RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 CFPP27918 469 aa7.44□□□□□ -1.22
SMCHD1-208ENST00000583344 FBLN7Q53RD9 439 aa7.44□□□□□ -1.22
SMCHD1-208ENST00000583344 RNF32Q9H0A6 362 aa7.44□□□□□ -1.22
SMCHD1-208ENST00000583344 EPB41L4BQ9H329 900 aa7.44□□□□□ -1.22
SMCHD1-208ENST00000583344 C19orf44Q9H6X5 657 aa7.44□□□□□ -1.22
SMCHD1-208ENST00000583344 SP110Q9HB58 689 aa7.44□□□□□ -1.22
SMCHD1-208ENST00000583344 REC114Q7Z4M0 266 aa7.43□□□□□ -1.22
SMCHD1-208ENST00000583344 C1QL4Q86Z23 238 aa7.43□□□□□ -1.22
SMCHD1-208ENST00000583344 PHACTR4Q8IZ21 702 aa7.43□□□□□ -1.22
SMCHD1-208ENST00000583344 CCDC74BQ96LY2 380 aa7.43□□□□□ -1.22
SMCHD1-208ENST00000583344 TOX2Q96NM4 488 aa7.43□□□□□ -1.22
SMCHD1-208ENST00000583344 KIF2CQ99661 725 aa7.43□□□□□ -1.22
SMCHD1-208ENST00000583344 KRTAP4-7Q9BYR0 210 aa7.43□□□□□ -1.22
SMCHD1-208ENST00000583344 DCP1AQ9NPI6 582 aaPredicted RBP7.43□□□□□ -1.22
SMCHD1-208ENST00000583344 COPRSQ9NQ92 184 aa7.43□□□□□ -1.22
SMCHD1-208ENST00000583344 KBTBD4Q9NVX7 518 aa7.43□□□□□ -1.22
SMCHD1-208ENST00000583344 PWP1Q13610 501 aa7.42□□□□□ -1.22
SMCHD1-208ENST00000583344 MPP2Q14168 576 aa7.42□□□□□ -1.22
SMCHD1-208ENST00000583344 TIGD5Q53EQ6 642 aa7.42□□□□□ -1.22
SMCHD1-208ENST00000583344 LRRC56Q8IYG6 542 aaPredicted RBP7.42□□□□□ -1.22
SMCHD1-208ENST00000583344 ASPNQ9BXN1 380 aa7.42□□□□□ -1.22
SMCHD1-208ENST00000583344 NFIBO00712 420 aa7.41□□□□□ -1.22
SMCHD1-208ENST00000583344 FAM196AQ6ZSG2 479 aa7.41□□□□□ -1.22
SMCHD1-208ENST00000583344 LCNL1Q6ZST4 164 aa7.41□□□□□ -1.22
SMCHD1-208ENST00000583344 ANKLE2Q86XL3 938 aa7.41□□□□□ -1.22
SMCHD1-208ENST00000583344 PDZD8Q8NEN9 1154 aa7.41□□□□□ -1.22
SMCHD1-208ENST00000583344 CCDC27Q2M243 656 aa7.4□□□□□ -1.22
SMCHD1-208ENST00000583344 ERMP1Q7Z2K6 904 aa7.4□□□□□ -1.22
SMCHD1-208ENST00000583344 EBF1Q9UH73 591 aa7.4□□□□□ -1.22
SMCHD1-208ENST00000583344 RBM47A0AV96 593 aaKnown RBP7.39□□□□□ -1.23
SMCHD1-208ENST00000583344 NPIPB6E9PJ23 425 aa7.39□□□□□ -1.23
SMCHD1-208ENST00000583344 TEKQ02763 1124 aa7.39□□□□□ -1.23
SMCHD1-208ENST00000583344 ARSHQ5FYA8 562 aa7.39□□□□□ -1.23
SMCHD1-208ENST00000583344 FBXL19Q6PCT2 694 aa7.39□□□□□ -1.23
SMCHD1-208ENST00000583344 GZF1Q9H116 711 aaPredicted RBP7.39□□□□□ -1.23
SMCHD1-208ENST00000583344 BRMS1Q9HCU9 246 aa7.39□□□□□ -1.23
SMCHD1-208ENST00000583344 ETV2O00321 342 aaPredicted RBP7.38□□□□□ -1.23
SMCHD1-208ENST00000583344 TMEM253P0C7T8 217 aa7.38□□□□□ -1.23
SMCHD1-208ENST00000583344 GBP1P32455 592 aa7.38□□□□□ -1.23
SMCHD1-208ENST00000583344 CLEC16AQ2KHT3 1053 aa7.38□□□□□ -1.23
SMCHD1-208ENST00000583344 ATG14Q6ZNE5 492 aa7.38□□□□□ -1.23
SMCHD1-208ENST00000583344 OXR1Q8N573 874 aa7.38□□□□□ -1.23
SMCHD1-208ENST00000583344 ZSCAN18Q8TBC5 510 aaPredicted RBP7.38□□□□□ -1.23
SMCHD1-208ENST00000583344 VWCEQ96DN2 955 aa7.38□□□□□ -1.23
SMCHD1-208ENST00000583344 PCDHB14Q9Y5E9 798 aa7.38□□□□□ -1.23
SMCHD1-208ENST00000583344 FITM1A5D6W6 292 aa7.37□□□□□ -1.23
SMCHD1-208ENST00000583344 SLC22A31A6NKX4 558 aa7.37□□□□□ -1.23
SMCHD1-208ENST00000583344 UBOX5O94941 541 aa7.37□□□□□ -1.23
SMCHD1-208ENST00000583344 POLR2BP30876 1174 aaKnown RBP7.37□□□□□ -1.23
SMCHD1-208ENST00000583344 CRKP46108 304 aa7.37□□□□□ -1.23
SMCHD1-208ENST00000583344 GALK1P51570 392 aa7.37□□□□□ -1.23
SMCHD1-208ENST00000583344 CHMP4BP1P59074 171 aa7.37□□□□□ -1.23
SMCHD1-208ENST00000583344 CWF19L2Q2TBE0 894 aaKnown RBP7.37□□□□□ -1.23
SMCHD1-208ENST00000583344 KRTAP19-4Q3LI73 84 aa7.37□□□□□ -1.23
SMCHD1-208ENST00000583344 DHX38Q92620 1227 aaKnown RBP7.37□□□□□ -1.23
SMCHD1-208ENST00000583344 CD320Q9NPF0 282 aa7.37□□□□□ -1.23
SMCHD1-208ENST00000583344 RGS13O14921 159 aa7.36□□□□□ -1.23
SMCHD1-208ENST00000583344 ZSCAN22P10073 491 aaPredicted RBP7.36□□□□□ -1.23
SMCHD1-208ENST00000583344 RAG1P15918 1043 aa7.36□□□□□ -1.23
SMCHD1-208ENST00000583344 ERCC3P19447 782 aa7.36□□□□□ -1.23
SMCHD1-208ENST00000583344 EIF4A3P38919 411 aaKnown RBP7.36□□□□□ -1.23
SMCHD1-208ENST00000583344 NMIQ13287 307 aaPredicted RBP7.36□□□□□ -1.23
SMCHD1-208ENST00000583344 OVOS1Q6IE37 1185 aa7.36□□□□□ -1.23
SMCHD1-208ENST00000583344 LILRA2Q8N149 483 aa7.36□□□□□ -1.23
SMCHD1-208ENST00000583344 SYTL4Q96C24 671 aaPredicted RBP7.36□□□□□ -1.23
SMCHD1-208ENST00000583344 LRRC3Q9BY71 257 aa7.36□□□□□ -1.23
SMCHD1-208ENST00000583344 KCNQ5Q9NR82 932 aa7.36□□□□□ -1.23
SMCHD1-208ENST00000583344 GPR160Q9UJ42 338 aa7.36□□□□□ -1.23
SMCHD1-208ENST00000583344 SUPT16HQ9Y5B9 1047 aaKnown RBP7.36□□□□□ -1.23
SMCHD1-208ENST00000583344 TCAF2A6NFQ2 919 aa7.35□□□□□ -1.23
SMCHD1-208ENST00000583344 GREM1O60565 184 aa7.35□□□□□ -1.23
SMCHD1-208ENST00000583344 MED14OSP0DP75 135 aa7.35□□□□□ -1.23
SMCHD1-208ENST00000583344 SNW1Q13573 536 aaKnown RBP7.35□□□□□ -1.23
SMCHD1-208ENST00000583344 NR0B2Q15466 257 aa7.35□□□□□ -1.23
SMCHD1-208ENST00000583344 TMC3Q7Z5M5 1100 aa7.35□□□□□ -1.23
SMCHD1-208ENST00000583344 SLC26A8Q96RN1 970 aa7.35□□□□□ -1.23
SMCHD1-208ENST00000583344 G6PC3Q9BUM1 346 aa7.35□□□□□ -1.23
SMCHD1-208ENST00000583344 HDAC8Q9BY41 377 aa7.35□□□□□ -1.23
SMCHD1-208ENST00000583344 SLC6A17Q9H1V8 727 aa7.35□□□□□ -1.23
SMCHD1-208ENST00000583344 PSPNO60542 156 aa7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 GLDCP23378 1020 aa7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 MLECQ14165 292 aa7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 KCNA10Q16322 511 aa7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 ZNF605Q86T29 641 aa7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 ZNF296Q8WUU4 475 aaPredicted RBP7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 KCNN1Q92952 543 aa7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 INTS4Q96HW7 963 aaKnown RBP7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 BCL2L13Q9BXK5 485 aa7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 FOXP3Q9BZS1 431 aa7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 ASCC2Q9H1I8 757 aaPredicted RBP7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 GMIPQ9P107 970 aa7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 ADAMTS1Q9UHI8 967 aa7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 GGT7Q9UJ14 662 aa7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 SMG5Q9UPR3 1016 aaKnown RBP7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 YBX2Q9Y2T7 364 aaKnown RBP7.34□□□□□ -1.23
SMCHD1-208ENST00000583344 USP2O75604 605 aaPredicted RBP7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 EFEMP2O95967 443 aa7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 RPL10P27635 214 aaKnown RBP7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 ITGAEP38570 1179 aa7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 RNF4P78317 190 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms