
LINC00540-202ENST00000616974 PRDM10Q9NQV6 1147 aa15.93■□□□□ 0.14
LINC00540-202ENST00000616974 CTNNA3Q9UI47 895 aa15.93■□□□□ 0.14
LINC00540-202ENST00000616974 NOVP48745 357 aa15.92■□□□□ 0.14
LINC00540-202ENST00000616974 USP14P54578 494 aa15.92■□□□□ 0.14
LINC00540-202ENST00000616974 SNAP25P60880 206 aa15.92■□□□□ 0.14
LINC00540-202ENST00000616974 LACTBP83111 547 aaPredicted RBP15.92■□□□□ 0.14
LINC00540-202ENST00000616974 KCTD1Q719H9 257 aa15.92■□□□□ 0.14
LINC00540-202ENST00000616974 MKL1Q969V6 931 aa15.92■□□□□ 0.14
LINC00540-202ENST00000616974 ZCCHC17Q9NP64 241 aaKnown RBP15.92■□□□□ 0.14
LINC00540-202ENST00000616974 SLC45A1Q9Y2W3 748 aa15.92■□□□□ 0.14
LINC00540-202ENST00000616974 USP17L15C9J2P7 530 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 USP17L13C9JLJ4 530 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 USP17L11C9JVI0 530 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 USP17L18D6R9N7 530 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 USP17L22D6RA61 530 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 USP17L17D6RBQ6 530 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 USP17L19D6RCP7 530 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 USP17L20D6RJB6 530 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 FLOT1O75955 427 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 TNKSO95271 1327 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 USP17L24Q0WX57 530 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 TTBK2Q6IQ55 1244 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 MB21D2Q8IYB1 491 aaPredicted RBP15.91■□□□□ 0.14
LINC00540-202ENST00000616974 ESR2Q92731 530 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms