RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 ZNF587Q96SQ5 575 aaPredicted RBP7.66□□□□□ -1.18
VPS39-209ENST00000568029 SRA1Q9HD15 236 aaKnown RBP7.66□□□□□ -1.18
VPS39-209ENST00000568029 BRCA1P38398 1863 aaKnown RBP7.66□□□□□ -1.18
VPS39-209ENST00000568029 UBR3Q6ZT12 1888 aa7.66□□□□□ -1.18
VPS39-209ENST00000568029 PXDNLA1KZ92 1463 aa7.65□□□□□ -1.18
VPS39-209ENST00000568029 B3GALT4O96024 378 aa7.65□□□□□ -1.18
VPS39-209ENST00000568029 C4BP0C0L5 1744 aa7.65□□□□□ -1.18
VPS39-209ENST00000568029 RLBP1P12271 317 aa7.65□□□□□ -1.18
VPS39-209ENST00000568029 DGKGP49619 791 aa7.65□□□□□ -1.18
VPS39-209ENST00000568029 CABP4P57796 275 aa7.65□□□□□ -1.18
VPS39-209ENST00000568029 IRX6P78412 446 aaPredicted RBP7.65□□□□□ -1.18
VPS39-209ENST00000568029 MEI1Q5TIA1 1274 aa7.65□□□□□ -1.18
VPS39-209ENST00000568029 MORC1Q86VD1 984 aa7.65□□□□□ -1.18
VPS39-209ENST00000568029 ARHGEF25Q86VW2 580 aa7.65□□□□□ -1.18
VPS39-209ENST00000568029 NUDT8Q8WV74 236 aa7.65□□□□□ -1.18
VPS39-209ENST00000568029 KAT6BQ8WYB5 2073 aa7.65□□□□□ -1.18
VPS39-209ENST00000568029 RNF34Q969K3 372 aa7.65□□□□□ -1.18
VPS39-209ENST00000568029 SOX17Q9H6I2 414 aaPredicted RBP7.65□□□□□ -1.18
VPS39-209ENST00000568029 KIF13BQ9NQT8 1826 aa7.65□□□□□ -1.18
VPS39-209ENST00000568029 TNRC6CQ9HCJ0 1690 aaKnown RBP7.64□□□□□ -1.19
VPS39-209ENST00000568029 CGNL1Q0VF96 1302 aa7.64□□□□□ -1.19
VPS39-209ENST00000568029 RNF123Q5XPI4 1314 aa7.64□□□□□ -1.19
VPS39-209ENST00000568029 H3BRJ5 948 aa7.64□□□□□ -1.19
VPS39-209ENST00000568029 HOXB4P17483 251 aaPredicted RBP7.64□□□□□ -1.19
VPS39-209ENST00000568029 PCDH1Q08174 1060 aa7.64□□□□□ -1.19
VPS39-209ENST00000568029 COL9A3Q14050 684 aaPredicted RBP7.64□□□□□ -1.19
VPS39-209ENST00000568029 METTL16Q86W50 562 aaKnown RBP7.64□□□□□ -1.19
VPS39-209ENST00000568029 MAP4K3Q8IVH8 894 aa7.64□□□□□ -1.19
VPS39-209ENST00000568029 WHAMMQ8TF30 809 aa7.64□□□□□ -1.19
VPS39-209ENST00000568029 SLC12A5Q9H2X9 1139 aa7.64□□□□□ -1.19
VPS39-209ENST00000568029 TTF2Q9UNY4 1162 aaKnown RBP7.64□□□□□ -1.19
VPS39-209ENST00000568029 ADAMTS8Q9UP79 889 aa7.64□□□□□ -1.19
VPS39-209ENST00000568029 AKAP2Q9Y2D5 859 aa7.64□□□□□ -1.19
VPS39-209ENST00000568029 PPME1Q9Y570 386 aa7.64□□□□□ -1.19
VPS39-209ENST00000568029 CD2APQ9Y5K6 639 aa7.64□□□□□ -1.19
VPS39-209ENST00000568029 TNRC18O15417 2968 aaPredicted RBP7.64□□□□□ -1.19
VPS39-209ENST00000568029 ARHGEF15O94989 841 aa7.63□□□□□ -1.19
VPS39-209ENST00000568029 NID1P14543 1247 aa7.63□□□□□ -1.19
VPS39-209ENST00000568029 AMPD1P23109 780 aa7.63□□□□□ -1.19
VPS39-209ENST00000568029 HDLBPQ00341 1268 aaKnown RBP7.63□□□□□ -1.19
VPS39-209ENST00000568029 GDF6Q6KF10 455 aaPredicted RBP7.63□□□□□ -1.19
VPS39-209ENST00000568029 ADAMTSL4Q6UY14 1074 aa7.63□□□□□ -1.19
VPS39-209ENST00000568029 HS2ST1Q7LGA3 356 aa7.63□□□□□ -1.19
VPS39-209ENST00000568029 DTWD1Q8N5C7 304 aa7.63□□□□□ -1.19
VPS39-209ENST00000568029 DDX54Q8TDD1 881 aaKnown RBP7.63□□□□□ -1.19
VPS39-209ENST00000568029 SYTL4Q96C24 671 aaPredicted RBP7.63□□□□□ -1.19
VPS39-209ENST00000568029 CFAP53Q96M91 514 aa7.63□□□□□ -1.19
VPS39-209ENST00000568029 LACRTQ9GZZ8 138 aa7.63□□□□□ -1.19
VPS39-209ENST00000568029 SEC31BQ9NQW1 1179 aa7.63□□□□□ -1.19
VPS39-209ENST00000568029 TERF2IPQ9NYB0 399 aa7.63□□□□□ -1.19
VPS39-209ENST00000568029 RCAN3Q9UKA8 241 aa7.63□□□□□ -1.19
VPS39-209ENST00000568029 MON2Q7Z3U7 1717 aa7.63□□□□□ -1.19
VPS39-209ENST00000568029 PIK3R2O00459 728 aa7.62□□□□□ -1.19
VPS39-209ENST00000568029 ESRRAP11474 423 aaPredicted RBP7.62□□□□□ -1.19
VPS39-209ENST00000568029 EPHA1P21709 976 aa7.62□□□□□ -1.19
VPS39-209ENST00000568029 PPP2R3AQ06190 1150 aa7.62□□□□□ -1.19
VPS39-209ENST00000568029 PWP1Q13610 501 aa7.62□□□□□ -1.19
VPS39-209ENST00000568029 ERMP1Q7Z2K6 904 aa7.62□□□□□ -1.19
VPS39-209ENST00000568029 WFDC8Q8IUA0 241 aa7.62□□□□□ -1.19
VPS39-209ENST00000568029 SVOPQ8N4V2 548 aa7.62□□□□□ -1.19
VPS39-209ENST00000568029 IL22RA1Q8N6P7 574 aa7.62□□□□□ -1.19
VPS39-209ENST00000568029 NECAB3Q96P71 396 aaPredicted RBP7.62□□□□□ -1.19
VPS39-209ENST00000568029 RSRP1Q9BUV0 290 aa7.62□□□□□ -1.19
VPS39-209ENST00000568029 OSGEPQ9NPF4 335 aa7.62□□□□□ -1.19
VPS39-209ENST00000568029 TMEM39AQ9NV64 488 aa7.62□□□□□ -1.19
VPS39-209ENST00000568029 CCNL1Q9UK58 526 aaPredicted RBP7.62□□□□□ -1.19
VPS39-209ENST00000568029 MEGF6O75095 1541 aa7.62□□□□□ -1.19
VPS39-209ENST00000568029 ANKRD36BQ8N2N9 1353 aa7.61□□□□□ -1.19
VPS39-209ENST00000568029 FAM181BA6NEQ2 426 aa7.61□□□□□ -1.19
VPS39-209ENST00000568029 IL2RBP14784 551 aa7.61□□□□□ -1.19
VPS39-209ENST00000568029 FAAP100Q0VG06 881 aa7.61□□□□□ -1.19
VPS39-209ENST00000568029 IKBKEQ14164 716 aa7.61□□□□□ -1.19
VPS39-209ENST00000568029 CCDC85BQ15834 202 aaPredicted RBP7.61□□□□□ -1.19
VPS39-209ENST00000568029 ZNF423Q2M1K9 1284 aa7.61□□□□□ -1.19
VPS39-209ENST00000568029 FAM117BQ6P1L5 589 aa7.61□□□□□ -1.19
VPS39-209ENST00000568029 HDGFL2Q7Z4V5 671 aaPredicted RBP7.61□□□□□ -1.19
VPS39-209ENST00000568029 SH2B1Q9NRF2 756 aaPredicted RBP7.61□□□□□ -1.19
VPS39-209ENST00000568029 NSD3Q9BZ95 1437 aa7.61□□□□□ -1.19
VPS39-209ENST00000568029 ENC1O14682 589 aa7.6□□□□□ -1.19
VPS39-209ENST00000568029 RRP1P56182 461 aaKnown RBP7.6□□□□□ -1.19
VPS39-209ENST00000568029 RPS26P62854 115 aaKnown RBP7.6□□□□□ -1.19
VPS39-209ENST00000568029 SCARA3Q6AZY7 606 aa7.6□□□□□ -1.19
VPS39-209ENST00000568029 NEDD1Q8NHV4 660 aa7.6□□□□□ -1.19
VPS39-209ENST00000568029 SAMM50Q9Y512 469 aa7.6□□□□□ -1.19
VPS39-209ENST00000568029 TIAM2Q8IVF5 1701 aa7.6□□□□□ -1.19
VPS39-209ENST00000568029 ARFGEF1Q9Y6D6 1849 aa7.59□□□□□ -1.19
VPS39-209ENST00000568029 ARL4DP49703 201 aa7.59□□□□□ -1.19
VPS39-209ENST00000568029 TPTE2Q6XPS3 522 aa7.59□□□□□ -1.19
VPS39-209ENST00000568029 C8orf86Q6ZUL3 223 aa7.59□□□□□ -1.19
VPS39-209ENST00000568029 NT5DC4Q86YG4 428 aa7.59□□□□□ -1.19
VPS39-209ENST00000568029 KLHL23Q8NBE8 558 aa7.59□□□□□ -1.19
VPS39-209ENST00000568029 CCDC136Q96JN2 1154 aa7.59□□□□□ -1.19
VPS39-209ENST00000568029 TGIF2Q9GZN2 237 aa7.59□□□□□ -1.19
VPS39-209ENST00000568029 MAP2P11137 1827 aaKnown RBP7.59□□□□□ -1.19
VPS39-209ENST00000568029 TTC21BQ7Z4L5 1316 aa7.58□□□□□ -1.2
VPS39-209ENST00000568029 SBF1O95248 1867 aa7.58□□□□□ -1.2
VPS39-209ENST00000568029 ITGB4P16144 1822 aa7.58□□□□□ -1.2
VPS39-209ENST00000568029 SPDYE3A6NKU9 549 aa7.58□□□□□ -1.2
VPS39-209ENST00000568029 SOX1O00570 391 aaPredicted RBP7.58□□□□□ -1.2
VPS39-209ENST00000568029 FOXN1O15353 648 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms