RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 G2E3Q7L622 706 aa7.39□□□□□ -1.23
VPS53-208ENST00000570650 FASTKD5Q7L8L6 764 aaKnown RBP7.39□□□□□ -1.23
VPS53-208ENST00000570650 LINS1Q8NG48 757 aa7.39□□□□□ -1.23
VPS53-208ENST00000570650 TBC1D22AQ8WUA7 517 aa7.39□□□□□ -1.23
VPS53-208ENST00000570650 ZDHHC15Q96MV8 337 aa7.39□□□□□ -1.23
VPS53-208ENST00000570650 GUCD1Q96NT3 240 aa7.39□□□□□ -1.23
VPS53-208ENST00000570650 MRIQ9BWK5 157 aa7.39□□□□□ -1.23
VPS53-208ENST00000570650 MAST3O60307 1309 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 AXIN1O15169 862 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 NR3C2P08235 984 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 CHAF1AQ13111 956 aaPredicted RBP7.38□□□□□ -1.23
VPS53-208ENST00000570650 CTC1Q2NKJ3 1217 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 APOBEC3HQ6NTF7 200 aaKnown RBP7.38□□□□□ -1.23
VPS53-208ENST00000570650 LMBR1LQ6UX01 489 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 VPS37DQ86XT2 251 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 PNMA1Q8ND90 353 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 ADAM32Q8TC27 787 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 FAM151AQ8WW52 585 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 DNAAF4Q8WXU2 420 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 COA7Q96BR5 231 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 ZNF594Q96JF6 807 aaPredicted RBP7.38□□□□□ -1.23
VPS53-208ENST00000570650 C11orf49Q9H6J7 331 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 ADAMTS8Q9UP79 889 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 SLC45A1Q9Y2W3 748 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 GPSM3Q9Y4H4 160 aa7.38□□□□□ -1.23
VPS53-208ENST00000570650 MYBBP1AQ9BQG0 1328 aaKnown RBP7.37□□□□□ -1.23
VPS53-208ENST00000570650 A0A0G2JLL6 359 aaPredicted RBP7.37□□□□□ -1.23
VPS53-208ENST00000570650 APAF1O14727 1248 aa7.37□□□□□ -1.23
VPS53-208ENST00000570650 FRAT2O75474 233 aaPredicted RBP7.37□□□□□ -1.23
VPS53-208ENST00000570650 HMGCRP04035 888 aa7.37□□□□□ -1.23
VPS53-208ENST00000570650 FLIIQ13045 1269 aa7.37□□□□□ -1.23
VPS53-208ENST00000570650 FKBP5Q13451 457 aaPredicted RBP7.37□□□□□ -1.23
VPS53-208ENST00000570650 HHIPL2Q6UWX4 724 aa7.37□□□□□ -1.23
VPS53-208ENST00000570650 PRRT2Q7Z6L0 340 aaPredicted RBP7.37□□□□□ -1.23
VPS53-208ENST00000570650 FBXO33Q7Z6M2 555 aa7.37□□□□□ -1.23
VPS53-208ENST00000570650 ZBTB33Q86T24 672 aa7.37□□□□□ -1.23
VPS53-208ENST00000570650 SMCR8Q8TEV9 937 aaPredicted RBP7.37□□□□□ -1.23
VPS53-208ENST00000570650 IQSEC3Q9UPP2 1182 aaPredicted RBP7.37□□□□□ -1.23
VPS53-208ENST00000570650 SUGT1Q9Y2Z0 365 aa7.37□□□□□ -1.23
VPS53-208ENST00000570650 MAP4K5Q9Y4K4 846 aa7.37□□□□□ -1.23
VPS53-208ENST00000570650 DOCK3Q8IZD9 2030 aa7.37□□□□□ -1.23
VPS53-208ENST00000570650 UNC80Q8N2C7 3258 aa7.37□□□□□ -1.23
VPS53-208ENST00000570650 FBXO45P0C2W1 286 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 FSHRP23945 695 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 TCP10Q12799 353 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 FAM110CQ1W6H9 321 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 TMEM132AQ24JP5 1023 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 TWISTNBQ3B726 338 aaPredicted RBP7.36□□□□□ -1.23
VPS53-208ENST00000570650 CAVIN4Q5BKX8 364 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 EPHA10Q5JZY3 1008 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 GADL1Q6ZQY3 521 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 VASH1Q7L8A9 365 aaPredicted RBP7.36□□□□□ -1.23
VPS53-208ENST00000570650 SCYL3Q8IZE3 742 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 ANKRD13CQ8N6S4 541 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 FAM161BQ96MY7 647 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 PICK1Q9NRD5 415 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 OGDHLQ9ULD0 1010 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 NDUFB9Q9Y6M9 179 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 ZHX2Q9Y6X8 837 aa7.36□□□□□ -1.23
VPS53-208ENST00000570650 COL2A1P02458 1487 aaPredicted RBP7.36□□□□□ -1.23
VPS53-208ENST00000570650 DDX60LQ5H9U9 1706 aaKnown RBP7.35□□□□□ -1.23
VPS53-208ENST00000570650 AK9Q5TCS8 1911 aa7.35□□□□□ -1.23
VPS53-208ENST00000570650 PFASO15067 1338 aa7.35□□□□□ -1.23
VPS53-208ENST00000570650 MCM6Q14566 821 aa7.35□□□□□ -1.23
VPS53-208ENST00000570650 MAFAQ8NHW3 353 aaPredicted RBP7.35□□□□□ -1.23
VPS53-208ENST00000570650 KLF16Q9BXK1 252 aaPredicted RBP7.35□□□□□ -1.23
VPS53-208ENST00000570650 AGTPBP1Q9UPW5 1226 aa7.35□□□□□ -1.23
VPS53-208ENST00000570650 AFG3L2Q9Y4W6 797 aa7.35□□□□□ -1.23
VPS53-208ENST00000570650 MROH5Q6ZUA9 1318 aa7.34□□□□□ -1.23
VPS53-208ENST00000570650 ZBBXA8MT70 800 aa7.34□□□□□ -1.23
VPS53-208ENST00000570650 GRM8O00222 908 aa7.34□□□□□ -1.23
VPS53-208ENST00000570650 COL6A1P12109 1028 aa7.34□□□□□ -1.23
VPS53-208ENST00000570650 TIMP2P16035 220 aa7.34□□□□□ -1.23
VPS53-208ENST00000570650 PTPRAP18433 802 aa7.34□□□□□ -1.23
VPS53-208ENST00000570650 NFIAQ12857 509 aa7.34□□□□□ -1.23
VPS53-208ENST00000570650 NR5A1Q13285 461 aa7.34□□□□□ -1.23
VPS53-208ENST00000570650 CDC42EP5Q6NZY7 148 aa7.34□□□□□ -1.23
VPS53-208ENST00000570650 TSR2Q969E8 191 aaKnown RBP7.34□□□□□ -1.23
VPS53-208ENST00000570650 CDX2Q99626 313 aaPredicted RBP7.34□□□□□ -1.23
VPS53-208ENST00000570650 LBHD1Q9BQE6 289 aaPredicted RBP7.34□□□□□ -1.23
VPS53-208ENST00000570650 PUS3Q9BZE2 481 aaKnown RBP7.34□□□□□ -1.23
VPS53-208ENST00000570650 TRIM75PA6NK02 468 aa7.33□□□□□ -1.24
VPS53-208ENST00000570650 PHF20L1A8MW92 1017 aa7.33□□□□□ -1.24
VPS53-208ENST00000570650 APBB1O00213 710 aa7.33□□□□□ -1.24
VPS53-208ENST00000570650 CAPN5O15484 640 aaPredicted RBP7.33□□□□□ -1.24
VPS53-208ENST00000570650 GCLCP48506 637 aaPredicted RBP7.33□□□□□ -1.24
VPS53-208ENST00000570650 WDR4P57081 412 aaKnown RBP7.33□□□□□ -1.24
VPS53-208ENST00000570650 LRRC26Q2I0M4 334 aa7.33□□□□□ -1.24
VPS53-208ENST00000570650 METTL24Q5JXM2 366 aa7.33□□□□□ -1.24
VPS53-208ENST00000570650 BEND3Q5T5X7 828 aa7.33□□□□□ -1.24
VPS53-208ENST00000570650 MAP3K21Q5TCX8 1036 aa7.33□□□□□ -1.24
VPS53-208ENST00000570650 WDR66Q8TBY9 1149 aa7.33□□□□□ -1.24
VPS53-208ENST00000570650 TRIB2Q92519 343 aa7.33□□□□□ -1.24
VPS53-208ENST00000570650 KCTD15Q96SI1 283 aaPredicted RBP7.33□□□□□ -1.24
VPS53-208ENST00000570650 ZFAND3Q9H8U3 227 aa7.33□□□□□ -1.24
VPS53-208ENST00000570650 GJD2Q9UKL4 321 aa7.33□□□□□ -1.24
VPS53-208ENST00000570650 DAGLAQ9Y4D2 1042 aa7.33□□□□□ -1.24
VPS53-208ENST00000570650 LRRFIP2Q9Y608 721 aaKnown RBP7.33□□□□□ -1.24
VPS53-208ENST00000570650 PTPRFP10586 1907 aa7.33□□□□□ -1.24
VPS53-208ENST00000570650 ATRNL1Q5VV63 1379 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms