RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PRRC2BQ5JSZ5 2229 aaKnown RBP5.08□□□□□ -1.6
LIG3-211ENST00000588713 ESPNB1AK53 854 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 IRS4O14654 1257 aaPredicted RBP5.08□□□□□ -1.6
LIG3-211ENST00000588713 KIAA0355O15063 1070 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 XRCC6P12956 609 aaKnown RBP eCLIP5.08□□□□□ -1.6
LIG3-211ENST00000588713 IRS1P35568 1242 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 CALD1Q05682 793 aaKnown RBP5.08□□□□□ -1.6
LIG3-211ENST00000588713 ZP2Q05996 745 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 AIMP1Q12904 312 aaKnown RBP5.08□□□□□ -1.6
LIG3-211ENST00000588713 PPIGQ13427 754 aaKnown RBP eCLIP5.08□□□□□ -1.69e-9■■□□□ 13.3
LIG3-211ENST00000588713 PKN1Q16512 942 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 CC2D1BQ5T0F9 858 aaKnown RBP5.08□□□□□ -1.6
LIG3-211ENST00000588713 RASIP1Q5U651 963 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 DCAF15Q66K64 600 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 NUDT18Q6ZVK8 323 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 C16orf59Q7L2K0 433 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 MCM10Q7L590 875 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 LURAP1LQ8IV03 231 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 FBXL6Q8N531 539 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 SLC44A5Q8NCS7 719 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 SOCS4Q8WXH5 440 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 MAP7D2Q96T17 732 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 ZNF341Q9BYN7 854 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 TBC1D2Q9BYX2 928 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 UPF3BQ9BZI7 483 aaKnown RBP5.08□□□□□ -1.6
LIG3-211ENST00000588713 PANK3Q9H999 370 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 ALG13Q9NP73 1137 aaKnown RBP5.08□□□□□ -1.6
LIG3-211ENST00000588713 ACACBO00763 2458 aa5.08□□□□□ -1.6
LIG3-211ENST00000588713 ANKRD11Q6UB99 2663 aaPredicted RBP5.08□□□□□ -1.6
LIG3-211ENST00000588713 DOCK3Q8IZD9 2030 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 DNAH14Q0VDD8 3507 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 AK9Q5TCS8 1911 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 A0A0G2JLL6 359 aaPredicted RBP5.07□□□□□ -1.6
LIG3-211ENST00000588713 SOBPA7XYQ1 873 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 CYSRT1A8MQ03 144 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 C3orf80F5H4A9 247 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 CXCL11O14625 94 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 MSCO60682 206 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 CSF2RAP15509 400 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 POU3F3P20264 500 aaPredicted RBP5.07□□□□□ -1.6
LIG3-211ENST00000588713 NBL1P41271 181 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 CCT4P50991 539 aaKnown RBP5.07□□□□□ -1.6
LIG3-211ENST00000588713 DMWDQ09019 674 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 CCDC173Q0VFZ6 552 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 COL9A3Q14050 684 aaPredicted RBP5.07□□□□□ -1.6
LIG3-211ENST00000588713 PPP1R18Q6NYC8 613 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 PSRC1Q6PGN9 363 aaPredicted RBP5.07□□□□□ -1.6
LIG3-211ENST00000588713 TRAF7Q6Q0C0 670 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.07□□□□□ -1.6
LIG3-211ENST00000588713 EP400NLQ6ZTU2 488 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 BMP8AQ7Z5Y6 402 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 PRRT2Q7Z6L0 340 aaPredicted RBP5.07□□□□□ -1.6
LIG3-211ENST00000588713 MORC1Q86VD1 984 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 ANKRD18AQ8IVF6 992 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 TRMT44Q8IYL2 757 aaKnown RBP5.07□□□□□ -1.6
LIG3-211ENST00000588713 ARRDC4Q8NCT1 418 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 ZNF516Q92618 1163 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 SLKQ9H2G2 1235 aaPredicted RBP5.07□□□□□ -1.6
LIG3-211ENST00000588713 MTIF3Q9H2K0 278 aaKnown RBP5.07□□□□□ -1.6
LIG3-211ENST00000588713 GRPEL1Q9HAV7 217 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 ADAMTS8Q9UP79 889 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 ZHX2Q9Y6X8 837 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 FRMPD3Q5JV73 1810 aa5.07□□□□□ -1.6
LIG3-211ENST00000588713 MAP1BP46821 2468 aaKnown RBP5.06□□□□□ -1.6
LIG3-211ENST00000588713 ARAP2Q8WZ64 1704 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 TRIM75PA6NK02 468 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 ATP5J2-PTCD1G3V325 749 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 H3BQ06 376 aaPredicted RBP5.06□□□□□ -1.6
LIG3-211ENST00000588713 PEX10O60683 326 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 TIMP1P01033 207 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 CA3P07451 260 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 XRCC5P13010 732 aaKnown RBP5.06□□□□□ -1.6
LIG3-211ENST00000588713 SLC5A1P13866 664 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 AVPR2P30518 371 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 RGS2P41220 211 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 GRB10Q13322 594 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 DCTN1Q14203 1278 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 PROSER3Q2NL68 480 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 SKOR2Q2VWA4 1001 aaPredicted RBP5.06□□□□□ -1.6
LIG3-211ENST00000588713 HERC4Q5GLZ8 1057 aaPredicted RBP5.06□□□□□ -1.6
LIG3-211ENST00000588713 TREML2Q5T2D2 321 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 MFSD14CQ5VZR4 134 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 TRIM67Q6ZTA4 783 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 COPS6Q7L5N1 327 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 OTOP2Q7RTS6 562 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 HSCBQ8IWL3 235 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 CCAR1Q8IX12 1150 aaKnown RBP5.06□□□□□ -1.6
LIG3-211ENST00000588713 DZIP1LQ8IYY4 767 aaKnown RBP5.06□□□□□ -1.6
LIG3-211ENST00000588713 KCNG4Q8TDN1 519 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 RTF1Q92541 710 aaKnown RBP5.06□□□□□ -1.6
LIG3-211ENST00000588713 EDAQ92838 391 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 TRIM44Q96DX7 344 aaPredicted RBP5.06□□□□□ -1.6
LIG3-211ENST00000588713 GBP4Q96PP9 640 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 APBA2Q99767 749 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 HINFPQ9BQA5 517 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 ZMYND15Q9H091 742 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 PDCL3Q9H2J4 239 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 MYH16Q9H6N6 1097 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 CDHR5Q9HBB8 845 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 CWC22Q9HCG8 908 aaKnown RBP5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms