RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 INCENPQ9NQS7 918 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 HPS5Q9UPZ3 1129 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 TACC3Q9Y6A5 838 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 PLIN4Q96Q06 1357 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 RAD50Q92878 1312 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 FMNL1O95466 1100 aaPredicted RBP16.44■□□□□ 0.22
UPF1-205ENST00000598209 GNRH1P01148 92 aa16.44■□□□□ 0.22
UPF1-205ENST00000598209 FCGRTP55899 365 aa16.44■□□□□ 0.22
UPF1-205ENST00000598209 HAND2P61296 217 aa16.44■□□□□ 0.22
UPF1-205ENST00000598209 TFAP4Q01664 338 aa16.44■□□□□ 0.22
UPF1-205ENST00000598209 SPICE1Q8N0Z3 855 aa16.44■□□□□ 0.22
UPF1-205ENST00000598209 NEDD1Q8NHV4 660 aa16.44■□□□□ 0.22
UPF1-205ENST00000598209 RUFY2Q8WXA3 655 aa16.44■□□□□ 0.22
UPF1-205ENST00000598209 LPAR1Q92633 364 aa16.44■□□□□ 0.22
UPF1-205ENST00000598209 CEP95Q96GE4 821 aa16.44■□□□□ 0.22
UPF1-205ENST00000598209 DSCC1Q9BVC3 393 aa16.44■□□□□ 0.22
UPF1-205ENST00000598209 NYAP2Q9P242 653 aa16.44■□□□□ 0.22
UPF1-205ENST00000598209 CCDC85CA6NKD9 419 aa16.43■□□□□ 0.22
UPF1-205ENST00000598209 ORC4O43929 436 aa16.43■□□□□ 0.22
UPF1-205ENST00000598209 FGRP09769 529 aa16.43■□□□□ 0.22
UPF1-205ENST00000598209 GTF3C2Q8WUA4 911 aaPredicted RBP16.43■□□□□ 0.22
UPF1-205ENST00000598209 TANGO6Q9C0B7 1094 aa16.43■□□□□ 0.22
UPF1-205ENST00000598209 GOPCQ9HD26 462 aa16.43■□□□□ 0.22
UPF1-205ENST00000598209 MORF4L1Q9UBU8 362 aa16.43■□□□□ 0.22
UPF1-205ENST00000598209 TSPY2A6NKD2 308 aa16.42■□□□□ 0.22
UPF1-205ENST00000598209 WDR46O15213 610 aaKnown RBP16.42■□□□□ 0.22
UPF1-205ENST00000598209 RAD21O60216 631 aa16.42■□□□□ 0.22
UPF1-205ENST00000598209 RANBP6O60518 1105 aaKnown RBP16.42■□□□□ 0.22
UPF1-205ENST00000598209 PEX10O60683 326 aa16.42■□□□□ 0.22
UPF1-205ENST00000598209 HOXD10P28358 340 aa16.42■□□□□ 0.22
UPF1-205ENST00000598209 PAGR1Q9BTK6 254 aa16.42■□□□□ 0.22
UPF1-205ENST00000598209 NBPF3Q9H094 633 aa16.42■□□□□ 0.22
UPF1-205ENST00000598209 TXNRD2Q9NNW7 524 aa16.42■□□□□ 0.22
UPF1-205ENST00000598209 TOMM22Q9NS69 142 aa16.42■□□□□ 0.22
UPF1-205ENST00000598209 MTMR4Q9NYA4 1195 aa16.42■□□□□ 0.22
UPF1-205ENST00000598209 RBPJLQ9UBG7 517 aa16.42■□□□□ 0.22
UPF1-205ENST00000598209 CLIP2Q9UDT6 1046 aa16.42■□□□□ 0.22
UPF1-205ENST00000598209 SRRDQ9UH36 339 aa16.42■□□□□ 0.22
UPF1-205ENST00000598209 PTCH2Q9Y6C5 1203 aa16.42■□□□□ 0.22
UPF1-205ENST00000598209 COL11A1P12107 1806 aaPredicted RBP16.42■□□□□ 0.22
UPF1-205ENST00000598209 SPDYE16A6NNV3 312 aaPredicted RBP16.41■□□□□ 0.22
UPF1-205ENST00000598209 ZNF213O14771 459 aa16.41■□□□□ 0.22
UPF1-205ENST00000598209 TTLL1O95922 423 aa16.41■□□□□ 0.22
UPF1-205ENST00000598209 PRMT2P55345 433 aa16.41■□□□□ 0.22
UPF1-205ENST00000598209 RRP12Q5JTH9 1297 aaKnown RBP16.41■□□□□ 0.22
UPF1-205ENST00000598209 AKNAD1Q5T1N1 836 aa16.41■□□□□ 0.22
UPF1-205ENST00000598209 POTEEQ6S8J3 1075 aa16.41■□□□□ 0.22
UPF1-205ENST00000598209 TBC1D10CQ8IV04 446 aa16.41■□□□□ 0.22
UPF1-205ENST00000598209 GPRC5AQ8NFJ5 357 aa16.41■□□□□ 0.22
UPF1-205ENST00000598209 A0A0G2JMZ2 1700 aa16.41■□□□□ 0.22
UPF1-205ENST00000598209 MYPNQ86TC9 1320 aa16.41■□□□□ 0.22
UPF1-205ENST00000598209 TNPO2O14787 897 aaKnown RBP16.4■□□□□ 0.22
UPF1-205ENST00000598209 PCP11498 1178 aaKnown RBP16.4■□□□□ 0.22
UPF1-205ENST00000598209 ERVK-9P63128 1117 aa16.4■□□□□ 0.22
UPF1-205ENST00000598209 ERVK-24P63145 666 aa16.4■□□□□ 0.22
UPF1-205ENST00000598209 COG2Q14746 738 aa16.4■□□□□ 0.22
UPF1-205ENST00000598209 BMP2KLQ5H9B9 411 aa16.4■□□□□ 0.22
UPF1-205ENST00000598209 ERICH6BQ5W0A0 696 aa16.4■□□□□ 0.22
UPF1-205ENST00000598209 LBX2Q6XYB7 198 aa16.4■□□□□ 0.22
UPF1-205ENST00000598209 MFSD6Q6ZSS7 791 aa16.4■□□□□ 0.22
UPF1-205ENST00000598209 STAG1Q8WVM7 1258 aa16.4■□□□□ 0.22
UPF1-205ENST00000598209 MKL1Q969V6 931 aa16.4■□□□□ 0.22
UPF1-205ENST00000598209 RNF41Q9H4P4 317 aaPredicted RBP16.4■□□□□ 0.22
UPF1-205ENST00000598209 CTNNA3Q9UI47 895 aa16.4■□□□□ 0.22
UPF1-205ENST00000598209 RABGAP1Q9Y3P9 1069 aa16.4■□□□□ 0.22
UPF1-205ENST00000598209 PLXNB2O15031 1838 aa16.4■□□□□ 0.22
UPF1-205ENST00000598209 F5H6K3 240 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 SGSM2O43147 1006 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 NMT2O60551 498 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 CNMDO75829 334 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 FLOT1O75955 427 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 NDUFB10O96000 172 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 PRKCZQ05513 592 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 KLRC3Q07444 240 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 IMMTQ16891 758 aaKnown RBP16.39■□□□□ 0.21
UPF1-205ENST00000598209 Q3C1V9 767 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 PPP4R3BQ5MIZ7 849 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 LRRC47Q8N1G4 583 aaKnown RBP16.39■□□□□ 0.21
UPF1-205ENST00000598209 IL17RBQ9NRM6 502 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 PPP4R2Q9NY27 417 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 HOXC10Q9NYD6 342 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 SYNPO2Q9UMS6 1093 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 GABRQQ9UN88 632 aa16.39■□□□□ 0.21
UPF1-205ENST00000598209 DSG3P32926 999 aa16.38■□□□□ 0.21
UPF1-205ENST00000598209 PTH1RQ03431 593 aa16.38■□□□□ 0.21
UPF1-205ENST00000598209 FAM83BQ5T0W9 1011 aa16.38■□□□□ 0.21
UPF1-205ENST00000598209 SAMD1Q6SPF0 538 aaPredicted RBP16.38■□□□□ 0.21
UPF1-205ENST00000598209 RAET1EQ8TD07 263 aa16.38■□□□□ 0.21
UPF1-205ENST00000598209 COA7Q96BR5 231 aa16.38■□□□□ 0.21
UPF1-205ENST00000598209 NUP88Q99567 741 aaPredicted RBP16.38■□□□□ 0.21
UPF1-205ENST00000598209 BTBD7Q9P203 1132 aa16.38■□□□□ 0.21
UPF1-205ENST00000598209 NEDD4P46934 1319 aa16.38■□□□□ 0.21
UPF1-205ENST00000598209 SLC9C1Q4G0N8 1177 aa16.37■□□□□ 0.21
UPF1-205ENST00000598209 GMCL1P1Q8NEA9 526 aa16.37■□□□□ 0.21
UPF1-205ENST00000598209 ATG4CQ96DT6 458 aa16.37■□□□□ 0.21
UPF1-205ENST00000598209 PORCNQ9H237 461 aa16.37■□□□□ 0.21
UPF1-205ENST00000598209 FBXO28Q9NVF7 368 aa16.37■□□□□ 0.21
UPF1-205ENST00000598209 STX8Q9UNK0 236 aa16.37■□□□□ 0.21
UPF1-205ENST00000598209 HTTP42858 3142 aa16.36■□□□□ 0.21
UPF1-205ENST00000598209 MAPK4P31152 587 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms