RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 EVCP57679 992 aa17.21■□□□□ 0.34
CD48-203ENST00000613788 APOBRQ0VD83 1088 aa17.21■□□□□ 0.34
CD48-203ENST00000613788 RGMBQ6NW40 437 aa17.21■□□□□ 0.34
CD48-203ENST00000613788 LRRC47Q8N1G4 583 aaKnown RBP17.21■□□□□ 0.34
CD48-203ENST00000613788 SENP2Q9HC62 589 aa17.21■□□□□ 0.34
CD48-203ENST00000613788 CREBZFQ9NS37 354 aa17.21■□□□□ 0.34
CD48-203ENST00000613788 KLF18A0A0U1RQI7 1052 aa17.2■□□□□ 0.34
CD48-203ENST00000613788 TRIM75PA6NK02 468 aa17.2■□□□□ 0.34
CD48-203ENST00000613788 CALM1P0DP23 149 aa17.2■□□□□ 0.34
CD48-203ENST00000613788 CALM2P0DP24 149 aa17.2■□□□□ 0.34
CD48-203ENST00000613788 CALM3P0DP25 149 aa17.2■□□□□ 0.34
CD48-203ENST00000613788 ZNF654Q8IZM8 581 aa17.2■□□□□ 0.34
CD48-203ENST00000613788 GMCL1P1Q8NEA9 526 aa17.2■□□□□ 0.34
CD48-203ENST00000613788 CNKSR2Q8WXI2 1034 aa17.2■□□□□ 0.34
CD48-203ENST00000613788 ZNF274Q96GC6 653 aaPredicted RBP17.2■□□□□ 0.34
CD48-203ENST00000613788 WNK4Q96J92 1243 aa17.2■□□□□ 0.34
CD48-203ENST00000613788 LIMCH1Q9UPQ0 1083 aa17.2■□□□□ 0.34
CD48-203ENST00000613788 ATAD5Q96QE3 1844 aa17.2■□□□□ 0.34
CD48-203ENST00000613788 F5H6K3 240 aa17.19■□□□□ 0.34
CD48-203ENST00000613788 IRF6O14896 467 aa17.19■□□□□ 0.34
CD48-203ENST00000613788 RAD21O60216 631 aa17.19■□□□□ 0.34
CD48-203ENST00000613788 DDAH1O94760 285 aa17.19■□□□□ 0.34
CD48-203ENST00000613788 ZBTB48P10074 688 aaPredicted RBP17.19■□□□□ 0.34
CD48-203ENST00000613788 KLRC3Q07444 240 aa17.19■□□□□ 0.34
CD48-203ENST00000613788 MTMR2Q13614 643 aa17.19■□□□□ 0.34
CD48-203ENST00000613788 USP17L2Q6R6M4 530 aa17.19■□□□□ 0.34
CD48-203ENST00000613788 CCDC102AQ96A19 550 aa17.19■□□□□ 0.34
CD48-203ENST00000613788 VCPKMTQ9H867 229 aa17.19■□□□□ 0.34
CD48-203ENST00000613788 BRPF3Q9ULD4 1205 aa17.19■□□□□ 0.34
CD48-203ENST00000613788 NAP1L2Q9ULW6 460 aaPredicted RBP17.19■□□□□ 0.34
CD48-203ENST00000613788 OTOFQ9HC10 1997 aa17.19■□□□□ 0.34
CD48-203ENST00000613788 ZBTB43O43298 467 aa17.18■□□□□ 0.34
CD48-203ENST00000613788 RCAN1P53805 252 aa17.18■□□□□ 0.34
CD48-203ENST00000613788 ZYXQ15942 572 aaKnown RBP17.18■□□□□ 0.34
CD48-203ENST00000613788 SPRYD7Q5W111 196 aa17.18■□□□□ 0.34
CD48-203ENST00000613788 SLFN13Q68D06 897 aa17.18■□□□□ 0.34
CD48-203ENST00000613788 APOA5Q6Q788 366 aa17.18■□□□□ 0.34
CD48-203ENST00000613788 LPAR1Q92633 364 aa17.18■□□□□ 0.34
CD48-203ENST00000613788 ZSCAN31Q96LW9 406 aaPredicted RBP17.18■□□□□ 0.34
CD48-203ENST00000613788 MAP3K14Q99558 947 aa17.18■□□□□ 0.34
CD48-203ENST00000613788 TMOD4Q9NZQ9 345 aa17.18■□□□□ 0.34
CD48-203ENST00000613788 KCNH4Q9UQ05 1017 aa17.18■□□□□ 0.34
CD48-203ENST00000613788 TROAPQ12815 778 aa17.17■□□□□ 0.34
CD48-203ENST00000613788 SNAPC2Q13487 334 aa17.17■□□□□ 0.34
CD48-203ENST00000613788 SH3D19Q5HYK7 790 aa17.17■□□□□ 0.34
CD48-203ENST00000613788 NOL8Q76FK4 1167 aaKnown RBP17.17■□□□□ 0.34
CD48-203ENST00000613788 NUP133Q8WUM0 1156 aa17.17■□□□□ 0.34
CD48-203ENST00000613788 SNX21Q969T3 373 aa17.17■□□□□ 0.34
CD48-203ENST00000613788 LARP6Q9BRS8 491 aaKnown RBP17.17■□□□□ 0.34
CD48-203ENST00000613788 TPCN1Q9ULQ1 816 aa17.17■□□□□ 0.34
CD48-203ENST00000613788 GOLGA8BA8MQT2 603 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 PDIA3P30101 505 aaKnown RBP17.16■□□□□ 0.34
CD48-203ENST00000613788 KIF5BP33176 963 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 GJA5P36382 358 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 SLC1A4P43007 532 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 GTF2A2P52657 109 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 HMGCS2P54868 508 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 PPP2R5BQ15173 497 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 DEFB115Q30KQ5 88 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 RASAL3Q86YV0 1011 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 CTCFLQ8NI51 663 aaPredicted RBP17.16■□□□□ 0.34
CD48-203ENST00000613788 DCAF4Q8WV16 495 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 GMCL1Q96IK5 515 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 C12orf42Q96LP6 360 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 MTMR7Q9Y216 660 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 A0A0G2JLL6 359 aaPredicted RBP17.16■□□□□ 0.34
CD48-203ENST00000613788 NDUFB10O96000 172 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 PDHBP11177 359 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 FASTKD5Q7L8L6 764 aaKnown RBP17.16■□□□□ 0.34
CD48-203ENST00000613788 PRRT2Q7Z6L0 340 aaPredicted RBP17.16■□□□□ 0.34
CD48-203ENST00000613788 MICU3Q86XE3 530 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 SPICE1Q8N0Z3 855 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 FANCBQ8NB91 859 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 CHMP4CQ96CF2 233 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 MYL10Q9BUA6 226 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 SLKQ9H2G2 1235 aaPredicted RBP17.16■□□□□ 0.34
CD48-203ENST00000613788 TSHZ2Q9NRE2 1034 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 SH2B1Q9NRF2 756 aaPredicted RBP17.16■□□□□ 0.34
CD48-203ENST00000613788 EMILIN3Q9NT22 766 aa17.16■□□□□ 0.34
CD48-203ENST00000613788 CCDC196A0A1B0GTZ2 297 aa17.15■□□□□ 0.34
CD48-203ENST00000613788 RASSF10A6NK89 507 aa17.15■□□□□ 0.34
CD48-203ENST00000613788 GOLGA8AA7E2F4 631 aa17.15■□□□□ 0.34
CD48-203ENST00000613788 WDR46O15213 610 aaKnown RBP17.15■□□□□ 0.34
CD48-203ENST00000613788 CD2BP2O95400 341 aaKnown RBP17.15■□□□□ 0.34
CD48-203ENST00000613788 SLC10A3P09131 477 aa17.15■□□□□ 0.34
CD48-203ENST00000613788 PARP1P09874 1014 aaKnown RBP17.15■□□□□ 0.34
CD48-203ENST00000613788 SNHG28P0DPA3 235 aa17.15■□□□□ 0.34
CD48-203ENST00000613788 CETPP11597 493 aa17.15■□□□□ 0.34
CD48-203ENST00000613788 METAP2P50579 478 aaKnown RBP eCLIP17.15■□□□□ 0.34
CD48-203ENST00000613788 ASPRV1Q53RT3 343 aa17.15■□□□□ 0.34
CD48-203ENST00000613788 GPATCH4Q5T3I0 446 aaKnown RBP17.15■□□□□ 0.34
CD48-203ENST00000613788 PAXIP1Q6ZW49 1069 aaPredicted RBP17.15■□□□□ 0.34
CD48-203ENST00000613788 PROCA1Q8NCQ7 364 aaPredicted RBP17.15■□□□□ 0.34
CD48-203ENST00000613788 BMP3P12645 472 aa17.14■□□□□ 0.33
CD48-203ENST00000613788 GNAQP50148 359 aa17.14■□□□□ 0.33
CD48-203ENST00000613788 MKRN3Q13064 507 aaKnown RBP17.14■□□□□ 0.33
CD48-203ENST00000613788 STK3Q13188 491 aa17.14■□□□□ 0.33
CD48-203ENST00000613788 GRM4Q14833 912 aa17.14■□□□□ 0.33
CD48-203ENST00000613788 ME3Q16798 604 aa17.14■□□□□ 0.33
CD48-203ENST00000613788 CCDC96Q2M329 555 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms