RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 NECAB2Q7Z6G3 386 aa20.71■□□□□ 0.91
VPS9D1-203ENST00000563798 PAWRQ96IZ0 340 aaKnown RBP20.71■□□□□ 0.91
VPS9D1-203ENST00000563798 STRBPQ96SI9 672 aaKnown RBP20.71■□□□□ 0.91
VPS9D1-203ENST00000563798 SLC4A4Q9Y6R1 1079 aa20.71■□□□□ 0.91
VPS9D1-203ENST00000563798 FXR1P51114 621 aaKnown RBP eCLIP20.7■□□□□ 0.9
VPS9D1-203ENST00000563798 CACNB2Q08289 660 aaPredicted RBP20.7■□□□□ 0.9
VPS9D1-203ENST00000563798 GIMAP6Q6P9H5 292 aa20.7■□□□□ 0.9
VPS9D1-203ENST00000563798 GPATCH3Q96I76 525 aa20.7■□□□□ 0.9
VPS9D1-203ENST00000563798 PRO3102Q9H379 93 aa20.7■□□□□ 0.9
VPS9D1-203ENST00000563798 SH2D4AQ9H788 454 aa20.7■□□□□ 0.9
VPS9D1-203ENST00000563798 BAZ2AQ9UIF9 1905 aaKnown RBP20.69■□□□□ 0.9
VPS9D1-203ENST00000563798 CYP2D7A0A087X1C5 515 aa20.69■□□□□ 0.9
VPS9D1-203ENST00000563798 SMIM22K7EJ46 135 aa20.69■□□□□ 0.9
VPS9D1-203ENST00000563798 IGHA2P01877 340 aa20.69■□□□□ 0.9
VPS9D1-203ENST00000563798 ICA1Q05084 483 aa20.69■□□□□ 0.9
VPS9D1-203ENST00000563798 GRB14Q14449 540 aa20.69■□□□□ 0.9
VPS9D1-203ENST00000563798 CCL14Q16627 93 aa20.69■□□□□ 0.9
VPS9D1-203ENST00000563798 SBK1Q52WX2 424 aa20.69■□□□□ 0.9
VPS9D1-203ENST00000563798 KIAA1755Q5JYT7 1200 aa20.69■□□□□ 0.9
VPS9D1-203ENST00000563798 VCPKMTQ9H867 229 aa20.69■□□□□ 0.9
VPS9D1-203ENST00000563798 ARHGEF10LQ9HCE6 1279 aa20.69■□□□□ 0.9
VPS9D1-203ENST00000563798 ARPP21Q9UBL0 812 aaPredicted RBP20.69■□□□□ 0.9
VPS9D1-203ENST00000563798 RLFQ13129 1914 aa20.68■□□□□ 0.9
VPS9D1-203ENST00000563798 ZFYP08048 801 aaPredicted RBP20.68■□□□□ 0.9
VPS9D1-203ENST00000563798 MB21D1Q8N884 522 aa20.68■□□□□ 0.9
VPS9D1-203ENST00000563798 SHCBP1Q8NEM2 672 aa20.68■□□□□ 0.9
VPS9D1-203ENST00000563798 DIS3LQ8TF46 1054 aaKnown RBP20.68■□□□□ 0.9
VPS9D1-203ENST00000563798 APPBP2Q92624 585 aa20.68■□□□□ 0.9
VPS9D1-203ENST00000563798 KANSL2Q9H9L4 492 aa20.68■□□□□ 0.9
VPS9D1-203ENST00000563798 PCDHB15Q9Y5E8 787 aa20.68■□□□□ 0.9
VPS9D1-203ENST00000563798 A0A0G2JMZ2 1700 aa20.67■□□□□ 0.9
VPS9D1-203ENST00000563798 STRNO43815 780 aa20.67■□□□□ 0.9
VPS9D1-203ENST00000563798 EVI5O60447 810 aa20.67■□□□□ 0.9
VPS9D1-203ENST00000563798 DSG3P32926 999 aa20.67■□□□□ 0.9
VPS9D1-203ENST00000563798 CHRDL2Q6WN34 429 aa20.67■□□□□ 0.9
VPS9D1-203ENST00000563798 OSBP2Q969R2 916 aa20.67■□□□□ 0.9
VPS9D1-203ENST00000563798 NBPF3Q9H094 633 aa20.67■□□□□ 0.9
VPS9D1-203ENST00000563798 CWC22Q9HCG8 908 aaKnown RBP20.67■□□□□ 0.9
VPS9D1-203ENST00000563798 TTC41PQ6P2S7 1318 aa20.67■□□□□ 0.9
VPS9D1-203ENST00000563798 MYH8P13535 1937 aa20.66■□□□□ 0.9
VPS9D1-203ENST00000563798 GSG1L2A8MUP6 293 aa20.66■□□□□ 0.9
VPS9D1-203ENST00000563798 WDR46O15213 610 aaKnown RBP20.66■□□□□ 0.9
VPS9D1-203ENST00000563798 RNF113AO15541 343 aaKnown RBP20.66■□□□□ 0.9
VPS9D1-203ENST00000563798 LHX8Q68G74 356 aa20.66■□□□□ 0.9
VPS9D1-203ENST00000563798 CLEC10AQ8IUN9 316 aa20.66■□□□□ 0.9
VPS9D1-203ENST00000563798 MOV10L1Q9BXT6 1211 aaKnown RBP20.66■□□□□ 0.9
VPS9D1-203ENST00000563798 TANGO6Q9C0B7 1094 aa20.66■□□□□ 0.9
VPS9D1-203ENST00000563798 SPATC1LQ9H0A9 340 aa20.66■□□□□ 0.9
VPS9D1-203ENST00000563798 ADAMTS5Q9UNA0 930 aa20.66■□□□□ 0.9
VPS9D1-203ENST00000563798 IVNS1ABPQ9Y6Y0 642 aa20.66■□□□□ 0.9
VPS9D1-203ENST00000563798 ZNF236Q9UL36 1845 aa20.65■□□□□ 0.9
VPS9D1-203ENST00000563798 ROBO3Q96MS0 1386 aa20.65■□□□□ 0.9
VPS9D1-203ENST00000563798 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.65■□□□□ 0.9
VPS9D1-203ENST00000563798 FLRT1Q9NZU1 646 aa20.65■□□□□ 0.9
VPS9D1-203ENST00000563798 COL6A1P12109 1028 aa20.64■□□□□ 0.89
VPS9D1-203ENST00000563798 EEF2P13639 858 aaKnown RBP20.64■□□□□ 0.89
VPS9D1-203ENST00000563798 GNAT2P19087 354 aa20.64■□□□□ 0.89
VPS9D1-203ENST00000563798 CCND3P30281 292 aaPredicted RBP20.64■□□□□ 0.89
VPS9D1-203ENST00000563798 MFSD14CQ5VZR4 134 aa20.64■□□□□ 0.89
VPS9D1-203ENST00000563798 TSHZ3Q63HK5 1081 aa20.64■□□□□ 0.89
VPS9D1-203ENST00000563798 C11orf49Q9H6J7 331 aa20.64■□□□□ 0.89
VPS9D1-203ENST00000563798 RBM27Q9P2N5 1060 aaKnown RBP20.64■□□□□ 0.89
VPS9D1-203ENST00000563798 GREB1LQ9C091 1923 aaPredicted RBP20.63■□□□□ 0.89
VPS9D1-203ENST00000563798 ERC2O15083 957 aa20.63■□□□□ 0.89
VPS9D1-203ENST00000563798 FLOT1O75955 427 aa20.63■□□□□ 0.89
VPS9D1-203ENST00000563798 LRRFIP1Q32MZ4 808 aaKnown RBP20.63■□□□□ 0.89
VPS9D1-203ENST00000563798 WDR78Q5VTH9 848 aa20.63■□□□□ 0.89
VPS9D1-203ENST00000563798 ABRAQ8N0Z2 381 aa20.63■□□□□ 0.89
VPS9D1-203ENST00000563798 NPLOC4Q8TAT6 608 aa20.63■□□□□ 0.89
VPS9D1-203ENST00000563798 PI4K2BQ8TCG2 481 aa20.63■□□□□ 0.89
VPS9D1-203ENST00000563798 MROH8Q9H579 483 aa20.63■□□□□ 0.89
VPS9D1-203ENST00000563798 A0A1W2PPC1 479 aa20.62■□□□□ 0.89
VPS9D1-203ENST00000563798 GPAA1O43292 621 aa20.62■□□□□ 0.89
VPS9D1-203ENST00000563798 ERCC3P19447 782 aa20.62■□□□□ 0.89
VPS9D1-203ENST00000563798 RASA1P20936 1047 aa20.62■□□□□ 0.89
VPS9D1-203ENST00000563798 RRP1P56182 461 aaKnown RBP20.62■□□□□ 0.89
VPS9D1-203ENST00000563798 ATP2B2Q01814 1243 aa20.62■□□□□ 0.89
VPS9D1-203ENST00000563798 OLFML2BQ68BL8 750 aa20.62■□□□□ 0.89
VPS9D1-203ENST00000563798 SPICE1Q8N0Z3 855 aa20.62■□□□□ 0.89
VPS9D1-203ENST00000563798 ATG4CQ96DT6 458 aa20.62■□□□□ 0.89
VPS9D1-203ENST00000563798 ALPK3Q96L96 1907 aa20.62■□□□□ 0.89
VPS9D1-203ENST00000563798 RANBP2P49792 3224 aaKnown RBP20.62■□□□□ 0.89
VPS9D1-203ENST00000563798 TRIOBPQ9H2D6 2365 aa20.61■□□□□ 0.89
VPS9D1-203ENST00000563798 PFASO15067 1338 aa20.61■□□□□ 0.89
VPS9D1-203ENST00000563798 EPB41L4AQ9HCS5 686 aaPredicted RBP20.61■□□□□ 0.89
VPS9D1-203ENST00000563798 GOPCQ9HD26 462 aa20.61■□□□□ 0.89
VPS9D1-203ENST00000563798 NYAP2Q9P242 653 aa20.61■□□□□ 0.89
VPS9D1-203ENST00000563798 PARP14Q460N5 1801 aa20.61■□□□□ 0.89
VPS9D1-203ENST00000563798 SALL3Q9BXA9 1300 aa20.6■□□□□ 0.89
VPS9D1-203ENST00000563798 PATL2C9JE40 543 aaKnown RBP20.6■□□□□ 0.89
VPS9D1-203ENST00000563798 MSCO60682 206 aa20.6■□□□□ 0.89
VPS9D1-203ENST00000563798 ADORA2AP29274 412 aa20.6■□□□□ 0.89
VPS9D1-203ENST00000563798 IGKV6D-41A0A0C4DH26 115 aa20.59■□□□□ 0.89
VPS9D1-203ENST00000563798 M0R2C6 588 aa20.59■□□□□ 0.89
VPS9D1-203ENST00000563798 SLC25A27O95847 323 aa20.59■□□□□ 0.89
VPS9D1-203ENST00000563798 TMEM132BQ14DG7 1078 aa20.59■□□□□ 0.89
VPS9D1-203ENST00000563798 DPP9Q86TI2 863 aa20.59■□□□□ 0.89
VPS9D1-203ENST00000563798 OTUD7AQ8TE49 926 aaPredicted RBP20.59■□□□□ 0.89
VPS9D1-203ENST00000563798 ZNF287Q9HBT7 754 aa20.59■□□□□ 0.89
VPS9D1-203ENST00000563798 DDX20Q9UHI6 824 aaKnown RBP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms