RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 LCMT1Q9UIC8 334 aa12.78□□□□□ -0.36
CLN3-238ENST00000569430 MROH7-TTC4A0A0A0MT08 1334 aa12.78□□□□□ -0.36
CLN3-238ENST00000569430 H3BQF6 201 aa12.77□□□□□ -0.36
CLN3-238ENST00000569430 IRS4O14654 1257 aaPredicted RBP12.77□□□□□ -0.36
CLN3-238ENST00000569430 PPFIA4O75335 1185 aa12.77□□□□□ -0.36
CLN3-238ENST00000569430 PDE6AP16499 860 aa12.77□□□□□ -0.36
CLN3-238ENST00000569430 CDC27P30260 824 aa12.77□□□□□ -0.36
CLN3-238ENST00000569430 PTPROQ16827 1216 aa12.77□□□□□ -0.36
CLN3-238ENST00000569430 SPTY2D1Q68D10 685 aaPredicted RBP12.77□□□□□ -0.36
CLN3-238ENST00000569430 CPLX4Q7Z7G2 160 aa12.77□□□□□ -0.36
CLN3-238ENST00000569430 MFAP3LO75121 409 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 MAGEA1P43355 309 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 KCNJ6P48051 423 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 PTGDRQ13258 359 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 TCERG1LQ5VWI1 586 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 C2CD5Q86YS7 1000 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 FANCBQ8NB91 859 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 PANX2Q96RD6 677 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 UBA5Q9GZZ9 404 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 ZSWIM5Q9P217 1185 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 SLC7A5Q01650 507 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 PDE4DQ08499 809 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 C2orf54Q08AI8 447 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 NCAPHQ15003 741 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 RAD9BQ6WBX8 426 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 USP49Q70CQ1 688 aa12.77□□□□□ -0.37
CLN3-238ENST00000569430 TRIM65Q6PJ69 517 aa12.76□□□□□ -0.37
CLN3-238ENST00000569430 KLHL7Q8IXQ5 586 aa12.76□□□□□ -0.37
CLN3-238ENST00000569430 IFNL3Q8IZI9 196 aa12.76□□□□□ -0.37
CLN3-238ENST00000569430 CALML4Q96GE6 196 aa12.76□□□□□ -0.37
CLN3-238ENST00000569430 TSG101Q99816 390 aa12.76□□□□□ -0.37
CLN3-238ENST00000569430 IFIH1Q9BYX4 1025 aaKnown RBP12.76□□□□□ -0.37
CLN3-238ENST00000569430 KAT14Q9H8E8 782 aa12.76□□□□□ -0.37
CLN3-238ENST00000569430 A0A087WUV0 522 aaPredicted RBP12.76□□□□□ -0.37
CLN3-238ENST00000569430 POTEDQ86YR6 584 aa12.76□□□□□ -0.37
CLN3-238ENST00000569430 EFCAB13Q8IY85 973 aa12.76□□□□□ -0.37
CLN3-238ENST00000569430 SPATA31D1Q6ZQQ2 1576 aa12.76□□□□□ -0.37
CLN3-238ENST00000569430 CYB5R4Q7L1T6 521 aa12.76□□□□□ -0.37
CLN3-238ENST00000569430 NOA1Q8NC60 698 aaKnown RBP12.76□□□□□ -0.37
CLN3-238ENST00000569430 JAG2Q9Y219 1238 aa12.76□□□□□ -0.37
CLN3-238ENST00000569430 PLEKHG1Q9ULL1 1385 aa12.76□□□□□ -0.37
CLN3-238ENST00000569430 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.76□□□□□ -0.37
CLN3-238ENST00000569430 E7EVH7 732 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 NDUFA10O95299 355 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 KIF5BP33176 963 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 AMPD3Q01432 767 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 KRT31Q15323 416 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 ZFYVE27Q5T4F4 411 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 PNKPQ96T60 521 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 NRXN3Q9Y4C0 1643 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 SH2B2O14492 632 aaPredicted RBP12.75□□□□□ -0.37
CLN3-238ENST00000569430 GGCXP38435 758 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 PHKA1P46020 1223 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 MAP2K1Q02750 393 aaPredicted RBP12.75□□□□□ -0.37
CLN3-238ENST00000569430 CAVIN4Q5BKX8 364 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 ZCRB1Q8TBF4 217 aaKnown RBP12.75□□□□□ -0.37
CLN3-238ENST00000569430 NLRC4Q9NPP4 1024 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 UBE2Q2LH0YL09 131 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 BUB1O43683 1085 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 FGFR1OPO95684 399 aaKnown RBP12.75□□□□□ -0.37
CLN3-238ENST00000569430 SDR42E1Q8WUS8 393 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 FERMT2Q96AC1 680 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 SPAG5Q96R06 1193 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 DENND2AQ9ULE3 1009 aa12.75□□□□□ -0.37
CLN3-238ENST00000569430 PRKAB2O43741 272 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 MMP1P03956 469 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 EZRP15311 586 aaKnown RBP12.74□□□□□ -0.37
CLN3-238ENST00000569430 PTPREP23469 700 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 GRIN1Q05586 938 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 TADA2BQ86TJ2 420 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 TBC1D10CQ8IV04 446 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 MB21D2Q8IYB1 491 aaPredicted RBP12.74□□□□□ -0.37
CLN3-238ENST00000569430 UBLCP1Q8WVY7 318 aaPredicted RBP12.74□□□□□ -0.37
CLN3-238ENST00000569430 MAGEB6P1A0A0J9YX57 407 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 B4DLN1 442 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 SCARF1Q14162 830 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 MUM1L1Q5H9M0 696 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 OXER1Q8TDS5 423 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 GSDMAQ96QA5 445 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 TRIM10Q9UDY6 481 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 TUBE1Q9UJT0 475 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 LOC102724159A0A0B4J2E5 919 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 FXR1P51114 621 aaKnown RBP eCLIP12.74□□□□□ -0.37
CLN3-238ENST00000569430 NAA25Q14CX7 972 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 PWP2Q15269 919 aaKnown RBP12.74□□□□□ -0.37
CLN3-238ENST00000569430 RRAGAQ7L523 313 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 ZNF444Q8N0Y2 327 aaPredicted RBP12.74□□□□□ -0.37
CLN3-238ENST00000569430 CABS1Q96KC9 395 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 JPH2Q9BR39 696 aaPredicted RBP12.74□□□□□ -0.37
CLN3-238ENST00000569430 TRIM31Q9BZY9 425 aa12.74□□□□□ -0.37
CLN3-238ENST00000569430 NUTM2BA6NNL0 878 aaPredicted RBP12.73□□□□□ -0.37
CLN3-238ENST00000569430 NUTM2EB1AL46 878 aaPredicted RBP12.73□□□□□ -0.37
CLN3-238ENST00000569430 HGSO14964 777 aaPredicted RBP12.73□□□□□ -0.37
CLN3-238ENST00000569430 ZRANB2O95218 330 aaKnown RBP eCLIP12.73□□□□□ -0.37
CLN3-238ENST00000569430 PHKG2P15735 406 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 LETM2Q2VYF4 491 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 NBPF14Q5TI25 921 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 FOXR1Q6PIV2 292 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 ARHGEF25Q86VW2 580 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 PAGE5Q96GU1 130 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms