RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 SPECC1Q5M775 1068 aa22.56■■□□□ 1.2
CLIP3-206ENST00000593074 ZNF444Q8N0Y2 327 aaPredicted RBP22.56■■□□□ 1.2
CLIP3-206ENST00000593074 C17orf53Q8N3J3 647 aaPredicted RBP22.56■■□□□ 1.2
CLIP3-206ENST00000593074 SAP30BPQ9UHR5 308 aaKnown RBP22.56■■□□□ 1.2
CLIP3-206ENST00000593074 FOCADQ5VW36 1801 aa22.56■■□□□ 1.2
CLIP3-206ENST00000593074 SNED1Q8TER0 1413 aa22.56■■□□□ 1.2
CLIP3-206ENST00000593074 IKBKBO14920 756 aa22.56■■□□□ 1.2
CLIP3-206ENST00000593074 TPM2P07951 284 aa22.56■■□□□ 1.2
CLIP3-206ENST00000593074 RASA1P20936 1047 aa22.56■■□□□ 1.2
CLIP3-206ENST00000593074 NCAPHQ15003 741 aa22.56■■□□□ 1.2
CLIP3-206ENST00000593074 C2CD5Q86YS7 1000 aa22.56■■□□□ 1.2
CLIP3-206ENST00000593074 ZNF287Q9HBT7 754 aa22.56■■□□□ 1.2
CLIP3-206ENST00000593074 R3HCC1Q9Y3T6 440 aaKnown RBP22.56■■□□□ 1.2
CLIP3-206ENST00000593074 TSPY3P0CV98 308 aa22.55■■□□□ 1.2
CLIP3-206ENST00000593074 TSPY8P0CW00 308 aa22.55■■□□□ 1.2
CLIP3-206ENST00000593074 RHBDL3P58872 404 aa22.55■■□□□ 1.2
CLIP3-206ENST00000593074 GRM4Q14833 912 aa22.55■■□□□ 1.2
CLIP3-206ENST00000593074 CCDC144BQ3MJ40 725 aa22.55■■□□□ 1.2
CLIP3-206ENST00000593074 HOOK1Q9UJC3 728 aaKnown RBP22.55■■□□□ 1.2
CLIP3-206ENST00000593074 FLT1P17948 1338 aa22.55■■□□□ 1.2
CLIP3-206ENST00000593074 SMTNL1A8MU46 457 aa22.54■■□□□ 1.2
CLIP3-206ENST00000593074 G3V3G9 751 aa22.54■■□□□ 1.2
CLIP3-206ENST00000593074 H0YIN7 160 aa22.54■■□□□ 1.2
CLIP3-206ENST00000593074 DCAF8Q5TAQ9 597 aa22.54■■□□□ 1.2
CLIP3-206ENST00000593074 SLC44A5Q8NCS7 719 aa22.54■■□□□ 1.2
CLIP3-206ENST00000593074 EYA3Q99504 573 aa22.54■■□□□ 1.2
CLIP3-206ENST00000593074 RGS17Q9UGC6 210 aaPredicted RBP22.54■■□□□ 1.2
CLIP3-206ENST00000593074 ATP2B1P20020 1258 aa22.54■■□□□ 1.2
CLIP3-206ENST00000593074 SLC15A2Q16348 729 aa22.54■■□□□ 1.2
CLIP3-206ENST00000593074 DOK7Q18PE1 504 aa22.54■■□□□ 1.2
CLIP3-206ENST00000593074 C16orf86Q6ZW13 317 aa22.54■■□□□ 1.2
CLIP3-206ENST00000593074 FOXP4Q8IVH2 680 aaPredicted RBP22.54■■□□□ 1.2
CLIP3-206ENST00000593074 CSRNP2Q9H175 543 aa22.54■■□□□ 1.2
CLIP3-206ENST00000593074 QSER1Q2KHR3 1735 aa22.54■■□□□ 1.2
CLIP3-206ENST00000593074 USP17L3A6NCW0 530 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 USP17L4A6NCW7 530 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 USP17L1Q7RTZ2 530 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 POLR2DO15514 142 aaKnown RBP22.53■■□□□ 1.2
CLIP3-206ENST00000593074 GNAQP50148 359 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 TPM4P67936 248 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 LRMPQ12912 555 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 NT5DC1Q5TFE4 455 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 STYK1Q6J9G0 422 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 POTEAQ6S8J7 498 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 FERMT2Q96AC1 680 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 SH3GLB2Q9NR46 395 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 MAD2L2Q9UI95 211 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 DAGLAQ9Y4D2 1042 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 PCDHA5Q9Y5H7 936 aa22.53■■□□□ 1.2
CLIP3-206ENST00000593074 TNS1Q9HBL0 1735 aaKnown RBP22.52■■□□□ 1.2
CLIP3-206ENST00000593074 WNT7AO00755 349 aa22.52■■□□□ 1.2
CLIP3-206ENST00000593074 TRAPPC10P48553 1259 aa22.52■■□□□ 1.2
CLIP3-206ENST00000593074 POSTNQ15063 836 aa22.52■■□□□ 1.2
CLIP3-206ENST00000593074 EZH2Q15910 746 aaKnown RBP22.52■■□□□ 1.2
CLIP3-206ENST00000593074 NOM1Q5C9Z4 860 aaKnown RBP22.52■■□□□ 1.2
CLIP3-206ENST00000593074 STK32BQ9NY57 414 aa22.52■■□□□ 1.2
CLIP3-206ENST00000593074 MYH1P12882 1939 aa22.51■■□□□ 1.19
CLIP3-206ENST00000593074 ACTN4O43707 911 aaKnown RBP22.51■■□□□ 1.19
CLIP3-206ENST00000593074 NLRP5P59047 1200 aa22.51■■□□□ 1.19
CLIP3-206ENST00000593074 EN1Q05925 392 aaPredicted RBP22.51■■□□□ 1.19
CLIP3-206ENST00000593074 TTC38Q5R3I4 469 aa22.51■■□□□ 1.19
CLIP3-206ENST00000593074 STAG2Q8N3U4 1231 aa22.51■■□□□ 1.19
CLIP3-206ENST00000593074 CACTINQ8WUQ7 758 aaKnown RBP22.51■■□□□ 1.19
CLIP3-206ENST00000593074 CAMKK2Q96RR4 588 aa22.51■■□□□ 1.19
CLIP3-206ENST00000593074 COL11A2P13942 1736 aaPredicted RBP22.51■■□□□ 1.19
CLIP3-206ENST00000593074 FOXN1O15353 648 aa22.51■■□□□ 1.19
CLIP3-206ENST00000593074 VEGFAP15692 232 aaPredicted RBP22.51■■□□□ 1.19
CLIP3-206ENST00000593074 CALML3P27482 149 aa22.51■■□□□ 1.19
CLIP3-206ENST00000593074 CDK8P49336 464 aa22.51■■□□□ 1.19
CLIP3-206ENST00000593074 CERS5Q8N5B7 392 aa22.51■■□□□ 1.19
CLIP3-206ENST00000593074 HSD3B7Q9H2F3 369 aa22.51■■□□□ 1.19
CLIP3-206ENST00000593074 ANO8Q9HCE9 1232 aaPredicted RBP22.51■■□□□ 1.19
CLIP3-206ENST00000593074 BAZ2BQ9UIF8 2168 aaKnown RBP22.51■■□□□ 1.19
CLIP3-206ENST00000593074 F8W031 263 aaPredicted RBP22.5■■□□□ 1.19
CLIP3-206ENST00000593074 NEMFO60524 1076 aa22.5■■□□□ 1.19
CLIP3-206ENST00000593074 ATP2C1P98194 919 aaPredicted RBP22.5■■□□□ 1.19
CLIP3-206ENST00000593074 ISM2Q6H9L7 571 aa22.5■■□□□ 1.19
CLIP3-206ENST00000593074 KANK3Q6NY19 840 aa22.5■■□□□ 1.19
CLIP3-206ENST00000593074 TMEM47Q9BQJ4 181 aa22.5■■□□□ 1.19
CLIP3-206ENST00000593074 SERTAD1Q9UHV2 236 aa22.5■■□□□ 1.19
CLIP3-206ENST00000593074 TTF2Q9UNY4 1162 aaKnown RBP22.5■■□□□ 1.19
CLIP3-206ENST00000593074 RGPD3A6NKT7 1758 aaPredicted RBP22.5■■□□□ 1.19
CLIP3-206ENST00000593074 RGPD4Q7Z3J3 1758 aa22.5■■□□□ 1.19
CLIP3-206ENST00000593074 MYL5Q02045 173 aa22.5■■□□□ 1.19
CLIP3-206ENST00000593074 USP49Q70CQ1 688 aa22.5■■□□□ 1.19
CLIP3-206ENST00000593074 SARSP49591 514 aaKnown RBP22.49■■□□□ 1.19
CLIP3-206ENST00000593074 LRRC8AQ8IWT6 810 aa22.49■■□□□ 1.19
CLIP3-206ENST00000593074 NEDD1Q8NHV4 660 aa22.49■■□□□ 1.19
CLIP3-206ENST00000593074 PALM3A6NDB9 673 aaPredicted RBP22.48■■□□□ 1.19
CLIP3-206ENST00000593074 BMP6P22004 513 aa22.48■■□□□ 1.19
CLIP3-206ENST00000593074 SLC35G1Q2M3R5 365 aa22.48■■□□□ 1.19
CLIP3-206ENST00000593074 DNTTIP2Q5QJE6 756 aaKnown RBP22.48■■□□□ 1.19
CLIP3-206ENST00000593074 PODNQ7Z5L7 613 aa22.48■■□□□ 1.19
CLIP3-206ENST00000593074 MAN1B1Q9UKM7 699 aa22.48■■□□□ 1.19
CLIP3-206ENST00000593074 ZNF174Q15697 407 aa22.48■■□□□ 1.19
CLIP3-206ENST00000593074 PIK3AP1Q6ZUJ8 805 aa22.48■■□□□ 1.19
CLIP3-206ENST00000593074 SPATA20Q8TB22 786 aa22.48■■□□□ 1.19
CLIP3-206ENST00000593074 XPO4Q9C0E2 1151 aaKnown RBP22.48■■□□□ 1.19
CLIP3-206ENST00000593074 IMPACTQ9P2X3 320 aa22.48■■□□□ 1.19
CLIP3-206ENST00000593074 STX8Q9UNK0 236 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms