RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 CAPN2P17655 700 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 PIP4K2BP78356 416 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 WHAMMP3Q1A5X7 153 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 CTAGE6Q86UF2 777 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 CTAGE4Q8IX94 777 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 GOLGA5Q8TBA6 731 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 NUP88Q99567 741 aaPredicted RBP13.82□□□□□ -0.2
SHMT1-208ENST00000582352 GBP3Q9H0R5 595 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 ABHD10Q9NUJ1 306 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 VPS18Q9P253 973 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 MYH2Q9UKX2 1941 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 RHOXF2BP0C7M4 288 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 FECHP22830 423 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 TRIM14Q14142 442 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 CYP26C1Q6V0L0 522 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 PIGBQ92521 554 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 RHOXF2Q9BQY4 288 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 PHF20Q9BVI0 1012 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 LRP2BPQ9P2M1 347 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 MYO1AQ9UBC5 1043 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 PLCH1Q4KWH8 1693 aa13.81□□□□□ -0.2
SHMT1-208ENST00000582352 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.81□□□□□ -0.2
SHMT1-208ENST00000582352 MINDY4BA8MYZ0 360 aa13.81□□□□□ -0.2
SHMT1-208ENST00000582352 SPAG1Q07617 926 aa13.81□□□□□ -0.2
SHMT1-208ENST00000582352 SLC20A2Q08357 652 aa13.81□□□□□ -0.2
SHMT1-208ENST00000582352 KRT31Q15323 416 aa13.81□□□□□ -0.2
SHMT1-208ENST00000582352 EARS2Q5JPH6 523 aaKnown RBP13.81□□□□□ -0.2
SHMT1-208ENST00000582352 SNAP23O00161 211 aa13.81□□□□□ -0.2
SHMT1-208ENST00000582352 PRDM1O75626 825 aa13.81□□□□□ -0.2
SHMT1-208ENST00000582352 TRHP20396 242 aaPredicted RBP13.81□□□□□ -0.2
SHMT1-208ENST00000582352 LEKR1Q6ZMV7 388 aa13.81□□□□□ -0.2
SHMT1-208ENST00000582352 ABCB6Q9NP58 842 aa13.81□□□□□ -0.2
SHMT1-208ENST00000582352 BCL9LQ86UU0 1499 aa13.81□□□□□ -0.2
SHMT1-208ENST00000582352 NUP98P52948 1817 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 hCG_1642624A0A1W2PR95 340 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 GTF2E1P29083 439 aaPredicted RBP13.8□□□□□ -0.2
SHMT1-208ENST00000582352 ERVK-24P63145 666 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 ZNF174Q15697 407 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 HSP90B2PQ58FF3 399 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 TTC38Q5R3I4 469 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 RRAGBQ5VZM2 374 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 CATIPQ7Z7H3 387 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 IQUBQ8NA54 791 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 STAMQ92783 540 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 SHISA4Q96DD7 197 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 LIMA1Q9UHB6 759 aaKnown RBP13.8□□□□□ -0.2
SHMT1-208ENST00000582352 TUBBP07437 444 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 PAK1Q13153 545 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 SEC23AQ15436 765 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 PKN1Q16512 942 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 MSL3Q8N5Y2 521 aaKnown RBP13.8□□□□□ -0.2
SHMT1-208ENST00000582352 VPS16Q9H269 839 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 L1RE1Q9UN81 338 aa13.8□□□□□ -0.2
SHMT1-208ENST00000582352 PRPF3O43395 683 aaKnown RBP13.79□□□□□ -0.2
SHMT1-208ENST00000582352 COBLO75128 1261 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 TFRCP02786 760 aaKnown RBP13.79□□□□□ -0.2
SHMT1-208ENST00000582352 EVA1CP58658 441 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 VSNL1P62760 191 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 IFIT1BQ5T764 474 aaKnown RBP13.79□□□□□ -0.2
SHMT1-208ENST00000582352 PYM1Q9BRP8 204 aaKnown RBP13.79□□□□□ -0.2
SHMT1-208ENST00000582352 BLZF1Q9H2G9 400 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 ACBD3Q9H3P7 528 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 TAB2Q9NYJ8 693 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 RWDD2AQ9UIY3 292 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 XDHP47989 1333 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 ACTN2P35609 894 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 BCAMP50895 628 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 COPB1P53618 953 aaKnown RBP13.79□□□□□ -0.2
SHMT1-208ENST00000582352 ENAHQ8N8S7 591 aaPredicted RBP13.79□□□□□ -0.2
SHMT1-208ENST00000582352 SDR42E1Q8WUS8 393 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 ZSCAN10Q96SZ4 725 aaPredicted RBP13.79□□□□□ -0.2
SHMT1-208ENST00000582352 SLF1Q9BQI6 1058 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 SUGCTQ9HAC7 445 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 RBM28Q9NW13 759 aaKnown RBP13.79□□□□□ -0.2
SHMT1-208ENST00000582352 ZBTB1Q9Y2K1 713 aa13.79□□□□□ -0.2
SHMT1-208ENST00000582352 V9GY48 417 aaPredicted RBP13.79□□□□□ -0.2
SHMT1-208ENST00000582352 WNT7AO00755 349 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 PLEKHA8P1O95397 391 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 CYP7A1P22680 504 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 ATP2C1P98194 919 aaPredicted RBP13.78□□□□□ -0.2
SHMT1-208ENST00000582352 PTGDRQ13258 359 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 CCDC102AQ96A19 550 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 FEZ2Q9UHY8 353 aaPredicted RBP13.78□□□□□ -0.2
SHMT1-208ENST00000582352 MYO6Q9UM54 1294 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 MYH13Q9UKX3 1938 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 STRCP1A6NGW2 1772 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 KCNJ18B7U540 433 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 CDC25AP30304 524 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 KRT9P35527 623 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 ARHGAP25P42331 645 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 KCNJ12Q14500 433 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 CASP8Q14790 479 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 TCP11X2Q5H9J9 407 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 WWC2Q6AWC2 1192 aa13.78□□□□□ -0.2
SHMT1-208ENST00000582352 DZIP3Q86Y13 1208 aaKnown RBP13.78□□□□□ -0.2
SHMT1-208ENST00000582352 ABL1P00519 1130 aa13.77□□□□□ -0.2
SHMT1-208ENST00000582352 CYP19A1P11511 503 aaPredicted RBP13.77□□□□□ -0.2
SHMT1-208ENST00000582352 IQCA1Q86XH1 822 aa13.77□□□□□ -0.2
SHMT1-208ENST00000582352 NELFBQ8WX92 580 aa13.77□□□□□ -0.2
SHMT1-208ENST00000582352 RMND1Q9NWS8 449 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms