RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TTLL1O95922 423 aa10.95□□□□□ -0.66
VPS35-211ENST00000569950 SNHG28P0DPA3 235 aa10.95□□□□□ -0.66
VPS35-211ENST00000569950 ZKSCAN1P17029 563 aaPredicted RBP10.95□□□□□ -0.66
VPS35-211ENST00000569950 RPS6KB1P23443 525 aa10.95□□□□□ -0.66
VPS35-211ENST00000569950 HMGCS2P54868 508 aa10.95□□□□□ -0.66
VPS35-211ENST00000569950 KIF23Q02241 960 aaPredicted RBP10.95□□□□□ -0.66
VPS35-211ENST00000569950 TOB2Q14106 344 aaPredicted RBP10.95□□□□□ -0.66
VPS35-211ENST00000569950 KRT32Q14532 448 aa10.95□□□□□ -0.66
VPS35-211ENST00000569950 TREML2Q5T2D2 321 aa10.95□□□□□ -0.66
VPS35-211ENST00000569950 DHX32Q7L7V1 743 aaKnown RBP10.95□□□□□ -0.66
VPS35-211ENST00000569950 DGKHQ86XP1 1220 aa10.95□□□□□ -0.66
VPS35-211ENST00000569950 LRRC47Q8N1G4 583 aaKnown RBP10.95□□□□□ -0.66
VPS35-211ENST00000569950 CCDC102AQ96A19 550 aa10.95□□□□□ -0.66
VPS35-211ENST00000569950 TBC1D2Q9BYX2 928 aa10.95□□□□□ -0.66
VPS35-211ENST00000569950 UPF3BQ9BZI7 483 aaKnown RBP10.95□□□□□ -0.66
VPS35-211ENST00000569950 TOMM22Q9NS69 142 aa10.95□□□□□ -0.66
VPS35-211ENST00000569950 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.95□□□□□ -0.66
VPS35-211ENST00000569950 CLIP2Q9UDT6 1046 aa10.95□□□□□ -0.66
VPS35-211ENST00000569950 HTTP42858 3142 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 ADGRA2Q96PE1 1338 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 ZSWIM8A7E2V4 1837 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 USP17L10C9JJH3 530 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 VCAM1P19320 739 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 CASTP20810 708 aaKnown RBP10.94□□□□□ -0.66
VPS35-211ENST00000569950 MCM5P33992 734 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 TM4SF4P48230 202 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 EVCP57679 992 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 TROAPQ12815 778 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 RUFY3Q7L099 469 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 RALYLQ86SE5 291 aaKnown RBP10.94□□□□□ -0.66
VPS35-211ENST00000569950 SGMS1Q86VZ5 419 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 FAM43AQ8N2R8 423 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 MTA3Q9BTC8 594 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 VCPKMTQ9H867 229 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 BRPF3Q9ULD4 1205 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 SYNPO2Q9UMS6 1093 aa10.94□□□□□ -0.66
VPS35-211ENST00000569950 CCL15-CCL14A0A0B4J2E2 113 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 BTBD19C9JJ37 291 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 F5H6K3 240 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 CD2BP2O95400 341 aaKnown RBP10.93□□□□□ -0.66
VPS35-211ENST00000569950 NDUFB10O96000 172 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 TOP1P11387 765 aaKnown RBP10.93□□□□□ -0.66
VPS35-211ENST00000569950 LIFRP42702 1097 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 KLRC3Q07444 240 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 TRDNQ13061 729 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 NOGQ13253 232 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 SNAPC2Q13487 334 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 CCL15Q16663 113 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 GMCL1P1Q8NEA9 526 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 NUP88Q99567 741 aaPredicted RBP10.93□□□□□ -0.66
VPS35-211ENST00000569950 ALDH8A1Q9H2A2 487 aaPredicted RBP10.93□□□□□ -0.66
VPS35-211ENST00000569950 AS3MTQ9HBK9 375 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 STX8Q9UNK0 236 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 HPS5Q9UPZ3 1129 aa10.93□□□□□ -0.66
VPS35-211ENST00000569950 DOCK3Q8IZD9 2030 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 NID2Q14112 1375 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 MYH6P13533 1939 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 C19orf81C9J6K1 198 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 IFIT3O14879 490 aaKnown RBP10.92□□□□□ -0.66
VPS35-211ENST00000569950 PDHBP11177 359 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 MCCP23508 829 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 HOXA7P31268 230 aaPredicted RBP10.92□□□□□ -0.66
VPS35-211ENST00000569950 GTF2A2P52657 109 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 ZYXQ15942 572 aaKnown RBP10.92□□□□□ -0.66
VPS35-211ENST00000569950 TMEM67Q5HYA8 995 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 BLOC1S2Q6QNY1 142 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 USP17L2Q6R6M4 530 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 Q6ZUG5 572 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 IQCA1Q86XH1 822 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 SPICE1Q8N0Z3 855 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 PROCA1Q8NCQ7 364 aaPredicted RBP10.92□□□□□ -0.66
VPS35-211ENST00000569950 PNMA1Q8ND90 353 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 GMCL1Q96IK5 515 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 TMEM87BQ96K49 555 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 R3HDMLQ9H3Y0 253 aa10.92□□□□□ -0.66
VPS35-211ENST00000569950 FAM217BQ9NTX9 383 aaPredicted RBP10.92□□□□□ -0.66
VPS35-211ENST00000569950 MANSC4A6NHS7 340 aaPredicted RBP10.91□□□□□ -0.66
VPS35-211ENST00000569950 EIF5BO60841 1220 aaKnown RBP10.91□□□□□ -0.66
VPS35-211ENST00000569950 HMGB1P09429 215 aaKnown RBP10.91□□□□□ -0.66
VPS35-211ENST00000569950 CETPP11597 493 aa10.91□□□□□ -0.66
VPS35-211ENST00000569950 MAP2K2P36507 400 aa10.91□□□□□ -0.66
VPS35-211ENST00000569950 ATP2B2Q01814 1243 aa10.91□□□□□ -0.66
VPS35-211ENST00000569950 ST3GAL1Q11201 340 aa10.91□□□□□ -0.66
VPS35-211ENST00000569950 ANKRD23Q86SG2 305 aa10.91□□□□□ -0.66
VPS35-211ENST00000569950 IFNL1Q8IU54 200 aa10.91□□□□□ -0.66
VPS35-211ENST00000569950 UBAC1Q9BSL1 405 aa10.91□□□□□ -0.66
VPS35-211ENST00000569950 MYL10Q9BUA6 226 aa10.91□□□□□ -0.66
VPS35-211ENST00000569950 ARHGEF10LQ9HCE6 1279 aa10.91□□□□□ -0.66
VPS35-211ENST00000569950 FBXO28Q9NVF7 368 aa10.91□□□□□ -0.66
VPS35-211ENST00000569950 AGTPBP1Q9UPW5 1226 aa10.91□□□□□ -0.66
VPS35-211ENST00000569950 LCTP09848 1927 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 MGAMO43451 1857 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 WDR46O15213 610 aaKnown RBP10.9□□□□□ -0.66
VPS35-211ENST00000569950 PEX10O60683 326 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 LARGE1O95461 756 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 PSMA5P28066 241 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 USP14P54578 494 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 AK2P54819 239 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 CAP1Q01518 475 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 ZNF543Q08ER8 600 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms