RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	PSMD1	Q99460	953 aa		6.64	□□□□□ -1.35
SS18-223	ENST00000583595	MIR1-1HG	Q9H1L0	117 aa		6.64	□□□□□ -1.35
SS18-223	ENST00000583595	LRRC4C	Q9HCJ2	640 aa		6.64	□□□□□ -1.35
SS18-223	ENST00000583595	CD2AP	Q9Y5K6	639 aa		6.64	□□□□□ -1.35
SS18-223	ENST00000583595		B2RBV5	119 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	CILP	O75339	1184 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	LMNB1	P20700	586 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	CASP7	P55210	303 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	ZNF252P-AS1	Q0IIN9	211 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	TTLL4	Q14679	1199 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	OGFOD3	Q6PK18	319 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	MPRIP	Q6WCQ1	1025 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	CCDC84	Q86UT8	332 aa	Predicted RBP	6.63	□□□□□ -1.35
SS18-223	ENST00000583595	JMY	Q8N9B5	988 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	OR6P1	Q8NGX9	317 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	GRIN3A	Q8TCU5	1115 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	GPBAR1	Q8TDU6	330 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	ACSBG1	Q96GR2	724 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	TMX1	Q9H3N1	280 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	ANTXR1	Q9H6X2	564 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	ZMYM5	Q9UJ78	669 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	SAMM50	Q9Y512	469 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	PTCH2	Q9Y6C5	1203 aa		6.63	□□□□□ -1.35
SS18-223	ENST00000583595	CCDC194	A0A1B0GVG4	234 aa		6.62	□□□□□ -1.35
SS18-223	ENST00000583595	VIL1	P09327	827 aa	Known RBP	6.62	□□□□□ -1.35
SS18-223	ENST00000583595	CDKN1C	P49918	316 aa	Predicted RBP	6.62	□□□□□ -1.35
SS18-223	ENST00000583595	IRAK1	P51617	712 aa		6.62	□□□□□ -1.35
SS18-223	ENST00000583595	CDK5R2	Q13319	367 aa		6.62	□□□□□ -1.35
SS18-223	ENST00000583595	TCEA2	Q15560	299 aa		6.62	□□□□□ -1.35
SS18-223	ENST00000583595	ZC3H12A	Q5D1E8	599 aa	Known RBP	6.62	□□□□□ -1.35
SS18-223	ENST00000583595	C6orf15	Q6UXA7	325 aa	Predicted RBP	6.62	□□□□□ -1.35
SS18-223	ENST00000583595	REC114	Q7Z4M0	266 aa		6.62	□□□□□ -1.35
SS18-223	ENST00000583595	RAVER1	Q8IY67	606 aa	Known RBP	6.62	□□□□□ -1.35
SS18-223	ENST00000583595	REXO1	Q8N1G1	1221 aa	Known RBP	6.62	□□□□□ -1.35
SS18-223	ENST00000583595	PRPF38A	Q8NAV1	312 aa	Known RBP	6.62	□□□□□ -1.35
SS18-223	ENST00000583595	MYH16	Q9H6N6	1097 aa		6.62	□□□□□ -1.35
SS18-223	ENST00000583595	HOMER2	Q9NSB8	354 aa		6.62	□□□□□ -1.35
SS18-223	ENST00000583595	ZNRF3	Q9ULT6	936 aa		6.62	□□□□□ -1.35
SS18-223	ENST00000583595	THRAP3	Q9Y2W1	955 aa	Known RBP	6.62	□□□□□ -1.35
SS18-223	ENST00000583595		A0A1W2PQH9	124 aa		6.61	□□□□□ -1.35
SS18-223	ENST00000583595	GRIN3B	O60391	1043 aa		6.61	□□□□□ -1.35
SS18-223	ENST00000583595	POU3F3	P20264	500 aa	Predicted RBP	6.61	□□□□□ -1.35
SS18-223	ENST00000583595	PTPN11	Q06124	597 aa	Predicted RBP	6.61	□□□□□ -1.35
SS18-223	ENST00000583595	SSRP1	Q08945	709 aa	Known RBP	6.61	□□□□□ -1.35
SS18-223	ENST00000583595	ODR4	Q5SWX8	454 aa		6.61	□□□□□ -1.35
SS18-223	ENST00000583595	MCTP1	Q6DN14	999 aa		6.61	□□□□□ -1.35
SS18-223	ENST00000583595	KRT26	Q7Z3Y9	468 aa		6.61	□□□□□ -1.35
SS18-223	ENST00000583595	RBBP8NL	Q8NC74	664 aa	Predicted RBP	6.61	□□□□□ -1.35
SS18-223	ENST00000583595	TYW1	Q9NV66	732 aa	Known RBP	6.61	□□□□□ -1.35
SS18-223	ENST00000583595	CCDC39	Q9UFE4	941 aa		6.61	□□□□□ -1.35
SS18-223	ENST00000583595	PCOLCE2	Q9UKZ9	415 aa		6.61	□□□□□ -1.35
SS18-223	ENST00000583595	ANGEL1	Q9UNK9	670 aa	Known RBP	6.61	□□□□□ -1.35
SS18-223	ENST00000583595	PCDHB14	Q9Y5E9	798 aa		6.61	□□□□□ -1.35
SS18-223	ENST00000583595	PRNP	P04156	253 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	NEFM	P07197	916 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	FAM153B	P0C7A2	387 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	FAM87A	P0C7U9	286 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	CNGA1	P29973	690 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	ERVK-24	P63145	666 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	CYP27C1	Q4G0S4	372 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	TAF7L	Q5H9L4	462 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	LLGL2	Q6P1M3	1020 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	FAM178B	Q8IXR5	827 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	ISL2	Q96A47	359 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	SSU72	Q9NP77	194 aa	Known RBP	6.6	□□□□□ -1.35
SS18-223	ENST00000583595	BSDC1	Q9NW68	430 aa	Predicted RBP	6.6	□□□□□ -1.35
SS18-223	ENST00000583595	CACNA2D2	Q9NY47	1150 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	ZC3H7B	Q9UGR2	993 aa	Known RBP	6.6	□□□□□ -1.35
SS18-223	ENST00000583595	CYP8B1	Q9UNU6	501 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	ATP8A1	Q9Y2Q0	1164 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	6.6	□□□□□ -1.35
SS18-223	ENST00000583595	CSAD	Q9Y600	493 aa		6.6	□□□□□ -1.35
SS18-223	ENST00000583595	CBX2	Q14781	532 aa	Predicted RBP	6.59	□□□□□ -1.35
SS18-223	ENST00000583595	LRRC14	Q15048	493 aa		6.59	□□□□□ -1.35
SS18-223	ENST00000583595	BRDT	Q58F21	947 aa	Predicted RBP	6.59	□□□□□ -1.35
SS18-223	ENST00000583595	MRM1	Q6IN84	353 aa	Known RBP	6.59	□□□□□ -1.35
SS18-223	ENST00000583595	TTC6	Q86TZ1	520 aa		6.59	□□□□□ -1.35
SS18-223	ENST00000583595	VSIG10L	Q86VR7	867 aa		6.59	□□□□□ -1.35
SS18-223	ENST00000583595	EXOC8	Q8IYI6	725 aa		6.59	□□□□□ -1.35
SS18-223	ENST00000583595	FAM9A	Q8IZU1	332 aa	Predicted RBP	6.59	□□□□□ -1.35
SS18-223	ENST00000583595	UBR7	Q8N806	425 aa		6.59	□□□□□ -1.35
SS18-223	ENST00000583595	RNF214	Q8ND24	703 aa		6.59	□□□□□ -1.35
SS18-223	ENST00000583595	SGSM3	Q96HU1	749 aa		6.59	□□□□□ -1.35
SS18-223	ENST00000583595	EHMT1	Q9H9B1	1298 aa		6.59	□□□□□ -1.35
SS18-223	ENST00000583595	EID1	Q9Y6B2	187 aa		6.59	□□□□□ -1.35
SS18-223	ENST00000583595	COL17A1	Q9UMD9	1497 aa	Predicted RBP	6.59	□□□□□ -1.36
SS18-223	ENST00000583595	DCDC2C	A8MYV0	355 aa		6.58	□□□□□ -1.36
SS18-223	ENST00000583595	IMPDH2	P12268	514 aa		6.58	□□□□□ -1.36
SS18-223	ENST00000583595	MYCLP1	P12525	358 aa	Predicted RBP	6.58	□□□□□ -1.36
SS18-223	ENST00000583595	CDK8	P49336	464 aa		6.58	□□□□□ -1.36
SS18-223	ENST00000583595	PPM1J	Q5JR12	505 aa		6.58	□□□□□ -1.36
SS18-223	ENST00000583595	DDX42	Q86XP3	938 aa	Known RBP eCLIP	6.58	□□□□□ -1.36
SS18-223	ENST00000583595	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	6.58	□□□□□ -1.36
SS18-223	ENST00000583595	ABI1	Q8IZP0	508 aa		6.58	□□□□□ -1.36
SS18-223	ENST00000583595	PMM1	Q92871	262 aa		6.58	□□□□□ -1.36
SS18-223	ENST00000583595	TSR2	Q969E8	191 aa	Known RBP	6.58	□□□□□ -1.36
SS18-223	ENST00000583595	FBXL18	Q96ME1	805 aa		6.58	□□□□□ -1.36
SS18-223	ENST00000583595	CEP89	Q96ST8	783 aa		6.58	□□□□□ -1.36
SS18-223	ENST00000583595	KCNQ2	O43526	872 aa		6.57	□□□□□ -1.36
SS18-223	ENST00000583595	LEFTY1	O75610	366 aa		6.57	□□□□□ -1.36

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