RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 PRO3102Q9H379 93 aa22.54■■□□□ 1.2
CLN3-218ENST00000565688 ARHGEF10LQ9HCE6 1279 aa22.54■■□□□ 1.2
CLN3-218ENST00000565688 ECHDC1Q9NTX5 307 aa22.54■■□□□ 1.2
CLN3-218ENST00000565688 MFSD14CQ5VZR4 134 aa22.53■■□□□ 1.2
CLN3-218ENST00000565688 GPATCH3Q96I76 525 aa22.53■■□□□ 1.2
CLN3-218ENST00000565688 C11orf49Q9H6J7 331 aa22.53■■□□□ 1.2
CLN3-218ENST00000565688 USP17L12C9JPN9 530 aa22.52■■□□□ 1.2
CLN3-218ENST00000565688 USP17L21D6R901 530 aa22.52■■□□□ 1.2
CLN3-218ENST00000565688 SMARCA5O60264 1052 aaPredicted RBP22.52■■□□□ 1.2
CLN3-218ENST00000565688 HOXC6P09630 235 aa22.52■■□□□ 1.2
CLN3-218ENST00000565688 MNX1P50219 401 aaPredicted RBP22.52■■□□□ 1.2
CLN3-218ENST00000565688 ICA1Q05084 483 aa22.52■■□□□ 1.2
CLN3-218ENST00000565688 GRB14Q14449 540 aa22.52■■□□□ 1.2
CLN3-218ENST00000565688 MB21D1Q8N884 522 aa22.52■■□□□ 1.2
CLN3-218ENST00000565688 TMX2Q9Y320 296 aa22.52■■□□□ 1.2
CLN3-218ENST00000565688 SLC4A4Q9Y6R1 1079 aa22.52■■□□□ 1.2
CLN3-218ENST00000565688 A0A1W2PPC1 479 aa22.51■■□□□ 1.19
CLN3-218ENST00000565688 AKR1B1P15121 316 aa22.51■■□□□ 1.19
CLN3-218ENST00000565688 CDK8P49336 464 aa22.51■■□□□ 1.19
CLN3-218ENST00000565688 C16orf86Q6ZW13 317 aa22.51■■□□□ 1.19
CLN3-218ENST00000565688 MYH7P12883 1935 aa22.51■■□□□ 1.19
CLN3-218ENST00000565688 STRNO43815 780 aa22.5■■□□□ 1.19
CLN3-218ENST00000565688 CCND3P30281 292 aaPredicted RBP22.5■■□□□ 1.19
CLN3-218ENST00000565688 PUS7LQ9H0K6 701 aaKnown RBP22.5■■□□□ 1.19
CLN3-218ENST00000565688 DCTPP1Q9H773 170 aa22.5■■□□□ 1.19
CLN3-218ENST00000565688 VCPKMTQ9H867 229 aa22.5■■□□□ 1.19
CLN3-218ENST00000565688 MYH8P13535 1937 aa22.5■■□□□ 1.19
CLN3-218ENST00000565688 BAZ2AQ9UIF9 1905 aaKnown RBP22.49■■□□□ 1.19
CLN3-218ENST00000565688 CYP2D7A0A087X1C5 515 aa22.49■■□□□ 1.19
CLN3-218ENST00000565688 CHGBP05060 677 aa22.49■■□□□ 1.19
CLN3-218ENST00000565688 ATP2B2Q01814 1243 aa22.49■■□□□ 1.19
CLN3-218ENST00000565688 LHX8Q68G74 356 aa22.49■■□□□ 1.19
CLN3-218ENST00000565688 SIAH1Q8IUQ4 282 aa22.49■■□□□ 1.19
CLN3-218ENST00000565688 C7orf61Q8IZ16 206 aa22.49■■□□□ 1.19
CLN3-218ENST00000565688 SHCBP1Q8NEM2 672 aa22.49■■□□□ 1.19
CLN3-218ENST00000565688 MOV10L1Q9BXT6 1211 aaKnown RBP22.49■■□□□ 1.19
CLN3-218ENST00000565688 SPATC1LQ9H0A9 340 aa22.49■■□□□ 1.19
CLN3-218ENST00000565688 ARPP21Q9UBL0 812 aaPredicted RBP22.49■■□□□ 1.19
CLN3-218ENST00000565688 KIAA1755Q5JYT7 1200 aa22.48■■□□□ 1.19
CLN3-218ENST00000565688 CTR9Q6PD62 1173 aa22.48■■□□□ 1.19
CLN3-218ENST00000565688 KBTBD3Q8NAB2 608 aa22.48■■□□□ 1.19
CLN3-218ENST00000565688 KANSL2Q9H9L4 492 aa22.48■■□□□ 1.19
CLN3-218ENST00000565688 WDR46O15213 610 aaKnown RBP22.47■■□□□ 1.19
CLN3-218ENST00000565688 MSCO60682 206 aa22.47■■□□□ 1.19
CLN3-218ENST00000565688 FLOT1O75955 427 aa22.47■■□□□ 1.19
CLN3-218ENST00000565688 DSG3P32926 999 aa22.47■■□□□ 1.19
CLN3-218ENST00000565688 GIMAP6Q6P9H5 292 aa22.47■■□□□ 1.19
CLN3-218ENST00000565688 DPP9Q86TI2 863 aa22.47■■□□□ 1.19
CLN3-218ENST00000565688 CLEC10AQ8IUN9 316 aa22.47■■□□□ 1.19
CLN3-218ENST00000565688 SPICE1Q8N0Z3 855 aa22.47■■□□□ 1.19
CLN3-218ENST00000565688 STRBPQ96SI9 672 aaKnown RBP22.47■■□□□ 1.19
CLN3-218ENST00000565688 MROH8Q9H579 483 aa22.47■■□□□ 1.19
CLN3-218ENST00000565688 FLRT1Q9NZU1 646 aa22.47■■□□□ 1.19
CLN3-218ENST00000565688 ALPK3Q96L96 1907 aa22.47■■□□□ 1.19
CLN3-218ENST00000565688 ZFYP08048 801 aaPredicted RBP22.46■■□□□ 1.19
CLN3-218ENST00000565688 COL6A1P12109 1028 aa22.46■■□□□ 1.19
CLN3-218ENST00000565688 SLC5A4Q9NY91 659 aa22.46■■□□□ 1.19
CLN3-218ENST00000565688 STAP2Q9UGK3 403 aa22.46■■□□□ 1.19
CLN3-218ENST00000565688 A0A0G2JMZ2 1700 aa22.45■■□□□ 1.19
CLN3-218ENST00000565688 SMIM22K7EJ46 135 aa22.45■■□□□ 1.18
CLN3-218ENST00000565688 EEF2P13639 858 aaKnown RBP22.45■■□□□ 1.18
CLN3-218ENST00000565688 ERCC3P19447 782 aa22.45■■□□□ 1.18
CLN3-218ENST00000565688 ADORA2AP29274 412 aa22.45■■□□□ 1.18
CLN3-218ENST00000565688 SBK1Q52WX2 424 aa22.45■■□□□ 1.18
CLN3-218ENST00000565688 ABRAQ8N0Z2 381 aa22.45■■□□□ 1.18
CLN3-218ENST00000565688 NPLOC4Q8TAT6 608 aa22.45■■□□□ 1.18
CLN3-218ENST00000565688 APPBP2Q92624 585 aa22.45■■□□□ 1.18
CLN3-218ENST00000565688 GOPCQ9HD26 462 aa22.45■■□□□ 1.18
CLN3-218ENST00000565688 PFASO15067 1338 aa22.45■■□□□ 1.18
CLN3-218ENST00000565688 SZT2Q5T011 3432 aa22.45■■□□□ 1.18
CLN3-218ENST00000565688 ZNF236Q9UL36 1845 aa22.45■■□□□ 1.18
CLN3-218ENST00000565688 RLFQ13129 1914 aa22.45■■□□□ 1.18
CLN3-218ENST00000565688 RNF113AO15541 343 aaKnown RBP22.44■■□□□ 1.18
CLN3-218ENST00000565688 PLS1Q14651 629 aa22.44■■□□□ 1.18
CLN3-218ENST00000565688 LRRFIP1Q32MZ4 808 aaKnown RBP22.44■■□□□ 1.18
CLN3-218ENST00000565688 OLFML2BQ68BL8 750 aa22.44■■□□□ 1.18
CLN3-218ENST00000565688 ATG4CQ96DT6 458 aa22.44■■□□□ 1.18
CLN3-218ENST00000565688 DDX20Q9UHI6 824 aaKnown RBP22.44■■□□□ 1.18
CLN3-218ENST00000565688 IGHA2P01877 340 aa22.43■■□□□ 1.18
CLN3-218ENST00000565688 CNGA1P29973 690 aa22.43■■□□□ 1.18
CLN3-218ENST00000565688 CYP2C19P33261 490 aa22.43■■□□□ 1.18
CLN3-218ENST00000565688 BMP8BP34820 402 aa22.43■■□□□ 1.18
CLN3-218ENST00000565688 GDF15Q99988 308 aa22.43■■□□□ 1.18
CLN3-218ENST00000565688 ZMYND8Q9ULU4 1186 aaPredicted RBP22.43■■□□□ 1.18
CLN3-218ENST00000565688 GSG1L2A8MUP6 293 aa22.42■■□□□ 1.18
CLN3-218ENST00000565688 SLC25A27O95847 323 aa22.42■■□□□ 1.18
CLN3-218ENST00000565688 GNAT2P19087 354 aa22.42■■□□□ 1.18
CLN3-218ENST00000565688 NCAPG2Q86XI2 1143 aa22.42■■□□□ 1.18
CLN3-218ENST00000565688 OSBP2Q969R2 916 aa22.42■■□□□ 1.18
CLN3-218ENST00000565688 ADAMTS5Q9UNA0 930 aa22.42■■□□□ 1.18
CLN3-218ENST00000565688 TTC41PQ6P2S7 1318 aa22.41■■□□□ 1.18
CLN3-218ENST00000565688 CYBAP13498 195 aa22.41■■□□□ 1.18
CLN3-218ENST00000565688 TSHZ3Q63HK5 1081 aa22.41■■□□□ 1.18
CLN3-218ENST00000565688 MKNK2Q9HBH9 465 aa22.41■■□□□ 1.18
CLN3-218ENST00000565688 ROBO3Q96MS0 1386 aa22.4■■□□□ 1.18
CLN3-218ENST00000565688 DNAH12Q6ZR08 3092 aa22.4■■□□□ 1.18
CLN3-218ENST00000565688 ERC2O15083 957 aa22.4■■□□□ 1.18
CLN3-218ENST00000565688 FCER1AP12319 257 aa22.4■■□□□ 1.18
CLN3-218ENST00000565688 TMEM132BQ14DG7 1078 aa22.4■■□□□ 1.18
CLN3-218ENST00000565688 SAMD1Q6SPF0 538 aaPredicted RBP22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms