RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PDHXO00330 501 aa22.8■■□□□ 1.24
UPF1-209ENST00000600310 FOXN1O15353 648 aa22.8■■□□□ 1.24
UPF1-209ENST00000600310 ZKSCAN1P17029 563 aaPredicted RBP22.8■■□□□ 1.24
UPF1-209ENST00000600310 CCDC178Q5BJE1 867 aa22.8■■□□□ 1.24
UPF1-209ENST00000600310 TREML2Q5T2D2 321 aa22.8■■□□□ 1.24
UPF1-209ENST00000600310 RASEFQ8IZ41 740 aa22.8■■□□□ 1.24
UPF1-209ENST00000600310 LPAR1Q92633 364 aa22.8■■□□□ 1.24
UPF1-209ENST00000600310 TTC14Q96N46 770 aa22.8■■□□□ 1.24
UPF1-209ENST00000600310 PTPRFP10586 1907 aa22.8■■□□□ 1.24
UPF1-209ENST00000600310 TRPA1O75762 1119 aa22.79■■□□□ 1.24
UPF1-209ENST00000600310 HOXA7P31268 230 aaPredicted RBP22.79■■□□□ 1.24
UPF1-209ENST00000600310 CYB5R4Q7L1T6 521 aa22.79■■□□□ 1.24
UPF1-209ENST00000600310 CFHR5Q9BXR6 569 aa22.79■■□□□ 1.24
UPF1-209ENST00000600310 GOPCQ9HD26 462 aa22.79■■□□□ 1.24
UPF1-209ENST00000600310 STX8Q9UNK0 236 aa22.79■■□□□ 1.24
UPF1-209ENST00000600310 VCAM1P19320 739 aa22.78■■□□□ 1.24
UPF1-209ENST00000600310 PABPC4Q13310 644 aaKnown RBP eCLIP22.78■■□□□ 1.24
UPF1-209ENST00000600310 KIAA1755Q5JYT7 1200 aa22.78■■□□□ 1.24
UPF1-209ENST00000600310 RCSD1Q6JBY9 416 aa22.78■■□□□ 1.24
UPF1-209ENST00000600310 DGKHQ86XP1 1220 aa22.78■■□□□ 1.24
UPF1-209ENST00000600310 MB21D2Q8IYB1 491 aaPredicted RBP22.78■■□□□ 1.24
UPF1-209ENST00000600310 LRRC47Q8N1G4 583 aaKnown RBP22.78■■□□□ 1.24
UPF1-209ENST00000600310 ANKS1AQ92625 1134 aa22.78■■□□□ 1.24
UPF1-209ENST00000600310 ZSCAN10Q96SZ4 725 aaPredicted RBP22.78■■□□□ 1.24
UPF1-209ENST00000600310 ZKSCAN3Q9BRR0 538 aa22.78■■□□□ 1.24
UPF1-209ENST00000600310 F5H6K3 240 aa22.77■■□□□ 1.24
UPF1-209ENST00000600310 KLRC3Q07444 240 aa22.77■■□□□ 1.24
UPF1-209ENST00000600310 KRT32Q14532 448 aa22.77■■□□□ 1.24
UPF1-209ENST00000600310 TAF1CQ15572 869 aaPredicted RBP22.77■■□□□ 1.24
UPF1-209ENST00000600310 GMCL1P1Q8NEA9 526 aa22.77■■□□□ 1.24
UPF1-209ENST00000600310 UBAC1Q9BSL1 405 aa22.77■■□□□ 1.24
UPF1-209ENST00000600310 ZFYVE28Q9HCC9 887 aa22.77■■□□□ 1.24
UPF1-209ENST00000600310 LOC285556D6RIA3 1793 aa22.76■■□□□ 1.23
UPF1-209ENST00000600310 SEC24BO95487 1268 aa22.76■■□□□ 1.23
UPF1-209ENST00000600310 TOP1P11387 765 aaKnown RBP22.76■■□□□ 1.23
UPF1-209ENST00000600310 MCCP23508 829 aa22.76■■□□□ 1.23
UPF1-209ENST00000600310 NEK1Q96PY6 1258 aa22.76■■□□□ 1.23
UPF1-209ENST00000600310 PARK7Q99497 189 aaKnown RBP22.76■■□□□ 1.23
UPF1-209ENST00000600310 TMEM47Q9BQJ4 181 aa22.76■■□□□ 1.23
UPF1-209ENST00000600310 PNMA3Q9UL41 463 aa22.76■■□□□ 1.23
UPF1-209ENST00000600310 SNX14Q9Y5W7 946 aa22.76■■□□□ 1.23
UPF1-209ENST00000600310 USP17L15C9J2P7 530 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 USP17L13C9JLJ4 530 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 USP17L11C9JVI0 530 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 USP17L18D6R9N7 530 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 USP17L22D6RA61 530 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 USP17L17D6RBQ6 530 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 USP17L19D6RCP7 530 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 USP17L20D6RJB6 530 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 WDR46O15213 610 aaKnown RBP22.75■■□□□ 1.23
UPF1-209ENST00000600310 TBC1D8O95759 1140 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 NDUFB10O96000 172 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 OSBPP22059 807 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 ANTXR2P58335 489 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 USP17L24Q0WX57 530 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 CRHR2Q13324 411 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 SPICE1Q8N0Z3 855 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 ENAHQ8N8S7 591 aaPredicted RBP22.75■■□□□ 1.23
UPF1-209ENST00000600310 RPAP3Q9H6T3 665 aaPredicted RBP22.75■■□□□ 1.23
UPF1-209ENST00000600310 PRDM10Q9NQV6 1147 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 TNKSO95271 1327 aa22.75■■□□□ 1.23
UPF1-209ENST00000600310 MCM5P33992 734 aa22.74■■□□□ 1.23
UPF1-209ENST00000600310 CTCFP49711 727 aaPredicted RBP22.74■■□□□ 1.23
UPF1-209ENST00000600310 SEC23AQ15436 765 aa22.74■■□□□ 1.23
UPF1-209ENST00000600310 ADCK5Q3MIX3 580 aa22.74■■□□□ 1.23
UPF1-209ENST00000600310 CATSPERGQ6ZRH7 1159 aa22.74■■□□□ 1.23
UPF1-209ENST00000600310 MTA3Q9BTC8 594 aa22.74■■□□□ 1.23
UPF1-209ENST00000600310 ASCC2Q9H1I8 757 aaPredicted RBP22.74■■□□□ 1.23
UPF1-209ENST00000600310 R3HDMLQ9H3Y0 253 aa22.74■■□□□ 1.23
UPF1-209ENST00000600310 RAD21O60216 631 aa22.73■■□□□ 1.23
UPF1-209ENST00000600310 TLR2O60603 784 aa22.73■■□□□ 1.23
UPF1-209ENST00000600310 CYP2C8P10632 490 aa22.73■■□□□ 1.23
UPF1-209ENST00000600310 IRX3P78415 501 aaPredicted RBP22.73■■□□□ 1.23
UPF1-209ENST00000600310 SLFN13Q68D06 897 aa22.73■■□□□ 1.23
UPF1-209ENST00000600310 CHST3Q7LGC8 479 aa22.73■■□□□ 1.23
UPF1-209ENST00000600310 IFIT3O14879 490 aaKnown RBP22.72■■□□□ 1.23
UPF1-209ENST00000600310 COL9A3Q14050 684 aaPredicted RBP22.72■■□□□ 1.23
UPF1-209ENST00000600310 SART3Q15020 963 aaKnown RBP22.72■■□□□ 1.23
UPF1-209ENST00000600310 NOM1Q5C9Z4 860 aaKnown RBP22.72■■□□□ 1.23
UPF1-209ENST00000600310 TSKSQ9UJT2 592 aa22.72■■□□□ 1.23
UPF1-209ENST00000600310 ADGRA2Q96PE1 1338 aa22.72■■□□□ 1.23
UPF1-209ENST00000600310 ERICH2A1L162 156 aa22.71■■□□□ 1.23
UPF1-209ENST00000600310 PRC1O43663 620 aa22.71■■□□□ 1.23
UPF1-209ENST00000600310 HMGB1P09429 215 aaKnown RBP22.71■■□□□ 1.23
UPF1-209ENST00000600310 FAM83BQ5T0W9 1011 aa22.71■■□□□ 1.23
UPF1-209ENST00000600310 IFIT1BQ5T764 474 aaKnown RBP22.71■■□□□ 1.23
UPF1-209ENST00000600310 DHX32Q7L7V1 743 aaKnown RBP22.71■■□□□ 1.23
UPF1-209ENST00000600310 IGDCC4Q8TDY8 1250 aa22.71■■□□□ 1.23
UPF1-209ENST00000600310 GMCL1Q96IK5 515 aa22.71■■□□□ 1.23
UPF1-209ENST00000600310 TMEM87BQ96K49 555 aa22.71■■□□□ 1.23
UPF1-209ENST00000600310 P2RX7Q99572 595 aaKnown RBP22.71■■□□□ 1.23
UPF1-209ENST00000600310 HSPA8P11142 646 aaKnown RBP22.7■■□□□ 1.22
UPF1-209ENST00000600310 TMEM67Q5HYA8 995 aa22.7■■□□□ 1.22
UPF1-209ENST00000600310 SMCR8Q8TEV9 937 aaPredicted RBP22.7■■□□□ 1.22
UPF1-209ENST00000600310 JAKMIP1Q96N16 626 aaKnown RBP22.7■■□□□ 1.22
UPF1-209ENST00000600310 NUP88Q99567 741 aaPredicted RBP22.7■■□□□ 1.22
UPF1-209ENST00000600310 TANGO6Q9C0B7 1094 aa22.7■■□□□ 1.22
UPF1-209ENST00000600310 KAT14Q9H8E8 782 aa22.7■■□□□ 1.22
UPF1-209ENST00000600310 WDR19Q8NEZ3 1342 aa22.7■■□□□ 1.22
UPF1-209ENST00000600310 GPR25O00155 361 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms