RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 NBPF3Q9H094 633 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 RPAP3Q9H6T3 665 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 KANSL2Q9H9L4 492 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 ARHGEF10LQ9HCE6 1279 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 DIAPH3Q9NSV4 1193 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 RBPJLQ9UBG7 517 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 SRRDQ9UH36 339 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 ANAPC4Q9UJX5 808 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 CNMDO75829 334 aa13.08□□□□□ -0.32
SHKBP1-206ENST00000595523 FMNL1O95466 1100 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-206ENST00000595523 FCGRTP55899 365 aa13.08□□□□□ -0.32
SHKBP1-206ENST00000595523 PRKCZQ05513 592 aa13.08□□□□□ -0.32
SHKBP1-206ENST00000595523 ARHGEF6Q15052 776 aa13.08□□□□□ -0.32
SHKBP1-206ENST00000595523 SPICE1Q8N0Z3 855 aa13.08□□□□□ -0.32
SHKBP1-206ENST00000595523 VCPKMTQ9H867 229 aa13.08□□□□□ -0.32
SHKBP1-206ENST00000595523 GABRQQ9UN88 632 aa13.08□□□□□ -0.32
SHKBP1-206ENST00000595523 MYPNQ86TC9 1320 aa13.08□□□□□ -0.32
SHKBP1-206ENST00000595523 SPDYE16A6NNV3 312 aaPredicted RBP13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 HIP1O00291 1037 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 FGRP09769 529 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 PRMT2P55345 433 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 SOX10P56693 466 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 ATP2B2Q01814 1243 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 PDE4BQ07343 736 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 Q3C1V9 767 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 FAM47AQ5JRC9 791 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 LBX2Q6XYB7 198 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 CENPQQ7L2Z9 268 aaPredicted RBP13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 NEDD1Q8NHV4 660 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 NKX2-3Q8TAU0 364 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 ARMC5Q96C12 935 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 CEP95Q96GE4 821 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 SH2D4AQ9H788 454 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 ZNF287Q9HBT7 754 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 NYAP2Q9P242 653 aa13.07□□□□□ -0.32
SHKBP1-206ENST00000595523 SLC3A2P08195 630 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 ERVK-9P63128 1117 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 ERVK-24P63145 666 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 TFAP4Q01664 338 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 ZNF444Q8N0Y2 327 aaPredicted RBP13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 SH3TC2Q8TF17 1288 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 LPAR1Q92633 364 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 ZNF333Q96JL9 665 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 PAGR1Q9BTK6 254 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 TANGO6Q9C0B7 1094 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 PORCNQ9H237 461 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 MTMR4Q9NYA4 1195 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 BTBD7Q9P203 1132 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 SMCHD1A6NHR9 2005 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 ZNF236Q9UL36 1845 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 PLXNA1Q9UIW2 1896 aa13.06□□□□□ -0.32
SHKBP1-206ENST00000595523 TNPO2O14787 897 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-206ENST00000595523 WDR46O15213 610 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-206ENST00000595523 ORC4O43929 436 aa13.05□□□□□ -0.32
SHKBP1-206ENST00000595523 CHMLP26374 656 aa13.05□□□□□ -0.32
SHKBP1-206ENST00000595523 MFAP1P55081 439 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-206ENST00000595523 HAND2P61296 217 aa13.05□□□□□ -0.32
SHKBP1-206ENST00000595523 SLC9C1Q4G0N8 1177 aa13.05□□□□□ -0.32
SHKBP1-206ENST00000595523 TBC1D10CQ8IV04 446 aa13.05□□□□□ -0.32
SHKBP1-206ENST00000595523 GPRC5AQ8NFJ5 357 aa13.05□□□□□ -0.32
SHKBP1-206ENST00000595523 GTF3C2Q8WUA4 911 aaPredicted RBP13.05□□□□□ -0.32
SHKBP1-206ENST00000595523 MKL1Q969V6 931 aa13.05□□□□□ -0.32
SHKBP1-206ENST00000595523 IL17RBQ9NRM6 502 aa13.05□□□□□ -0.32
SHKBP1-206ENST00000595523 RABGAP1Q9Y3P9 1069 aa13.05□□□□□ -0.32
SHKBP1-206ENST00000595523 NMT2O60551 498 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 TSPY3P0CV98 308 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 TSPY8P0CW00 308 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 HOXD10P28358 340 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 DSG3P32926 999 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 FLT3LGP49771 235 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 RGS19P49795 217 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 COG2Q14746 738 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 FAM83BQ5T0W9 1011 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 NUP88Q99567 741 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 DSCC1Q9BVC3 393 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 GOPCQ9HD26 462 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 FBXO28Q9NVF7 368 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 CLIP2Q9UDT6 1046 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 GJD2Q9UKL4 321 aa13.04□□□□□ -0.32
SHKBP1-206ENST00000595523 F5H6K3 240 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 FLOT1O75955 427 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 TTLL1O95922 423 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 NDUFB10O96000 172 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 NOVP48745 357 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 KLRC3Q07444 240 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 IRF5Q13568 498 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 LRRC47Q8N1G4 583 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 RAET1EQ8TD07 263 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 STAG1Q8WVM7 1258 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 COA7Q96BR5 231 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 ATG4CQ96DT6 458 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 FRMPD3Q5JV73 1810 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 NEDD4P46934 1319 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 RAD50Q92878 1312 aa13.03□□□□□ -0.32
SHKBP1-206ENST00000595523 POTEFA5A3E0 1075 aa13.02□□□□□ -0.33
SHKBP1-206ENST00000595523 TSPY2A6NKD2 308 aa13.02□□□□□ -0.33
SHKBP1-206ENST00000595523 RAD21O60216 631 aa13.02□□□□□ -0.33
SHKBP1-206ENST00000595523 RANBP6O60518 1105 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-206ENST00000595523 ELNP15502 786 aa13.02□□□□□ -0.33
SHKBP1-206ENST00000595523 GRK4P32298 578 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms