RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 A0A0D9SFI3 127 aa12.91□□□□□ -0.34
CLIP3-203ENST00000586457 A0A1W2PRG0 241 aa12.91□□□□□ -0.34
CLIP3-203ENST00000586457 SMIM22K7EJ46 135 aa12.91□□□□□ -0.34
CLIP3-203ENST00000586457 RANBP6O60518 1105 aaKnown RBP12.91□□□□□ -0.34
CLIP3-203ENST00000586457 FLOT1O75955 427 aa12.91□□□□□ -0.34
CLIP3-203ENST00000586457 RASA1P20936 1047 aa12.91□□□□□ -0.34
CLIP3-203ENST00000586457 GRK4P32298 578 aa12.91□□□□□ -0.34
CLIP3-203ENST00000586457 PLS1Q14651 629 aa12.91□□□□□ -0.34
CLIP3-203ENST00000586457 RRP12Q5JTH9 1297 aaKnown RBP12.91□□□□□ -0.34
CLIP3-203ENST00000586457 SH3TC2Q8TF17 1288 aa12.91□□□□□ -0.34
CLIP3-203ENST00000586457 VCPKMTQ9H867 229 aa12.91□□□□□ -0.34
CLIP3-203ENST00000586457 RABGAP1Q9Y3P9 1069 aa12.91□□□□□ -0.34
CLIP3-203ENST00000586457 IVNS1ABPQ9Y6Y0 642 aa12.91□□□□□ -0.34
CLIP3-203ENST00000586457 MYH8P13535 1937 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 ZNF213O14771 459 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 WDR46O15213 610 aaKnown RBP12.9□□□□□ -0.34
CLIP3-203ENST00000586457 ADCY3O60266 1144 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 TTLL1O95922 423 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 FGAP02671 866 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 CENPBP07199 599 aaPredicted RBP12.9□□□□□ -0.34
CLIP3-203ENST00000586457 HSPD1P10809 573 aaKnown RBP12.9□□□□□ -0.34
CLIP3-203ENST00000586457 FLT3LGP49771 235 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 ERVK-9P63128 1117 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 ERVK-24P63145 666 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 PRKCZQ05513 592 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 CTDSPL2Q05D32 466 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 ALX1Q15699 326 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 FAM47AQ5JRC9 791 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 TTC22Q5TAA0 569 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 MFSD6Q6ZSS7 791 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 CLEC10AQ8IUN9 316 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 SLAIN1Q8ND83 568 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 CCDC136Q96JN2 1154 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 NYAP2Q9P242 653 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 RBPJLQ9UBG7 517 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 MORF4L1Q9UBU8 362 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 CTNNA3Q9UI47 895 aa12.9□□□□□ -0.34
CLIP3-203ENST00000586457 PTPRFP10586 1907 aa12.9□□□□□ -0.35
CLIP3-203ENST00000586457 DDX60LQ5H9U9 1706 aaKnown RBP12.89□□□□□ -0.35
CLIP3-203ENST00000586457 VPS53Q5VIR6 699 aa12.89□□□□□ -0.35
CLIP3-203ENST00000586457 CENPQQ7L2Z9 268 aaPredicted RBP12.89□□□□□ -0.35
CLIP3-203ENST00000586457 MB21D1Q8N884 522 aa12.89□□□□□ -0.35
CLIP3-203ENST00000586457 ARMC5Q96C12 935 aa12.89□□□□□ -0.35
CLIP3-203ENST00000586457 NUDT12Q9BQG2 462 aa12.89□□□□□ -0.35
CLIP3-203ENST00000586457 RNF41Q9H4P4 317 aaPredicted RBP12.89□□□□□ -0.35
CLIP3-203ENST00000586457 GABRQQ9UN88 632 aa12.89□□□□□ -0.35
CLIP3-203ENST00000586457 STX8Q9UNK0 236 aa12.89□□□□□ -0.35
CLIP3-203ENST00000586457 ROBO3Q96MS0 1386 aa12.89□□□□□ -0.35
CLIP3-203ENST00000586457 LOC285556D6RIA3 1793 aa12.89□□□□□ -0.35
CLIP3-203ENST00000586457 F5H6K3 240 aa12.88□□□□□ -0.35
CLIP3-203ENST00000586457 CTGFP29279 349 aa12.88□□□□□ -0.35
CLIP3-203ENST00000586457 KLRC3Q07444 240 aa12.88□□□□□ -0.35
CLIP3-203ENST00000586457 IKQ13123 557 aaPredicted RBP12.88□□□□□ -0.35
CLIP3-203ENST00000586457 IMMTQ16891 758 aaKnown RBP12.88□□□□□ -0.35
CLIP3-203ENST00000586457 PLEKHH3Q7Z736 793 aa12.88□□□□□ -0.35
CLIP3-203ENST00000586457 NEDD1Q8NHV4 660 aa12.88□□□□□ -0.35
CLIP3-203ENST00000586457 SOCS4Q8WXH5 440 aa12.88□□□□□ -0.35
CLIP3-203ENST00000586457 MTMR4Q9NYA4 1195 aa12.88□□□□□ -0.35
CLIP3-203ENST00000586457 ANAPC4Q9UJX5 808 aa12.88□□□□□ -0.35
CLIP3-203ENST00000586457 PCP11498 1178 aaKnown RBP12.87□□□□□ -0.35
CLIP3-203ENST00000586457 CYP2B6P20813 491 aa12.87□□□□□ -0.35
CLIP3-203ENST00000586457 PDE4AP27815 886 aa12.87□□□□□ -0.35
CLIP3-203ENST00000586457 HAND2P61296 217 aa12.87□□□□□ -0.35
CLIP3-203ENST00000586457 CAP1Q01518 475 aa12.87□□□□□ -0.35
CLIP3-203ENST00000586457 IRF5Q13568 498 aa12.87□□□□□ -0.35
CLIP3-203ENST00000586457 KIAA1211Q6ZU35 1233 aa12.87□□□□□ -0.35
CLIP3-203ENST00000586457 ZNF589Q86UQ0 364 aaPredicted RBP12.87□□□□□ -0.35
CLIP3-203ENST00000586457 SIAH1Q8IUQ4 282 aa12.87□□□□□ -0.35
CLIP3-203ENST00000586457 TRMT44Q8IYL2 757 aaKnown RBP12.87□□□□□ -0.35
CLIP3-203ENST00000586457 PXYLP1Q8TE99 480 aa12.87□□□□□ -0.35
CLIP3-203ENST00000586457 CEP95Q96GE4 821 aa12.87□□□□□ -0.35
CLIP3-203ENST00000586457 ZNF333Q96JL9 665 aa12.87□□□□□ -0.35
CLIP3-203ENST00000586457 RNF208Q9H0X6 261 aa12.87□□□□□ -0.35
CLIP3-203ENST00000586457 TXNRD2Q9NNW7 524 aa12.87□□□□□ -0.35
CLIP3-203ENST00000586457 SLC5A4Q9NY91 659 aa12.87□□□□□ -0.35
CLIP3-203ENST00000586457 SPDYE16A6NNV3 312 aaPredicted RBP12.86□□□□□ -0.35
CLIP3-203ENST00000586457 ZBED4O75132 1171 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 ELNP15502 786 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 DSG3P32926 999 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 RGS2P41220 211 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 SLC4A3P48751 1232 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 RGS19P49795 217 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 Q3C1V9 767 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 FAM83BQ5T0W9 1011 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 AKNAD1Q5T1N1 836 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 LBX2Q6XYB7 198 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 DPP9Q86TI2 863 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 NCAPG2Q86XI2 1143 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 PRPF38AQ8NAV1 312 aaKnown RBP12.86□□□□□ -0.35
CLIP3-203ENST00000586457 NKX2-3Q8TAU0 364 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 ESR2Q92731 530 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 SYNPO2Q9UMS6 1093 aa12.86□□□□□ -0.35
CLIP3-203ENST00000586457 STRNO43815 780 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 ORC4O43929 436 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 PEX10O60683 326 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 SLFN13Q68D06 897 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 CASC1Q6TDU7 716 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 GPR142Q7Z601 462 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 LRRC47Q8N1G4 583 aaKnown RBP12.85□□□□□ -0.35
CLIP3-203ENST00000586457 CHURC1Q8WUH1 139 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms