RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 DIS3LQ8TF46 1054 aaKnown RBP24.62■■□□□ 1.53
SHMT1-209ENST00000582653 GPATCH3Q96I76 525 aa24.62■■□□□ 1.53
SHMT1-209ENST00000582653 SLC15A5A6NIM6 579 aa24.61■■□□□ 1.53
SHMT1-209ENST00000582653 SPDYE16A6NNV3 312 aaPredicted RBP24.61■■□□□ 1.53
SHMT1-209ENST00000582653 AKR1B1P15121 316 aa24.61■■□□□ 1.53
SHMT1-209ENST00000582653 CCL14Q16627 93 aa24.61■■□□□ 1.53
SHMT1-209ENST00000582653 CLEC10AQ8IUN9 316 aa24.61■■□□□ 1.53
SHMT1-209ENST00000582653 SIAH1Q8IUQ4 282 aa24.61■■□□□ 1.53
SHMT1-209ENST00000582653 KBTBD3Q8NAB2 608 aa24.61■■□□□ 1.53
SHMT1-209ENST00000582653 CCDC17Q96LX7 622 aa24.61■■□□□ 1.53
SHMT1-209ENST00000582653 APBA2Q99767 749 aa24.61■■□□□ 1.53
SHMT1-209ENST00000582653 BAZ2AQ9UIF9 1905 aaKnown RBP24.61■■□□□ 1.53
SHMT1-209ENST00000582653 CDK8P49336 464 aa24.6■■□□□ 1.53
SHMT1-209ENST00000582653 CTR9Q6PD62 1173 aa24.6■■□□□ 1.53
SHMT1-209ENST00000582653 AMOTL1Q8IY63 956 aa24.6■■□□□ 1.53
SHMT1-209ENST00000582653 OTUD7AQ8TE49 926 aaPredicted RBP24.6■■□□□ 1.53
SHMT1-209ENST00000582653 CRBNQ96SW2 442 aa24.6■■□□□ 1.53
SHMT1-209ENST00000582653 MYH7P12883 1935 aa24.6■■□□□ 1.53
SHMT1-209ENST00000582653 CEP290O15078 2479 aa24.6■■□□□ 1.53
SHMT1-209ENST00000582653 OSBP2Q969R2 916 aa24.59■■□□□ 1.53
SHMT1-209ENST00000582653 DDRGK1Q96HY6 314 aa24.59■■□□□ 1.53
SHMT1-209ENST00000582653 STRBPQ96SI9 672 aaKnown RBP24.59■■□□□ 1.53
SHMT1-209ENST00000582653 TMX2Q9Y320 296 aa24.59■■□□□ 1.53
SHMT1-209ENST00000582653 HOXC6P09630 235 aa24.58■■□□□ 1.53
SHMT1-209ENST00000582653 KIAA1755Q5JYT7 1200 aa24.58■■□□□ 1.53
SHMT1-209ENST00000582653 WDR78Q5VTH9 848 aa24.58■■□□□ 1.53
SHMT1-209ENST00000582653 LHX8Q68G74 356 aa24.58■■□□□ 1.53
SHMT1-209ENST00000582653 LPAR1Q92633 364 aa24.58■■□□□ 1.53
SHMT1-209ENST00000582653 C11orf49Q9H6J7 331 aa24.58■■□□□ 1.53
SHMT1-209ENST00000582653 ARHGEF10LQ9HCE6 1279 aa24.58■■□□□ 1.53
SHMT1-209ENST00000582653 IVNS1ABPQ9Y6Y0 642 aa24.58■■□□□ 1.53
SHMT1-209ENST00000582653 CCND3P30281 292 aaPredicted RBP24.57■■□□□ 1.52
SHMT1-209ENST00000582653 GRB14Q14449 540 aa24.57■■□□□ 1.52
SHMT1-209ENST00000582653 C16orf86Q6ZW13 317 aa24.57■■□□□ 1.52
SHMT1-209ENST00000582653 RNF113AO15541 343 aaKnown RBP24.56■■□□□ 1.52
SHMT1-209ENST00000582653 STRNO43815 780 aa24.56■■□□□ 1.52
SHMT1-209ENST00000582653 DSG3P32926 999 aa24.56■■□□□ 1.52
SHMT1-209ENST00000582653 APPBP2Q92624 585 aa24.56■■□□□ 1.52
SHMT1-209ENST00000582653 TANGO6Q9C0B7 1094 aa24.56■■□□□ 1.52
SHMT1-209ENST00000582653 SH2D4AQ9H788 454 aa24.56■■□□□ 1.52
SHMT1-209ENST00000582653 FLRT1Q9NZU1 646 aa24.56■■□□□ 1.52
SHMT1-209ENST00000582653 GSG1L2A8MUP6 293 aa24.55■■□□□ 1.52
SHMT1-209ENST00000582653 ICA1Q05084 483 aa24.55■■□□□ 1.52
SHMT1-209ENST00000582653 MFSD14CQ5VZR4 134 aa24.55■■□□□ 1.52
SHMT1-209ENST00000582653 STK11IPQ8N1F8 1099 aa24.55■■□□□ 1.52
SHMT1-209ENST00000582653 MB21D1Q8N884 522 aa24.55■■□□□ 1.52
SHMT1-209ENST00000582653 PI4K2BQ8TCG2 481 aa24.55■■□□□ 1.52
SHMT1-209ENST00000582653 MOV10L1Q9BXT6 1211 aaKnown RBP24.55■■□□□ 1.52
SHMT1-209ENST00000582653 VCPKMTQ9H867 229 aa24.55■■□□□ 1.52
SHMT1-209ENST00000582653 A0A1W2PPC1 479 aa24.54■■□□□ 1.52
SHMT1-209ENST00000582653 ATP2B2Q01814 1243 aa24.54■■□□□ 1.52
SHMT1-209ENST00000582653 SPICE1Q8N0Z3 855 aa24.54■■□□□ 1.52
SHMT1-209ENST00000582653 SHCBP1Q8NEM2 672 aa24.54■■□□□ 1.52
SHMT1-209ENST00000582653 SPATC1LQ9H0A9 340 aa24.54■■□□□ 1.52
SHMT1-209ENST00000582653 KANSL2Q9H9L4 492 aa24.54■■□□□ 1.52
SHMT1-209ENST00000582653 TTC41PQ6P2S7 1318 aa24.54■■□□□ 1.52
SHMT1-209ENST00000582653 RANBP2P49792 3224 aaKnown RBP24.54■■□□□ 1.52
SHMT1-209ENST00000582653 M0R2C6 588 aa24.53■■□□□ 1.52
SHMT1-209ENST00000582653 NPLOC4Q8TAT6 608 aa24.53■■□□□ 1.52
SHMT1-209ENST00000582653 ARPP21Q9UBL0 812 aaPredicted RBP24.53■■□□□ 1.52
SHMT1-209ENST00000582653 STAP2Q9UGK3 403 aa24.53■■□□□ 1.52
SHMT1-209ENST00000582653 GPAA1O43292 621 aa24.52■■□□□ 1.52
SHMT1-209ENST00000582653 FLOT1O75955 427 aa24.52■■□□□ 1.52
SHMT1-209ENST00000582653 IGHA2P01877 340 aa24.52■■□□□ 1.52
SHMT1-209ENST00000582653 ZFYP08048 801 aaPredicted RBP24.52■■□□□ 1.52
SHMT1-209ENST00000582653 COL6A1P12109 1028 aa24.52■■□□□ 1.52
SHMT1-209ENST00000582653 EEF2P13639 858 aaKnown RBP24.52■■□□□ 1.52
SHMT1-209ENST00000582653 SBK1Q52WX2 424 aa24.52■■□□□ 1.52
SHMT1-209ENST00000582653 GIMAP6Q6P9H5 292 aa24.52■■□□□ 1.52
SHMT1-209ENST00000582653 DPP9Q86TI2 863 aa24.52■■□□□ 1.52
SHMT1-209ENST00000582653 SEC62Q99442 399 aaKnown RBP24.52■■□□□ 1.52
SHMT1-209ENST00000582653 MYH8P13535 1937 aa24.51■■□□□ 1.51
SHMT1-209ENST00000582653 MINDY4BA8MYZ0 360 aa24.51■■□□□ 1.51
SHMT1-209ENST00000582653 ERC2O15083 957 aa24.51■■□□□ 1.51
SHMT1-209ENST00000582653 WDR46O15213 610 aaKnown RBP24.51■■□□□ 1.51
SHMT1-209ENST00000582653 ERCC3P19447 782 aa24.51■■□□□ 1.51
SHMT1-209ENST00000582653 ANKRD45Q5TZF3 282 aa24.51■■□□□ 1.51
SHMT1-209ENST00000582653 C7orf61Q8IZ16 206 aa24.51■■□□□ 1.51
SHMT1-209ENST00000582653 MROH8Q9H579 483 aa24.51■■□□□ 1.51
SHMT1-209ENST00000582653 EPB41L4AQ9HCS5 686 aaPredicted RBP24.51■■□□□ 1.51
SHMT1-209ENST00000582653 SZT2Q5T011 3432 aa24.51■■□□□ 1.51
SHMT1-209ENST00000582653 MX1P20591 662 aa24.5■■□□□ 1.51
SHMT1-209ENST00000582653 BMP8BP34820 402 aa24.5■■□□□ 1.51
SHMT1-209ENST00000582653 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.5■■□□□ 1.51
SHMT1-209ENST00000582653 ADAMTS5Q9UNA0 930 aa24.5■■□□□ 1.51
SHMT1-209ENST00000582653 PFASO15067 1338 aa24.5■■□□□ 1.51
SHMT1-209ENST00000582653 MSCO60682 206 aa24.49■■□□□ 1.51
SHMT1-209ENST00000582653 APPP05067 770 aa24.49■■□□□ 1.51
SHMT1-209ENST00000582653 ADORA2AP29274 412 aa24.49■■□□□ 1.51
SHMT1-209ENST00000582653 CYP2C19P33261 490 aa24.49■■□□□ 1.51
SHMT1-209ENST00000582653 SAMD1Q6SPF0 538 aaPredicted RBP24.49■■□□□ 1.51
SHMT1-209ENST00000582653 ATG4CQ96DT6 458 aa24.49■■□□□ 1.51
SHMT1-209ENST00000582653 GDF15Q99988 308 aa24.49■■□□□ 1.51
SHMT1-209ENST00000582653 FSD1Q9BTV5 496 aa24.49■■□□□ 1.51
SHMT1-209ENST00000582653 TRIOBPQ9H2D6 2365 aa24.49■■□□□ 1.51
SHMT1-209ENST00000582653 RASA1P20936 1047 aa24.48■■□□□ 1.51
SHMT1-209ENST00000582653 RLFQ13129 1914 aa24.48■■□□□ 1.51
SHMT1-209ENST00000582653 PLS1Q14651 629 aa24.48■■□□□ 1.51
SHMT1-209ENST00000582653 OLFML2BQ68BL8 750 aa24.48■■□□□ 1.51
SHMT1-209ENST00000582653 ABRAQ8N0Z2 381 aa24.48■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms