RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 ORC4O43929 436 aa19.99■□□□□ 0.79
TRIM28-215ENST00000601150 ECM2O94769 699 aaPredicted RBP19.99■□□□□ 0.79
TRIM28-215ENST00000601150 TFAP4Q01664 338 aa19.99■□□□□ 0.79
TRIM28-215ENST00000601150 FAM47AQ5JRC9 791 aa19.99■□□□□ 0.79
TRIM28-215ENST00000601150 PTPN22Q9Y2R2 807 aa19.99■□□□□ 0.79
TRIM28-215ENST00000601150 RLFQ13129 1914 aa19.98■□□□□ 0.79
TRIM28-215ENST00000601150 FMNL1O95466 1100 aaPredicted RBP19.98■□□□□ 0.79
TRIM28-215ENST00000601150 FGRP09769 529 aa19.98■□□□□ 0.79
TRIM28-215ENST00000601150 CTGFP29279 349 aa19.98■□□□□ 0.79
TRIM28-215ENST00000601150 FCGRTP55899 365 aa19.98■□□□□ 0.79
TRIM28-215ENST00000601150 HAND2P61296 217 aa19.98■□□□□ 0.79
TRIM28-215ENST00000601150 KIAA1755Q5JYT7 1200 aa19.98■□□□□ 0.79
TRIM28-215ENST00000601150 CEP95Q96GE4 821 aa19.98■□□□□ 0.79
TRIM28-215ENST00000601150 TRIM47Q96LD4 638 aa19.98■□□□□ 0.79
TRIM28-215ENST00000601150 IL25Q9H293 177 aa19.98■□□□□ 0.79
TRIM28-215ENST00000601150 GOPCQ9HD26 462 aa19.98■□□□□ 0.79
TRIM28-215ENST00000601150 INCENPQ9NQS7 918 aa19.98■□□□□ 0.79
TRIM28-215ENST00000601150 MORF4L1Q9UBU8 362 aa19.98■□□□□ 0.79
TRIM28-215ENST00000601150 HPS5Q9UPZ3 1129 aa19.98■□□□□ 0.79
TRIM28-215ENST00000601150 TSPY2A6NKD2 308 aa19.97■□□□□ 0.79
TRIM28-215ENST00000601150 ZNF213O14771 459 aa19.97■□□□□ 0.79
TRIM28-215ENST00000601150 PRMT2P55345 433 aa19.97■□□□□ 0.79
TRIM28-215ENST00000601150 BMP2KLQ5H9B9 411 aa19.97■□□□□ 0.79
TRIM28-215ENST00000601150 SPICE1Q8N0Z3 855 aa19.97■□□□□ 0.79
TRIM28-215ENST00000601150 TANGO6Q9C0B7 1094 aa19.97■□□□□ 0.79
TRIM28-215ENST00000601150 MTMR4Q9NYA4 1195 aa19.97■□□□□ 0.79
TRIM28-215ENST00000601150 CLIP2Q9UDT6 1046 aa19.97■□□□□ 0.79
TRIM28-215ENST00000601150 CTNNA3Q9UI47 895 aa19.97■□□□□ 0.79
TRIM28-215ENST00000601150 TACC3Q9Y6A5 838 aa19.97■□□□□ 0.79
TRIM28-215ENST00000601150 WDR46O15213 610 aaKnown RBP19.96■□□□□ 0.79
TRIM28-215ENST00000601150 RANBP6O60518 1105 aaKnown RBP19.96■□□□□ 0.79
TRIM28-215ENST00000601150 TTLL1O95922 423 aa19.96■□□□□ 0.79
TRIM28-215ENST00000601150 PCP11498 1178 aaKnown RBP19.96■□□□□ 0.79
TRIM28-215ENST00000601150 HOXD10P28358 340 aa19.96■□□□□ 0.79
TRIM28-215ENST00000601150 PPP4R3BQ5MIZ7 849 aa19.96■□□□□ 0.79
TRIM28-215ENST00000601150 AKNAD1Q5T1N1 836 aa19.96■□□□□ 0.79
TRIM28-215ENST00000601150 NBPF3Q9H094 633 aa19.96■□□□□ 0.79
TRIM28-215ENST00000601150 TOMM22Q9NS69 142 aa19.96■□□□□ 0.79
TRIM28-215ENST00000601150 PPP4R2Q9NY27 417 aa19.96■□□□□ 0.79
TRIM28-215ENST00000601150 RBPJLQ9UBG7 517 aa19.96■□□□□ 0.79
TRIM28-215ENST00000601150 SYNPO2Q9UMS6 1093 aa19.96■□□□□ 0.79
TRIM28-215ENST00000601150 RAD21O60216 631 aa19.95■□□□□ 0.78
TRIM28-215ENST00000601150 COG2Q14746 738 aa19.95■□□□□ 0.78
TRIM28-215ENST00000601150 RRP12Q5JTH9 1297 aaKnown RBP19.95■□□□□ 0.78
TRIM28-215ENST00000601150 MFSD6Q6ZSS7 791 aa19.95■□□□□ 0.78
TRIM28-215ENST00000601150 TBC1D10CQ8IV04 446 aa19.95■□□□□ 0.78
TRIM28-215ENST00000601150 GPRC5AQ8NFJ5 357 aa19.95■□□□□ 0.78
TRIM28-215ENST00000601150 STAG1Q8WVM7 1258 aa19.95■□□□□ 0.78
TRIM28-215ENST00000601150 MKL1Q969V6 931 aa19.95■□□□□ 0.78
TRIM28-215ENST00000601150 RNF41Q9H4P4 317 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-215ENST00000601150 A0A0G2JMZ2 1700 aa19.95■□□□□ 0.78
TRIM28-215ENST00000601150 DOCK3Q8IZD9 2030 aa19.94■□□□□ 0.78
TRIM28-215ENST00000601150 CCDC85CA6NKD9 419 aa19.94■□□□□ 0.78
TRIM28-215ENST00000601150 SGSM2O43147 1006 aa19.94■□□□□ 0.78
TRIM28-215ENST00000601150 CAPN15O75808 1086 aa19.94■□□□□ 0.78
TRIM28-215ENST00000601150 IMMTQ16891 758 aaKnown RBP19.94■□□□□ 0.78
TRIM28-215ENST00000601150 LBX2Q6XYB7 198 aa19.94■□□□□ 0.78
TRIM28-215ENST00000601150 PAGR1Q9BTK6 254 aa19.94■□□□□ 0.78
TRIM28-215ENST00000601150 TXNRD2Q9NNW7 524 aa19.94■□□□□ 0.78
TRIM28-215ENST00000601150 HOXC10Q9NYD6 342 aa19.94■□□□□ 0.78
TRIM28-215ENST00000601150 SRRDQ9UH36 339 aa19.94■□□□□ 0.78
TRIM28-215ENST00000601150 RABGAP1Q9Y3P9 1069 aa19.94■□□□□ 0.78
TRIM28-215ENST00000601150 SPDYE16A6NNV3 312 aaPredicted RBP19.93■□□□□ 0.78
TRIM28-215ENST00000601150 F5H6K3 240 aa19.93■□□□□ 0.78
TRIM28-215ENST00000601150 TNPO2O14787 897 aaKnown RBP19.93■□□□□ 0.78
TRIM28-215ENST00000601150 ERVK-9P63128 1117 aa19.93■□□□□ 0.78
TRIM28-215ENST00000601150 ERVK-24P63145 666 aa19.93■□□□□ 0.78
TRIM28-215ENST00000601150 KLRC3Q07444 240 aa19.93■□□□□ 0.78
TRIM28-215ENST00000601150 POTEEQ6S8J3 1075 aa19.93■□□□□ 0.78
TRIM28-215ENST00000601150 PTCH2Q9Y6C5 1203 aa19.93■□□□□ 0.78
TRIM28-215ENST00000601150 MYPNQ86TC9 1320 aa19.93■□□□□ 0.78
TRIM28-215ENST00000601150 COL11A1P12107 1806 aaPredicted RBP19.92■□□□□ 0.78
TRIM28-215ENST00000601150 PEX10O60683 326 aa19.92■□□□□ 0.78
TRIM28-215ENST00000601150 FLOT1O75955 427 aa19.92■□□□□ 0.78
TRIM28-215ENST00000601150 NDUFB10O96000 172 aa19.92■□□□□ 0.78
TRIM28-215ENST00000601150 FAM83BQ5T0W9 1011 aa19.92■□□□□ 0.78
TRIM28-215ENST00000601150 LRRC47Q8N1G4 583 aaKnown RBP19.92■□□□□ 0.78
TRIM28-215ENST00000601150 GMCL1P1Q8NEA9 526 aa19.92■□□□□ 0.78
TRIM28-215ENST00000601150 COA7Q96BR5 231 aa19.92■□□□□ 0.78
TRIM28-215ENST00000601150 IL17RBQ9NRM6 502 aa19.92■□□□□ 0.78
TRIM28-215ENST00000601150 NMT2O60551 498 aa19.91■□□□□ 0.78
TRIM28-215ENST00000601150 CNMDO75829 334 aa19.91■□□□□ 0.78
TRIM28-215ENST00000601150 DSG3P32926 999 aa19.91■□□□□ 0.78
TRIM28-215ENST00000601150 NT5C2P49902 561 aa19.91■□□□□ 0.78
TRIM28-215ENST00000601150 PTH1RQ03431 593 aa19.91■□□□□ 0.78
TRIM28-215ENST00000601150 PRKCZQ05513 592 aa19.91■□□□□ 0.78
TRIM28-215ENST00000601150 STX8Q9UNK0 236 aa19.91■□□□□ 0.78
TRIM28-215ENST00000601150 PLXNB2O15031 1838 aa19.9■□□□□ 0.78
TRIM28-215ENST00000601150 MAPK4P31152 587 aa19.9■□□□□ 0.78
TRIM28-215ENST00000601150 CCNA1P78396 465 aa19.9■□□□□ 0.78
TRIM28-215ENST00000601150 Q3C1V9 767 aa19.9■□□□□ 0.78
TRIM28-215ENST00000601150 CCAR1Q8IX12 1150 aaKnown RBP19.9■□□□□ 0.78
TRIM28-215ENST00000601150 MB21D1Q8N884 522 aa19.9■□□□□ 0.78
TRIM28-215ENST00000601150 RAET1EQ8TD07 263 aa19.9■□□□□ 0.78
TRIM28-215ENST00000601150 ESR2Q92731 530 aa19.9■□□□□ 0.78
TRIM28-215ENST00000601150 NUP88Q99567 741 aaPredicted RBP19.9■□□□□ 0.78
TRIM28-215ENST00000601150 ESYT1Q9BSJ8 1104 aa19.9■□□□□ 0.78
TRIM28-215ENST00000601150 TCP11L1Q9NUJ3 509 aa19.9■□□□□ 0.78
TRIM28-215ENST00000601150 BTBD7Q9P203 1132 aa19.9■□□□□ 0.78
TRIM28-215ENST00000601150 GABRQQ9UN88 632 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms