RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 C16orf86Q6ZW13 317 aa12.56□□□□□ -0.4
LIG3-212ENST00000590181 SMC5Q8IY18 1101 aa12.56□□□□□ -0.4
LIG3-212ENST00000590181 TDHQ8IZJ6 230 aa12.56□□□□□ -0.4
LIG3-212ENST00000590181 SDR42E1Q8WUS8 393 aa12.56□□□□□ -0.4
LIG3-212ENST00000590181 EDC3Q96F86 508 aaKnown RBP12.56□□□□□ -0.4
LIG3-212ENST00000590181 FEZ1Q99689 392 aa12.56□□□□□ -0.4
LIG3-212ENST00000590181 NBPF3Q9H094 633 aa12.56□□□□□ -0.4
LIG3-212ENST00000590181 C11orf49Q9H6J7 331 aa12.56□□□□□ -0.4
LIG3-212ENST00000590181 ARHGEF10LQ9HCE6 1279 aa12.56□□□□□ -0.4
LIG3-212ENST00000590181 RABGAP1Q9Y3P9 1069 aa12.56□□□□□ -0.4
LIG3-212ENST00000590181 EYSQ5T1H1 3165 aa12.55□□□□□ -0.4
LIG3-212ENST00000590181 BAZ2AQ9UIF9 1905 aaKnown RBP12.55□□□□□ -0.4
LIG3-212ENST00000590181 GDF11O95390 407 aa12.55□□□□□ -0.4
LIG3-212ENST00000590181 CDK8P49336 464 aa12.55□□□□□ -0.4
LIG3-212ENST00000590181 NT5C2P49902 561 aa12.55□□□□□ -0.4
LIG3-212ENST00000590181 CATSPERGQ6ZRH7 1159 aa12.55□□□□□ -0.4
LIG3-212ENST00000590181 MB21D1Q8N884 522 aa12.55□□□□□ -0.4
LIG3-212ENST00000590181 PI4K2BQ8TCG2 481 aa12.55□□□□□ -0.4
LIG3-212ENST00000590181 TRIB2Q92519 343 aa12.55□□□□□ -0.4
LIG3-212ENST00000590181 PUS7LQ9H0K6 701 aaKnown RBP12.55□□□□□ -0.4
LIG3-212ENST00000590181 BCL11AQ9H165 835 aa12.55□□□□□ -0.4
LIG3-212ENST00000590181 HMX1Q9NP08 348 aaPredicted RBP12.55□□□□□ -0.4
LIG3-212ENST00000590181 EMILIN3Q9NT22 766 aa12.55□□□□□ -0.4
LIG3-212ENST00000590181 STXBP5LQ9Y2K9 1186 aa12.55□□□□□ -0.4
LIG3-212ENST00000590181 RPTORQ8N122 1335 aa12.55□□□□□ -0.4
LIG3-212ENST00000590181 XRCC5P13010 732 aaKnown RBP12.54□□□□□ -0.4
LIG3-212ENST00000590181 MFAP1P55081 439 aaKnown RBP12.54□□□□□ -0.4
LIG3-212ENST00000590181 HERVK_113P62684 666 aa12.54□□□□□ -0.4
LIG3-212ENST00000590181 LRIT3Q3SXY7 679 aa12.54□□□□□ -0.4
LIG3-212ENST00000590181 CTR9Q6PD62 1173 aa12.54□□□□□ -0.4
LIG3-212ENST00000590181 CCAR1Q8IX12 1150 aaKnown RBP12.54□□□□□ -0.4
LIG3-212ENST00000590181 SOCS4Q8WXH5 440 aa12.54□□□□□ -0.4
LIG3-212ENST00000590181 FSD1Q9BTV5 496 aa12.54□□□□□ -0.4
LIG3-212ENST00000590181 UBE2OQ9C0C9 1292 aaKnown RBP12.54□□□□□ -0.4
LIG3-212ENST00000590181 OSBPL3Q9H4L5 887 aa12.54□□□□□ -0.4
LIG3-212ENST00000590181 HELLSQ9NRZ9 838 aa12.54□□□□□ -0.4
LIG3-212ENST00000590181 PFASO15067 1338 aa12.54□□□□□ -0.4
LIG3-212ENST00000590181 SALL3Q9BXA9 1300 aa12.54□□□□□ -0.4
LIG3-212ENST00000590181 GSG1L2A8MUP6 293 aa12.53□□□□□ -0.4
LIG3-212ENST00000590181 MPHOSPH10O00566 681 aaKnown RBP12.53□□□□□ -0.4
LIG3-212ENST00000590181 GPAA1O43292 621 aa12.53□□□□□ -0.4
LIG3-212ENST00000590181 STRNO43815 780 aa12.53□□□□□ -0.4
LIG3-212ENST00000590181 PRKAR2AP13861 404 aaKnown RBP12.53□□□□□ -0.4
LIG3-212ENST00000590181 PDE1AP54750 535 aa12.53□□□□□ -0.4
LIG3-212ENST00000590181 PDE4BQ07343 736 aa12.53□□□□□ -0.4
LIG3-212ENST00000590181 COG2Q14746 738 aa12.53□□□□□ -0.4
LIG3-212ENST00000590181 ZMYM1Q5SVZ6 1142 aa12.53□□□□□ -0.4
LIG3-212ENST00000590181 OSBP2Q969R2 916 aa12.53□□□□□ -0.4
LIG3-212ENST00000590181 P2RX7Q99572 595 aaKnown RBP12.53□□□□□ -0.4
LIG3-212ENST00000590181 MKNK2Q9HBH9 465 aa12.53□□□□□ -0.4
LIG3-212ENST00000590181 MTMR10Q9NXD2 777 aa12.53□□□□□ -0.4
LIG3-212ENST00000590181 TMX2Q9Y320 296 aa12.53□□□□□ -0.4
LIG3-212ENST00000590181 ROBO3Q96MS0 1386 aa12.53□□□□□ -0.4
LIG3-212ENST00000590181 PRUNE2Q8WUY3 3088 aa12.52□□□□□ -0.4
LIG3-212ENST00000590181 SPTBN5Q9NRC6 3674 aaKnown RBP12.52□□□□□ -0.41
LIG3-212ENST00000590181 PRKAB2O43741 272 aa12.52□□□□□ -0.41
LIG3-212ENST00000590181 PCP11498 1178 aaKnown RBP12.52□□□□□ -0.41
LIG3-212ENST00000590181 ERVK-9P63128 1117 aa12.52□□□□□ -0.41
LIG3-212ENST00000590181 ERVK-24P63145 666 aa12.52□□□□□ -0.41
LIG3-212ENST00000590181 JAG1P78504 1218 aa12.52□□□□□ -0.41
LIG3-212ENST00000590181 SEPT2Q15019 361 aa12.52□□□□□ -0.41
LIG3-212ENST00000590181 CHD1LQ86WJ1 897 aa12.52□□□□□ -0.41
LIG3-212ENST00000590181 ZNF444Q8N0Y2 327 aaPredicted RBP12.52□□□□□ -0.41
LIG3-212ENST00000590181 NUDT12Q9BQG2 462 aa12.52□□□□□ -0.41
LIG3-212ENST00000590181 GOPCQ9HD26 462 aa12.52□□□□□ -0.41
LIG3-212ENST00000590181 OGDHLQ9ULD0 1010 aa12.52□□□□□ -0.41
LIG3-212ENST00000590181 HIP1O00291 1037 aa12.51□□□□□ -0.41
LIG3-212ENST00000590181 WDR46O15213 610 aaKnown RBP12.51□□□□□ -0.41
LIG3-212ENST00000590181 APPP05067 770 aa12.51□□□□□ -0.41
LIG3-212ENST00000590181 ZKSCAN1P17029 563 aaPredicted RBP12.51□□□□□ -0.41
LIG3-212ENST00000590181 VCAM1P19320 739 aa12.51□□□□□ -0.41
LIG3-212ENST00000590181 CYP2B6P20813 491 aa12.51□□□□□ -0.41
LIG3-212ENST00000590181 GUCY1A2P33402 732 aa12.51□□□□□ -0.41
LIG3-212ENST00000590181 TDO2P48775 406 aa12.51□□□□□ -0.41
LIG3-212ENST00000590181 NUCB1Q02818 461 aa12.51□□□□□ -0.41
LIG3-212ENST00000590181 ICA1Q05084 483 aa12.51□□□□□ -0.41
LIG3-212ENST00000590181 ALX1Q15699 326 aa12.51□□□□□ -0.41
LIG3-212ENST00000590181 MAP3K21Q5TCX8 1036 aa12.51□□□□□ -0.41
LIG3-212ENST00000590181 NYAP2Q9P242 653 aa12.51□□□□□ -0.41
LIG3-212ENST00000590181 RBPJLQ9UBG7 517 aa12.51□□□□□ -0.41
LIG3-212ENST00000590181 GJD2Q9UKL4 321 aa12.51□□□□□ -0.41
LIG3-212ENST00000590181 VCANP13611 3396 aa12.5□□□□□ -0.41
LIG3-212ENST00000590181 FDX1P10109 184 aa12.5□□□□□ -0.41
LIG3-212ENST00000590181 COPB2P35606 906 aa12.5□□□□□ -0.41
LIG3-212ENST00000590181 IFNL3Q8IZI9 196 aa12.5□□□□□ -0.41
LIG3-212ENST00000590181 SHCBP1Q8NEM2 672 aa12.5□□□□□ -0.41
LIG3-212ENST00000590181 VCPKMTQ9H867 229 aa12.5□□□□□ -0.41
LIG3-212ENST00000590181 SLC5A4Q9NY91 659 aa12.5□□□□□ -0.41
LIG3-212ENST00000590181 ZNF236Q9UL36 1845 aa12.5□□□□□ -0.41
LIG3-212ENST00000590181 RLFQ13129 1914 aa12.5□□□□□ -0.41
LIG3-212ENST00000590181 A0A0G2JMZ2 1700 aa12.49□□□□□ -0.41
LIG3-212ENST00000590181 SLC15A5A6NIM6 579 aa12.49□□□□□ -0.41
LIG3-212ENST00000590181 COL6A1P12109 1028 aa12.49□□□□□ -0.41
LIG3-212ENST00000590181 MDM2Q00987 491 aaPredicted RBP12.49□□□□□ -0.41
LIG3-212ENST00000590181 MCMDC2Q4G0Z9 681 aa12.49□□□□□ -0.41
LIG3-212ENST00000590181 PLEKHH3Q7Z736 793 aa12.49□□□□□ -0.41
LIG3-212ENST00000590181 MKL1Q969V6 931 aa12.49□□□□□ -0.41
LIG3-212ENST00000590181 DYNLL2Q96FJ2 89 aa12.49□□□□□ -0.41
LIG3-212ENST00000590181 COL25A1Q9BXS0 654 aaPredicted RBP12.49□□□□□ -0.41
LIG3-212ENST00000590181 NAPBQ9H115 298 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms