RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 TTC14Q96N46 770 aa16.9■□□□□ 0.3
VRK3-213ENST00000597215 ZSCAN10Q96SZ4 725 aaPredicted RBP16.9■□□□□ 0.3
VRK3-213ENST00000597215 ZKSCAN3Q9BRR0 538 aa16.9■□□□□ 0.3
VRK3-213ENST00000597215 BEGAINQ9BUH8 593 aa16.9■□□□□ 0.3
VRK3-213ENST00000597215 SLC45A1Q9Y2W3 748 aa16.9■□□□□ 0.3
VRK3-213ENST00000597215 SNX14Q9Y5W7 946 aa16.9■□□□□ 0.3
VRK3-213ENST00000597215 PCNTO95613 3336 aa16.9■□□□□ 0.3
VRK3-213ENST00000597215 TOP1P11387 765 aaKnown RBP16.89■□□□□ 0.29
VRK3-213ENST00000597215 MCM5P33992 734 aa16.89■□□□□ 0.29
VRK3-213ENST00000597215 PABPC4Q13310 644 aaKnown RBP eCLIP16.89■□□□□ 0.29
VRK3-213ENST00000597215 SART3Q15020 963 aaKnown RBP16.89■□□□□ 0.29
VRK3-213ENST00000597215 GPAT2Q6NUI2 795 aa16.89■□□□□ 0.29
VRK3-213ENST00000597215 DGKHQ86XP1 1220 aa16.89■□□□□ 0.29
VRK3-213ENST00000597215 LRRC47Q8N1G4 583 aaKnown RBP16.89■□□□□ 0.29
VRK3-213ENST00000597215 FAM43AQ8N2R8 423 aa16.89■□□□□ 0.29
VRK3-213ENST00000597215 NEK1Q96PY6 1258 aa16.89■□□□□ 0.29
VRK3-213ENST00000597215 TNKSO95271 1327 aa16.89■□□□□ 0.29
VRK3-213ENST00000597215 ERICH2A1L162 156 aa16.88■□□□□ 0.29
VRK3-213ENST00000597215 PDHXO00330 501 aa16.88■□□□□ 0.29
VRK3-213ENST00000597215 RAD21O60216 631 aa16.88■□□□□ 0.29
VRK3-213ENST00000597215 HMGB1P09429 215 aaKnown RBP16.88■□□□□ 0.29
VRK3-213ENST00000597215 VCAM1P19320 739 aa16.88■□□□□ 0.29
VRK3-213ENST00000597215 TREML2Q5T2D2 321 aa16.88■□□□□ 0.29
VRK3-213ENST00000597215 RCSD1Q6JBY9 416 aa16.88■□□□□ 0.29
VRK3-213ENST00000597215 ENAHQ8N8S7 591 aaPredicted RBP16.88■□□□□ 0.29
VRK3-213ENST00000597215 GMCL1P1Q8NEA9 526 aa16.88■□□□□ 0.29
VRK3-213ENST00000597215 MTA3Q9BTC8 594 aa16.88■□□□□ 0.29
VRK3-213ENST00000597215 WBP1LQ9NX94 342 aa16.88■□□□□ 0.29
VRK3-213ENST00000597215 IFIT3O14879 490 aaKnown RBP16.87■□□□□ 0.29
VRK3-213ENST00000597215 WDR46O15213 610 aaKnown RBP16.87■□□□□ 0.29
VRK3-213ENST00000597215 CA12O43570 354 aa16.87■□□□□ 0.29
VRK3-213ENST00000597215 PRC1O43663 620 aa16.87■□□□□ 0.29
VRK3-213ENST00000597215 PSMA5P28066 241 aa16.87■□□□□ 0.29
VRK3-213ENST00000597215 ANTXR2P58335 489 aa16.87■□□□□ 0.29
VRK3-213ENST00000597215 TAF1CQ15572 869 aaPredicted RBP16.87■□□□□ 0.29
VRK3-213ENST00000597215 ADCK5Q3MIX3 580 aa16.87■□□□□ 0.29
VRK3-213ENST00000597215 IFIT1BQ5T764 474 aaKnown RBP16.87■□□□□ 0.29
VRK3-213ENST00000597215 ANKS1AQ92625 1134 aa16.87■□□□□ 0.29
VRK3-213ENST00000597215 JAKMIP1Q96N16 626 aaKnown RBP16.87■□□□□ 0.29
VRK3-213ENST00000597215 TMEM47Q9BQJ4 181 aa16.87■□□□□ 0.29
VRK3-213ENST00000597215 RNF186Q9NXI6 227 aa16.87■□□□□ 0.29
VRK3-213ENST00000597215 SAGE1Q9NXZ1 904 aa16.87■□□□□ 0.29
VRK3-213ENST00000597215 PNMA3Q9UL41 463 aa16.87■□□□□ 0.29
VRK3-213ENST00000597215 USP17L15C9J2P7 530 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 USP17L13C9JLJ4 530 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 USP17L11C9JVI0 530 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 USP17L18D6R9N7 530 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 USP17L22D6RA61 530 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 USP17L17D6RBQ6 530 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 USP17L19D6RCP7 530 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 USP17L20D6RJB6 530 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 F5H6K3 240 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 NDUFB10O96000 172 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 OSBPP22059 807 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 HOXA7P31268 230 aaPredicted RBP16.86■□□□□ 0.29
VRK3-213ENST00000597215 ANAPC15P60006 121 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 KLRC3Q07444 240 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 USP17L24Q0WX57 530 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 SEC23AQ15436 765 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 KIAA1755Q5JYT7 1200 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 CHST3Q7LGC8 479 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 SPICE1Q8N0Z3 855 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 TMEM87BQ96K49 555 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 PARK7Q99497 189 aaKnown RBP16.86■□□□□ 0.29
VRK3-213ENST00000597215 RPAP3Q9H6T3 665 aaPredicted RBP16.86■□□□□ 0.29
VRK3-213ENST00000597215 KAT14Q9H8E8 782 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 UPF2Q9HAU5 1272 aaKnown RBP16.86■□□□□ 0.29
VRK3-213ENST00000597215 WDR19Q8NEZ3 1342 aa16.86■□□□□ 0.29
VRK3-213ENST00000597215 TRPA1O75762 1119 aa16.85■□□□□ 0.29
VRK3-213ENST00000597215 IRX3P78415 501 aaPredicted RBP16.85■□□□□ 0.29
VRK3-213ENST00000597215 WTAPQ15007 396 aa16.85■□□□□ 0.29
VRK3-213ENST00000597215 TMEM67Q5HYA8 995 aa16.85■□□□□ 0.29
VRK3-213ENST00000597215 SLFN13Q68D06 897 aa16.85■□□□□ 0.29
VRK3-213ENST00000597215 BLOC1S2Q6QNY1 142 aa16.85■□□□□ 0.29
VRK3-213ENST00000597215 DHX32Q7L7V1 743 aaKnown RBP16.85■□□□□ 0.29
VRK3-213ENST00000597215 GMCL1Q96IK5 515 aa16.85■□□□□ 0.29
VRK3-213ENST00000597215 CFHR5Q9BXR6 569 aa16.85■□□□□ 0.29
VRK3-213ENST00000597215 ZFYVE28Q9HCC9 887 aa16.85■□□□□ 0.29
VRK3-213ENST00000597215 CASTP20810 708 aaKnown RBP16.84■□□□□ 0.29
VRK3-213ENST00000597215 CATSPERGQ6ZRH7 1159 aa16.84■□□□□ 0.29
VRK3-213ENST00000597215 PNMA1Q8ND90 353 aa16.84■□□□□ 0.29
VRK3-213ENST00000597215 IGDCC4Q8TDY8 1250 aa16.84■□□□□ 0.29
VRK3-213ENST00000597215 TANGO6Q9C0B7 1094 aa16.84■□□□□ 0.29
VRK3-213ENST00000597215 ASCC2Q9H1I8 757 aaPredicted RBP16.84■□□□□ 0.29
VRK3-213ENST00000597215 SH2B2O14492 632 aaPredicted RBP16.83■□□□□ 0.28
VRK3-213ENST00000597215 SLC1A4P43007 532 aa16.83■□□□□ 0.28
VRK3-213ENST00000597215 EXOSC10Q01780 885 aaKnown RBP16.83■□□□□ 0.28
VRK3-213ENST00000597215 CRHR2Q13324 411 aa16.83■□□□□ 0.28
VRK3-213ENST00000597215 COL9A3Q14050 684 aaPredicted RBP16.83■□□□□ 0.28
VRK3-213ENST00000597215 FAM83BQ5T0W9 1011 aa16.83■□□□□ 0.28
VRK3-213ENST00000597215 TMTC2Q8N394 836 aa16.83■□□□□ 0.28
VRK3-213ENST00000597215 SMCR8Q8TEV9 937 aaPredicted RBP16.83■□□□□ 0.28
VRK3-213ENST00000597215 DCAF4Q8WV16 495 aa16.83■□□□□ 0.28
VRK3-213ENST00000597215 BACH2Q9BYV9 841 aa16.83■□□□□ 0.28
VRK3-213ENST00000597215 TM6SF1Q9BZW5 370 aa16.83■□□□□ 0.28
VRK3-213ENST00000597215 MTMR7Q9Y216 660 aa16.83■□□□□ 0.28
VRK3-213ENST00000597215 HSPA1AP0DMV8 641 aaKnown RBP16.82■□□□□ 0.28
VRK3-213ENST00000597215 HSPA1BP0DMV9 641 aaKnown RBP16.82■□□□□ 0.28
VRK3-213ENST00000597215 CYP2C8P10632 490 aa16.82■□□□□ 0.28
VRK3-213ENST00000597215 BMP3P12645 472 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms