RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 INTS3Q68E01 1043 aaKnown RBP10.3□□□□□ -0.76
SS18-214ENST00000580003 THAP5Q7Z6K1 395 aa10.3□□□□□ -0.76
SS18-214ENST00000580003 KRTAP4-6Q9BYQ5 205 aa10.3□□□□□ -0.76
SS18-214ENST00000580003 IGSF5Q9NSI5 407 aa10.3□□□□□ -0.76
SS18-214ENST00000580003 ZSWIM5Q9P217 1185 aa10.3□□□□□ -0.76
SS18-214ENST00000580003 CD96P40200 585 aa10.29□□□□□ -0.76
SS18-214ENST00000580003 NFXL1Q6ZNB6 911 aa10.29□□□□□ -0.76
SS18-214ENST00000580003 DTWD2Q8NBA8 298 aa10.29□□□□□ -0.76
SS18-214ENST00000580003 SLC9A7Q96T83 725 aa10.29□□□□□ -0.76
SS18-214ENST00000580003 TRIT1Q9H3H1 467 aaKnown RBP10.29□□□□□ -0.76
SS18-214ENST00000580003 SEMA3GQ9NS98 782 aa10.29□□□□□ -0.76
SS18-214ENST00000580003 STRIP2Q9ULQ0 834 aa10.29□□□□□ -0.76
SS18-214ENST00000580003 OAS3Q9Y6K5 1087 aaKnown RBP10.29□□□□□ -0.76
SS18-214ENST00000580003 COL17A1Q9UMD9 1497 aaPredicted RBP10.29□□□□□ -0.76
SS18-214ENST00000580003 LRRN2O75325 713 aa10.28□□□□□ -0.76
SS18-214ENST00000580003 PLCL1Q15111 1095 aa10.28□□□□□ -0.76
SS18-214ENST00000580003 LSRQ86X29 649 aaPredicted RBP10.28□□□□□ -0.76
SS18-214ENST00000580003 TAB3Q8N5C8 712 aaPredicted RBP10.28□□□□□ -0.76
SS18-214ENST00000580003 OR6P1Q8NGX9 317 aa10.28□□□□□ -0.76
SS18-214ENST00000580003 UBE2FQ969M7 185 aa10.28□□□□□ -0.76
SS18-214ENST00000580003 DHRS1Q96LJ7 313 aa10.28□□□□□ -0.76
SS18-214ENST00000580003 GPATCH2Q9NW75 528 aa10.28□□□□□ -0.76
SS18-214ENST00000580003 FAM86C2PA6NEL3 165 aa10.27□□□□□ -0.77
SS18-214ENST00000580003 ATF4P18848 351 aaPredicted RBP10.27□□□□□ -0.77
SS18-214ENST00000580003 GUCY2CP25092 1073 aa10.27□□□□□ -0.77
SS18-214ENST00000580003 XP32Q5T750 250 aa10.27□□□□□ -0.77
SS18-214ENST00000580003 SLC6A18Q96N87 628 aa10.27□□□□□ -0.77
SS18-214ENST00000580003 ASCC2Q9H1I8 757 aaPredicted RBP10.27□□□□□ -0.77
SS18-214ENST00000580003 ATP13A1Q9HD20 1204 aa10.27□□□□□ -0.77
SS18-214ENST00000580003 RBAK-RBAKDNI3L0D1 243 aa10.26□□□□□ -0.77
SS18-214ENST00000580003 NBPF12Q5TAG4 269 aaPredicted RBP10.26□□□□□ -0.77
SS18-214ENST00000580003 RUFY4Q6ZNE9 571 aa10.26□□□□□ -0.77
SS18-214ENST00000580003 WFDC3Q8IUB2 231 aa10.26□□□□□ -0.77
SS18-214ENST00000580003 ABI1Q8IZP0 508 aa10.26□□□□□ -0.77
SS18-214ENST00000580003 VWCEQ96DN2 955 aa10.26□□□□□ -0.77
SS18-214ENST00000580003 ACRP10323 421 aa10.25□□□□□ -0.77
SS18-214ENST00000580003 FUT4P22083 530 aa10.25□□□□□ -0.77
SS18-214ENST00000580003 GIPRP48546 466 aa10.25□□□□□ -0.77
SS18-214ENST00000580003 TMEM192Q8IY95 271 aa10.25□□□□□ -0.77
SS18-214ENST00000580003 GPR62Q9BZJ7 368 aa10.25□□□□□ -0.77
SS18-214ENST00000580003 ZP2Q05996 745 aa10.24□□□□□ -0.77
SS18-214ENST00000580003 CLEC16AQ2KHT3 1053 aa10.24□□□□□ -0.77
SS18-214ENST00000580003 TMPRSS7Q7RTY8 843 aa10.24□□□□□ -0.77
SS18-214ENST00000580003 PI4K2BQ8TCG2 481 aa10.24□□□□□ -0.77
SS18-214ENST00000580003 ZNF512BQ96KM6 892 aaPredicted RBP10.24□□□□□ -0.77
SS18-214ENST00000580003 MKRN2Q9H000 416 aaKnown RBP10.24□□□□□ -0.77
SS18-214ENST00000580003 DUSP15Q9H1R2 295 aaPredicted RBP10.24□□□□□ -0.77
SS18-214ENST00000580003 LMCD1Q9NZU5 365 aa10.24□□□□□ -0.77
SS18-214ENST00000580003 TPP2P29144 1249 aaPredicted RBP10.23□□□□□ -0.77
SS18-214ENST00000580003 UNC5AQ6ZN44 842 aa10.23□□□□□ -0.77
SS18-214ENST00000580003 SHDQ96IW2 340 aa10.23□□□□□ -0.77
SS18-214ENST00000580003 TINF2Q9BSI4 451 aa10.23□□□□□ -0.77
SS18-214ENST00000580003 SUCOQ9UBS9 1254 aaKnown RBP10.23□□□□□ -0.77
SS18-214ENST00000580003 SLC12A7Q9Y666 1083 aa10.23□□□□□ -0.77
SS18-214ENST00000580003 SSBP05455 408 aaKnown RBP eCLIP10.22□□□□□ -0.77
SS18-214ENST00000580003 SRFP11831 508 aa10.22□□□□□ -0.77
SS18-214ENST00000580003 IRAK1P51617 712 aa10.22□□□□□ -0.77
SS18-214ENST00000580003 ARID5AQ03989 594 aa10.22□□□□□ -0.77
SS18-214ENST00000580003 NBPF9Q3BBW0 867 aa10.22□□□□□ -0.77
SS18-214ENST00000580003 CARS2Q9HA77 564 aaKnown RBP10.22□□□□□ -0.77
SS18-214ENST00000580003 PMS1P54277 932 aaKnown RBP10.21□□□□□ -0.77
SS18-214ENST00000580003 SLC23A3Q6PIS1 610 aa10.21□□□□□ -0.77
SS18-214ENST00000580003 TSPYL5Q86VY4 417 aaPredicted RBP10.21□□□□□ -0.77
SS18-214ENST00000580003 CREG2Q8IUH2 290 aa10.21□□□□□ -0.77
SS18-214ENST00000580003 ANAPC16Q96DE5 110 aa10.21□□□□□ -0.77
SS18-214ENST00000580003 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.21□□□□□ -0.77
SS18-214ENST00000580003 DUSP13Q9UII6 198 aa10.21□□□□□ -0.77
SS18-214ENST00000580003 NMIQ13287 307 aaPredicted RBP10.2□□□□□ -0.78
SS18-214ENST00000580003 ZYXQ15942 572 aaKnown RBP10.2□□□□□ -0.78
SS18-214ENST00000580003 PPP2R5EQ16537 467 aa10.2□□□□□ -0.78
SS18-214ENST00000580003 ZNF792Q3KQV3 632 aa10.2□□□□□ -0.78
SS18-214ENST00000580003 TTC6Q86TZ1 520 aa10.2□□□□□ -0.78
SS18-214ENST00000580003 CCDC144CPQ8IYA2 1237 aa10.2□□□□□ -0.78
SS18-214ENST00000580003 C19orf47Q8N9M1 422 aaKnown RBP10.2□□□□□ -0.78
SS18-214ENST00000580003 WASH4PA8MWX3 477 aa10.19□□□□□ -0.78
SS18-214ENST00000580003 DNAJA1P31689 397 aaKnown RBP10.19□□□□□ -0.78
SS18-214ENST00000580003 ZC3H6P61129 1189 aaKnown RBP10.19□□□□□ -0.78
SS18-214ENST00000580003 BBS9Q3SYG4 887 aa10.19□□□□□ -0.78
SS18-214ENST00000580003 SLC43A3Q8NBI5 491 aa10.19□□□□□ -0.78
SS18-214ENST00000580003 ENOX1Q8TC92 643 aaKnown RBP10.19□□□□□ -0.78
SS18-214ENST00000580003 SMARCC1Q92922 1105 aaPredicted RBP10.19□□□□□ -0.78
SS18-214ENST00000580003 ADGRE2Q9UHX3 823 aa10.19□□□□□ -0.78
SS18-214ENST00000580003 FBXL21Q9UKT6 434 aa10.19□□□□□ -0.78
SS18-214ENST00000580003 PCDHB12Q9Y5F1 795 aa10.19□□□□□ -0.78
SS18-214ENST00000580003 LTKP29376 864 aa10.18□□□□□ -0.78
SS18-214ENST00000580003 AUHQ13825 339 aaKnown RBP10.18□□□□□ -0.78
SS18-214ENST00000580003 RC3H2Q9HBD1 1191 aaKnown RBP10.18□□□□□ -0.78
SS18-214ENST00000580003 PRDM7Q9NQW5 492 aa10.18□□□□□ -0.78
SS18-214ENST00000580003 MBNL3Q9NUK0 354 aaKnown RBP10.18□□□□□ -0.78
SS18-214ENST00000580003 A0A1W2PQH9 124 aa10.17□□□□□ -0.78
SS18-214ENST00000580003 SHISA3A0PJX4 238 aa10.17□□□□□ -0.78
SS18-214ENST00000580003 ESR1P03372 595 aa10.17□□□□□ -0.78
SS18-214ENST00000580003 GAB4Q2WGN9 574 aa10.17□□□□□ -0.78
SS18-214ENST00000580003 TDRD10Q5VZ19 366 aaKnown RBP10.17□□□□□ -0.78
SS18-214ENST00000580003 PRDM14Q9GZV8 571 aa10.17□□□□□ -0.78
SS18-214ENST00000580003 PHAXQ9H814 394 aaKnown RBP10.17□□□□□ -0.78
SS18-214ENST00000580003 ZNF214Q9UL59 606 aaPredicted RBP10.17□□□□□ -0.78
SS18-214ENST00000580003 C9IYK1 514 aa10.16□□□□□ -0.78
SS18-214ENST00000580003 RNASE1P07998 156 aaKnown RBP10.16□□□□□ -0.78
SS18-214ENST00000580003 SNW1Q13573 536 aaKnown RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 113.9 ms