RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 COL25A1Q9BXS0 654 aaPredicted RBP12.05□□□□□ -0.48
SS18-210ENST00000578700 SENP6Q9GZR1 1112 aaPredicted RBP12.05□□□□□ -0.48
SS18-210ENST00000578700 HELLSQ9NRZ9 838 aa12.05□□□□□ -0.48
SS18-210ENST00000578700 AATFQ9NY61 560 aaKnown RBP eCLIP12.05□□□□□ -0.48
SS18-210ENST00000578700 HERC5Q9UII4 1024 aaKnown RBP12.05□□□□□ -0.48
SS18-210ENST00000578700 USP17L10C9JJH3 530 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 RNF113AO15541 343 aaKnown RBP12.04□□□□□ -0.48
SS18-210ENST00000578700 XRCC5P13010 732 aaKnown RBP12.04□□□□□ -0.48
SS18-210ENST00000578700 CNGA1P29973 690 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 MAPK4P31152 587 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 HSPA4P34932 840 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 RGS2P41220 211 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 ATN1P54259 1190 aaPredicted RBP12.04□□□□□ -0.48
SS18-210ENST00000578700 ERVK-9P63128 1117 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 ERVK-24P63145 666 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 ZYXQ15942 572 aaKnown RBP12.04□□□□□ -0.48
SS18-210ENST00000578700 MCMDC2Q4G0Z9 681 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 MAP3K21Q5TCX8 1036 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 GPR142Q7Z601 462 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 PLEKHH3Q7Z736 793 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 TRMT44Q8IYL2 757 aaKnown RBP12.04□□□□□ -0.48
SS18-210ENST00000578700 FAM227BQ96M60 508 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 LBHD1Q9BQE6 289 aaPredicted RBP12.04□□□□□ -0.48
SS18-210ENST00000578700 WDR18Q9BV38 432 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 LSG1Q9H089 658 aaKnown RBP12.04□□□□□ -0.48
SS18-210ENST00000578700 PORCNQ9H237 461 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 SNRKQ9NRH2 765 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 RBPJLQ9UBG7 517 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 SAP30BPQ9UHR5 308 aaKnown RBP12.04□□□□□ -0.48
SS18-210ENST00000578700 PDS5AQ29RF7 1337 aaKnown RBP12.04□□□□□ -0.48
SS18-210ENST00000578700 CCDC171Q6TFL3 1326 aa12.04□□□□□ -0.48
SS18-210ENST00000578700 SPTBN5Q9NRC6 3674 aaKnown RBP12.03□□□□□ -0.48
SS18-210ENST00000578700 FRMPD3Q5JV73 1810 aa12.03□□□□□ -0.48
SS18-210ENST00000578700 C19orf81C9J6K1 198 aa12.03□□□□□ -0.48
SS18-210ENST00000578700 K7ELQ4 463 aaPredicted RBP12.03□□□□□ -0.48
SS18-210ENST00000578700 BAG3O95817 575 aa12.03□□□□□ -0.48
SS18-210ENST00000578700 ASNSP08243 561 aa12.03□□□□□ -0.48
SS18-210ENST00000578700 KCNA4P22459 653 aa12.03□□□□□ -0.48
SS18-210ENST00000578700 HOXA7P31268 230 aaPredicted RBP12.03□□□□□ -0.48
SS18-210ENST00000578700 LHX8Q68G74 356 aa12.03□□□□□ -0.48
SS18-210ENST00000578700 NAA16Q6N069 864 aaPredicted RBP12.03□□□□□ -0.48
SS18-210ENST00000578700 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.03□□□□□ -0.48
SS18-210ENST00000578700 EDC3Q96F86 508 aaKnown RBP12.03□□□□□ -0.48
SS18-210ENST00000578700 KIF2CQ99661 725 aa12.03□□□□□ -0.48
SS18-210ENST00000578700 DHX36Q9H2U1 1008 aaKnown RBP12.03□□□□□ -0.48
SS18-210ENST00000578700 PALD1Q9ULE6 856 aa12.03□□□□□ -0.48
SS18-210ENST00000578700 COL2A1P02458 1487 aaPredicted RBP12.02□□□□□ -0.48
SS18-210ENST00000578700 CDK5RAP2Q96SN8 1893 aa12.02□□□□□ -0.48
SS18-210ENST00000578700 A0A0D9SFI3 127 aa12.02□□□□□ -0.49
SS18-210ENST00000578700 COL6A1P12109 1028 aa12.02□□□□□ -0.49
SS18-210ENST00000578700 PSMA5P28066 241 aa12.02□□□□□ -0.49
SS18-210ENST00000578700 ARID4AP29374 1257 aaPredicted RBP12.02□□□□□ -0.49
SS18-210ENST00000578700 MCAMP43121 646 aa12.02□□□□□ -0.49
SS18-210ENST00000578700 ZAP70P43403 619 aa12.02□□□□□ -0.49
SS18-210ENST00000578700 NEK4P51957 841 aa12.02□□□□□ -0.49
SS18-210ENST00000578700 FOXP4Q8IVH2 680 aaPredicted RBP12.02□□□□□ -0.49
SS18-210ENST00000578700 U3KPZ7 1027 aaPredicted RBP12.02□□□□□ -0.49
SS18-210ENST00000578700 MYCNP04198 464 aaPredicted RBP12.01□□□□□ -0.49
SS18-210ENST00000578700 ATP2B2Q01814 1243 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 MAP3K12Q12852 859 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 MAP2K5Q13163 448 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 KRT32Q14532 448 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 MORN1Q5T089 497 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 MFSD14CQ5VZR4 134 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 USP17L2Q6R6M4 530 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 USP6NLQ92738 828 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 GUCD1Q96NT3 240 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 FEZ1Q99689 392 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 APBA2Q99767 749 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 DNAJC18Q9H819 358 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 EMILIN3Q9NT22 766 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 PRKAG2Q9UGJ0 569 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 SIPA1L1O43166 1804 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 FOCADQ5VW36 1801 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 CDH23Q9H251 3354 aa12.01□□□□□ -0.49
SS18-210ENST00000578700 POTEB2H3BUK9 544 aa12□□□□□ -0.49
SS18-210ENST00000578700 GH2P01242 217 aa12□□□□□ -0.49
SS18-210ENST00000578700 HLA-DOAP06340 250 aa12□□□□□ -0.49
SS18-210ENST00000578700 PLCG2P16885 1265 aa12□□□□□ -0.49
SS18-210ENST00000578700 ZMYM1Q5SVZ6 1142 aa12□□□□□ -0.49
SS18-210ENST00000578700 MAP4K1Q92918 833 aa12□□□□□ -0.49
SS18-210ENST00000578700 IL17RAQ96F46 866 aa12□□□□□ -0.49
SS18-210ENST00000578700 FLRT1Q9NZU1 646 aa12□□□□□ -0.49
SS18-210ENST00000578700 ZBTB21Q9ULJ3 1066 aa12□□□□□ -0.49
SS18-210ENST00000578700 RBM8AQ9Y5S9 174 aaKnown RBP12□□□□□ -0.49
SS18-210ENST00000578700 IDH1O75874 414 aaKnown RBP11.99□□□□□ -0.49
SS18-210ENST00000578700 DYNLL1P63167 89 aaKnown RBP11.99□□□□□ -0.49
SS18-210ENST00000578700 RAB3GAP1Q15042 981 aa11.99□□□□□ -0.49
SS18-210ENST00000578700 ZNF697Q5TEC3 545 aa11.99□□□□□ -0.49
SS18-210ENST00000578700 ANO1Q5XXA6 986 aa11.99□□□□□ -0.49
SS18-210ENST00000578700 POTEEQ6S8J3 1075 aa11.99□□□□□ -0.49
SS18-210ENST00000578700 GTF3C2Q8WUA4 911 aaPredicted RBP11.99□□□□□ -0.49
SS18-210ENST00000578700 APPBP2Q92624 585 aa11.99□□□□□ -0.49
SS18-210ENST00000578700 IL25Q9H293 177 aa11.99□□□□□ -0.49
SS18-210ENST00000578700 SLKQ9H2G2 1235 aaPredicted RBP11.99□□□□□ -0.49
SS18-210ENST00000578700 PRDM5Q9NQX1 630 aaPredicted RBP11.99□□□□□ -0.49
SS18-210ENST00000578700 DDX20Q9UHI6 824 aaKnown RBP11.99□□□□□ -0.49
SS18-210ENST00000578700 CTNNA3Q9UI47 895 aa11.99□□□□□ -0.49
SS18-210ENST00000578700 ATP11BQ9Y2G3 1177 aa11.99□□□□□ -0.49
SS18-210ENST00000578700 SNX14Q9Y5W7 946 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms