RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 SLC26A6Q9BXS9 759 aa15.91■□□□□ 0.14
CCDC40-209ENST00000573474 ZNF341Q9BYN7 854 aa15.91■□□□□ 0.14
CCDC40-209ENST00000573474 PALM3A6NDB9 673 aaPredicted RBP15.9■□□□□ 0.14
CCDC40-209ENST00000573474 POTECB2RU33 542 aa15.9■□□□□ 0.14
CCDC40-209ENST00000573474 CTNND1O60716 968 aaKnown RBP15.9■□□□□ 0.14
CCDC40-209ENST00000573474 PPFIA3O75145 1194 aa15.9■□□□□ 0.14
CCDC40-209ENST00000573474 PARP1P09874 1014 aaKnown RBP15.9■□□□□ 0.14
CCDC40-209ENST00000573474 ZSCAN22P10073 491 aaPredicted RBP15.9■□□□□ 0.14
CCDC40-209ENST00000573474 FUT2Q10981 343 aa15.9■□□□□ 0.14
CCDC40-209ENST00000573474 SIAH1Q8IUQ4 282 aa15.9■□□□□ 0.14
CCDC40-209ENST00000573474 LRRC47Q8N1G4 583 aaKnown RBP15.9■□□□□ 0.14
CCDC40-209ENST00000573474 RGS22Q8NE09 1264 aa15.9■□□□□ 0.14
CCDC40-209ENST00000573474 TNPO1Q92973 898 aaKnown RBP15.9■□□□□ 0.14
CCDC40-209ENST00000573474 MAD2L2Q9UI95 211 aa15.9■□□□□ 0.14
CCDC40-209ENST00000573474 ZBTB21Q9ULJ3 1066 aa15.9■□□□□ 0.14
CCDC40-209ENST00000573474 SYNPO2Q9UMS6 1093 aa15.9■□□□□ 0.14
CCDC40-209ENST00000573474 MTMR6Q9Y217 621 aa15.9■□□□□ 0.14
CCDC40-209ENST00000573474 USP17L5A8MUK1 530 aa15.89■□□□□ 0.13
CCDC40-209ENST00000573474 H3BQV1 296 aa15.89■□□□□ 0.13
CCDC40-209ENST00000573474 PRPF3O43395 683 aaKnown RBP15.89■□□□□ 0.13
CCDC40-209ENST00000573474 PLEKHA8P1O95397 391 aa15.89■□□□□ 0.13
CCDC40-209ENST00000573474 ASNSP08243 561 aa15.89■□□□□ 0.13
CCDC40-209ENST00000573474 AKAP17AQ02040 695 aaKnown RBP15.89■□□□□ 0.13
CCDC40-209ENST00000573474 IFFO2Q5TF58 517 aa15.89■□□□□ 0.13
CCDC40-209ENST00000573474 PRAMEF18Q5VWM3 479 aa15.89■□□□□ 0.13
CCDC40-209ENST00000573474 CMTR1Q8N1G2 835 aaKnown RBP15.89■□□□□ 0.13
CCDC40-209ENST00000573474 CCDC82Q8N4S0 544 aa15.89■□□□□ 0.13
CCDC40-209ENST00000573474 SRBD1Q8N5C6 995 aaKnown RBP15.89■□□□□ 0.13
CCDC40-209ENST00000573474 RNF26Q9BY78 433 aaPredicted RBP15.89■□□□□ 0.13
CCDC40-209ENST00000573474 ARHGEF10LQ9HCE6 1279 aa15.89■□□□□ 0.13
CCDC40-209ENST00000573474 ZNF112Q9UJU3 913 aa15.89■□□□□ 0.13
CCDC40-209ENST00000573474 MTMR7Q9Y216 660 aa15.89■□□□□ 0.13
CCDC40-209ENST00000573474 UTRNP46939 3433 aa15.89■□□□□ 0.13
CCDC40-209ENST00000573474 SCN4AP35499 1836 aa15.89■□□□□ 0.13
CCDC40-209ENST00000573474 WDR90Q96KV7 1748 aa15.88■□□□□ 0.13
CCDC40-209ENST00000573474 VPS37CA5D8V6 355 aaPredicted RBP15.88■□□□□ 0.13
CCDC40-209ENST00000573474 DEXIO95424 95 aa15.88■□□□□ 0.13
CCDC40-209ENST00000573474 SNHG28P0DPA3 235 aa15.88■□□□□ 0.13
CCDC40-209ENST00000573474 PDHBP11177 359 aa15.88■□□□□ 0.13
CCDC40-209ENST00000573474 SMARCA1P28370 1054 aa15.88■□□□□ 0.13
CCDC40-209ENST00000573474 ASPRV1Q53RT3 343 aa15.88■□□□□ 0.13
CCDC40-209ENST00000573474 USP17L2Q6R6M4 530 aa15.88■□□□□ 0.13
CCDC40-209ENST00000573474 KRT26Q7Z3Y9 468 aa15.88■□□□□ 0.13
CCDC40-209ENST00000573474 STAG2Q8N3U4 1231 aa15.88■□□□□ 0.13
CCDC40-209ENST00000573474 C8orf76Q96K31 380 aa15.88■□□□□ 0.13
CCDC40-209ENST00000573474 ALG1Q9BT22 464 aa15.88■□□□□ 0.13
CCDC40-209ENST00000573474 RBM27Q9P2N5 1060 aaKnown RBP15.88■□□□□ 0.13
CCDC40-209ENST00000573474 ADM5C9JUS6 153 aa15.87■□□□□ 0.13
CCDC40-209ENST00000573474 KLRF2D3W0D1 207 aa15.87■□□□□ 0.13
CCDC40-209ENST00000573474 EAPPQ56P03 285 aaPredicted RBP15.87■□□□□ 0.13
CCDC40-209ENST00000573474 FOXD4L5Q5VV16 416 aaPredicted RBP15.87■□□□□ 0.13
CCDC40-209ENST00000573474 USP48Q86UV5 1035 aa15.87■□□□□ 0.13
CCDC40-209ENST00000573474 GMCL1P1Q8NEA9 526 aa15.87■□□□□ 0.13
CCDC40-209ENST00000573474 DCAF4Q8WV16 495 aa15.87■□□□□ 0.13
CCDC40-209ENST00000573474 FOXD4L4Q8WXT5 416 aaPredicted RBP15.87■□□□□ 0.13
CCDC40-209ENST00000573474 V9GY48 417 aaPredicted RBP15.87■□□□□ 0.13
CCDC40-209ENST00000573474 CNTNAP5Q8WYK1 1306 aa15.87■□□□□ 0.13
CCDC40-209ENST00000573474 F13A1P00488 732 aa15.86■□□□□ 0.13
CCDC40-209ENST00000573474 GOLGA8HP0CJ92 632 aa15.86■□□□□ 0.13
CCDC40-209ENST00000573474 ZNF543Q08ER8 600 aa15.86■□□□□ 0.13
CCDC40-209ENST00000573474 GPATCH4Q5T3I0 446 aaKnown RBP15.86■□□□□ 0.13
CCDC40-209ENST00000573474 SLFN13Q68D06 897 aa15.86■□□□□ 0.13
CCDC40-209ENST00000573474 CLEC17AQ6ZS10 378 aa15.86■□□□□ 0.13
CCDC40-209ENST00000573474 CDC37L1Q7L3B6 337 aa15.86■□□□□ 0.13
CCDC40-209ENST00000573474 FBXO18Q8NFZ0 1043 aa15.86■□□□□ 0.13
CCDC40-209ENST00000573474 SPZ1Q9BXG8 430 aa15.86■□□□□ 0.13
CCDC40-209ENST00000573474 SH2D4AQ9H788 454 aa15.86■□□□□ 0.13
CCDC40-209ENST00000573474 TMX2Q9Y320 296 aa15.86■□□□□ 0.13
CCDC40-209ENST00000573474 ATP6V1DQ9Y5K8 247 aa15.86■□□□□ 0.13
CCDC40-209ENST00000573474 A0A1W2PRG0 241 aa15.85■□□□□ 0.13
CCDC40-209ENST00000573474 F5H6K3 240 aa15.85■□□□□ 0.13
CCDC40-209ENST00000573474 VEGFAP15692 232 aaPredicted RBP15.85■□□□□ 0.13
CCDC40-209ENST00000573474 INPP5BP32019 993 aa15.85■□□□□ 0.13
CCDC40-209ENST00000573474 FOSBP53539 338 aa15.85■□□□□ 0.13
CCDC40-209ENST00000573474 KLRC3Q07444 240 aa15.85■□□□□ 0.13
CCDC40-209ENST00000573474 TRIM29Q14134 588 aa15.85■□□□□ 0.13
CCDC40-209ENST00000573474 SCYL3Q8IZE3 742 aa15.85■□□□□ 0.13
CCDC40-209ENST00000573474 ACER1Q8TDN7 264 aa15.85■□□□□ 0.13
CCDC40-209ENST00000573474 KLRG1Q96E93 195 aa15.85■□□□□ 0.13
CCDC40-209ENST00000573474 GMCL1Q96IK5 515 aa15.85■□□□□ 0.13
CCDC40-209ENST00000573474 GBP4Q96PP9 640 aa15.85■□□□□ 0.13
CCDC40-209ENST00000573474 WRNIP1Q96S55 665 aa15.85■□□□□ 0.13
CCDC40-209ENST00000573474 RAD21O60216 631 aa15.84■□□□□ 0.13
CCDC40-209ENST00000573474 USP2O75604 605 aaPredicted RBP15.84■□□□□ 0.13
CCDC40-209ENST00000573474 XBP1P17861 261 aa15.84■□□□□ 0.13
CCDC40-209ENST00000573474 NF2P35240 595 aa15.84■□□□□ 0.13
CCDC40-209ENST00000573474 SLC1A4P43007 532 aa15.84■□□□□ 0.13
CCDC40-209ENST00000573474 PKN1Q16512 942 aa15.84■□□□□ 0.13
CCDC40-209ENST00000573474 CCDC96Q2M329 555 aa15.84■□□□□ 0.13
CCDC40-209ENST00000573474 RASGRP2Q7LDG7 609 aa15.84■□□□□ 0.13
CCDC40-209ENST00000573474 AIFM3Q96NN9 605 aa15.84■□□□□ 0.13
CCDC40-209ENST00000573474 ZSCAN16Q9H4T2 348 aaPredicted RBP15.84■□□□□ 0.13
CCDC40-209ENST00000573474 RRAGCQ9HB90 399 aa15.84■□□□□ 0.13
CCDC40-209ENST00000573474 GOPCQ9HD26 462 aa15.84■□□□□ 0.13
CCDC40-209ENST00000573474 GPCPD1Q9NPB8 672 aa15.84■□□□□ 0.13
CCDC40-209ENST00000573474 PICK1Q9NRD5 415 aa15.84■□□□□ 0.13
CCDC40-209ENST00000573474 CLEC11AQ9Y240 323 aa15.84■□□□□ 0.13
CCDC40-209ENST00000573474 FRMPD2Q68DX3 1309 aaPredicted RBP15.84■□□□□ 0.13
CCDC40-209ENST00000573474 SSC5DA1L4H1 1573 aa15.83■□□□□ 0.13
CCDC40-209ENST00000573474 UBE2Q2LH0YL09 131 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms