RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 ICA1Q05084 483 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 RAB3GAP1Q15042 981 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 CCDC178Q5BJE1 867 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 TMEM67Q5HYA8 995 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 CCDC84Q86UT8 332 aaPredicted RBP9.94□□□□□ -0.82
SF3B3-212ENST00000568539 DGKHQ86XP1 1220 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 FBXL16Q8N461 479 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 ENAHQ8N8S7 591 aaPredicted RBP9.94□□□□□ -0.82
SF3B3-212ENST00000568539 ANKS1AQ92625 1134 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 CLMNQ96JQ2 1002 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 TTC14Q96N46 770 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 LRRC2Q9BYS8 371 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 AGXT2Q9BYV1 514 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 ALDH8A1Q9H2A2 487 aaPredicted RBP9.94□□□□□ -0.82
SF3B3-212ENST00000568539 GPHNQ9NQX3 736 aaPredicted RBP9.94□□□□□ -0.82
SF3B3-212ENST00000568539 PICK1Q9NRD5 415 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 PDRG1Q9NUG6 133 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 NYAP2Q9P242 653 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 CSADQ9Y600 493 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 PAPPA2Q9BXP8 1791 aa9.93□□□□□ -0.82
SF3B3-212ENST00000568539 ERICH2A1L162 156 aa9.93□□□□□ -0.82
SF3B3-212ENST00000568539 SPDYE5A6NIY4 337 aa9.93□□□□□ -0.82
SF3B3-212ENST00000568539 USP17L5A8MUK1 530 aa9.93□□□□□ -0.82
SF3B3-212ENST00000568539 TTLL1O95922 423 aa9.93□□□□□ -0.82
SF3B3-212ENST00000568539 EEF2P13639 858 aaKnown RBP9.93□□□□□ -0.82
SF3B3-212ENST00000568539 TOB2Q14106 344 aaPredicted RBP9.93□□□□□ -0.82
SF3B3-212ENST00000568539 SART3Q15020 963 aaKnown RBP9.93□□□□□ -0.82
SF3B3-212ENST00000568539 PPP4R3BQ5MIZ7 849 aa9.93□□□□□ -0.82
SF3B3-212ENST00000568539 Q6ZUG5 572 aa9.93□□□□□ -0.82
SF3B3-212ENST00000568539 IL27Q8NEV9 243 aa9.93□□□□□ -0.82
SF3B3-212ENST00000568539 ELP3Q9H9T3 547 aa9.93□□□□□ -0.82
SF3B3-212ENST00000568539 LY9Q9HBG7 655 aa9.93□□□□□ -0.82
SF3B3-212ENST00000568539 SENP2Q9HC62 589 aa9.93□□□□□ -0.82
SF3B3-212ENST00000568539 STX8Q9UNK0 236 aa9.93□□□□□ -0.82
SF3B3-212ENST00000568539 TRPC6Q9Y210 931 aa9.93□□□□□ -0.82
SF3B3-212ENST00000568539 A0A1W2PRG0 241 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 TMEM88BA6NKF7 163 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 FOXN1O15353 648 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 LIFRP42702 1097 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 AK2P54819 239 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 EVCP57679 992 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 WTAPQ15007 396 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 IFIT1BQ5T764 474 aaKnown RBP9.92□□□□□ -0.82
SF3B3-212ENST00000568539 SAPCD2Q86UD0 394 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 SGMS1Q86VZ5 419 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 ERO1BQ86YB8 467 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 TMTC2Q8N394 836 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 ACER1Q8TDN7 264 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 BRF1Q92994 677 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 MKL1Q969V6 931 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 TMEM47Q9BQJ4 181 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 WDR18Q9BV38 432 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 TBC1D2Q9BYX2 928 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 CLIP2Q9UDT6 1046 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 SYNPO2Q9UMS6 1093 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 TLL2Q9Y6L7 1015 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 ZHX2Q9Y6X8 837 aa9.92□□□□□ -0.82
SF3B3-212ENST00000568539 ST18O60284 1047 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 TOP1P11387 765 aaKnown RBP9.91□□□□□ -0.82
SF3B3-212ENST00000568539 ECE1P42892 770 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 HUNKP57058 714 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 FGD1P98174 961 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 ATP2B2Q01814 1243 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 PPATQ06203 517 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 ANKRD1Q15327 319 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 LRRC47Q8N1G4 583 aaKnown RBP9.91□□□□□ -0.82
SF3B3-212ENST00000568539 ZNF280CQ8ND82 737 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 SLC10A4Q96EP9 437 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 KIAA1683Q9H0B3 1180 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 KAT14Q9H8E8 782 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 AS3MTQ9HBK9 375 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 ARHGEF10LQ9HCE6 1279 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 PCDH10Q9P2E7 1040 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 BRPF3Q9ULD4 1205 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 TMX2Q9Y320 296 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 AFG3L2Q9Y4W6 797 aa9.91□□□□□ -0.82
SF3B3-212ENST00000568539 CCDC69A6NI79 296 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 USP17L10C9JJH3 530 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 CD2BP2O95400 341 aaKnown RBP9.9□□□□□ -0.82
SF3B3-212ENST00000568539 GJA5P36382 358 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 APOBRQ0VD83 1088 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 SPP2Q13103 211 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 PPIL2Q13356 520 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 NFXL1Q6ZNB6 911 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 PNMA1Q8ND90 353 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 GMCL1P1Q8NEA9 526 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 OPTNQ96CV9 577 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 OTUD5Q96G74 571 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 HHIPL1Q96JK4 782 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 LARP6Q9BRS8 491 aaKnown RBP9.9□□□□□ -0.82
SF3B3-212ENST00000568539 TMEM106CQ9BVX2 250 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 SH2D4AQ9H788 454 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 TPCN1Q9ULQ1 816 aa9.9□□□□□ -0.82
SF3B3-212ENST00000568539 GREB1LQ9C091 1923 aaPredicted RBP9.9□□□□□ -0.83
SF3B3-212ENST00000568539 KLF18A0A0U1RQI7 1052 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 TRIM75PA6NK02 468 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 F5H6K3 240 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 IRF6O14896 467 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 TIE1P35590 1138 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 BACE1P56817 501 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms