RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 U2AF1L4Q8WU68 220 aaKnown RBP20.14■□□□□ 0.81
CLK3-210ENST00000563112 PORCNQ9H237 461 aa20.14■□□□□ 0.81
CLK3-210ENST00000563112 ZNF287Q9HBT7 754 aa20.14■□□□□ 0.81
CLK3-210ENST00000563112 SALL3Q9BXA9 1300 aa20.13■□□□□ 0.81
CLK3-210ENST00000563112 SPDYE16A6NNV3 312 aaPredicted RBP20.13■□□□□ 0.81
CLK3-210ENST00000563112 SGPL1O95470 568 aa20.13■□□□□ 0.81
CLK3-210ENST00000563112 WDR78Q5VTH9 848 aa20.13■□□□□ 0.81
CLK3-210ENST00000563112 CLEC10AQ8IUN9 316 aa20.13■□□□□ 0.81
CLK3-210ENST00000563112 TRMT44Q8IYL2 757 aaKnown RBP20.13■□□□□ 0.81
CLK3-210ENST00000563112 SHISA4Q96DD7 197 aa20.13■□□□□ 0.81
CLK3-210ENST00000563112 VCPKMTQ9H867 229 aa20.13■□□□□ 0.81
CLK3-210ENST00000563112 STAP2Q9UGK3 403 aa20.13■□□□□ 0.81
CLK3-210ENST00000563112 CNMDO75829 334 aa20.12■□□□□ 0.81
CLK3-210ENST00000563112 XRCC5P13010 732 aaKnown RBP20.12■□□□□ 0.81
CLK3-210ENST00000563112 EEF2P13639 858 aaKnown RBP20.12■□□□□ 0.81
CLK3-210ENST00000563112 RGS2P41220 211 aa20.12■□□□□ 0.81
CLK3-210ENST00000563112 ZMYM1Q5SVZ6 1142 aa20.12■□□□□ 0.81
CLK3-210ENST00000563112 POTEEQ6S8J3 1075 aa20.12■□□□□ 0.81
CLK3-210ENST00000563112 SIAH1Q8IUQ4 282 aa20.12■□□□□ 0.81
CLK3-210ENST00000563112 IFNL3Q8IZI9 196 aa20.12■□□□□ 0.81
CLK3-210ENST00000563112 STK11IPQ8N1F8 1099 aa20.12■□□□□ 0.81
CLK3-210ENST00000563112 EVI5LQ96CN4 794 aa20.12■□□□□ 0.81
CLK3-210ENST00000563112 DEFB118Q96PH6 123 aa20.12■□□□□ 0.81
CLK3-210ENST00000563112 WDR46O15213 610 aaKnown RBP20.11■□□□□ 0.81
CLK3-210ENST00000563112 TFRCP02786 760 aaKnown RBP20.11■□□□□ 0.81
CLK3-210ENST00000563112 PDE1AP54750 535 aa20.11■□□□□ 0.81
CLK3-210ENST00000563112 ZNF444Q8N0Y2 327 aaPredicted RBP20.11■□□□□ 0.81
CLK3-210ENST00000563112 SPICE1Q8N0Z3 855 aa20.11■□□□□ 0.81
CLK3-210ENST00000563112 SEC62Q99442 399 aaKnown RBP20.11■□□□□ 0.81
CLK3-210ENST00000563112 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.11■□□□□ 0.81
CLK3-210ENST00000563112 EPB41L4AQ9HCS5 686 aaPredicted RBP20.11■□□□□ 0.81
CLK3-210ENST00000563112 GOPCQ9HD26 462 aa20.11■□□□□ 0.81
CLK3-210ENST00000563112 HMX1Q9NP08 348 aaPredicted RBP20.11■□□□□ 0.81
CLK3-210ENST00000563112 BTBD7Q9P203 1132 aa20.11■□□□□ 0.81
CLK3-210ENST00000563112 IVNS1ABPQ9Y6Y0 642 aa20.11■□□□□ 0.81
CLK3-210ENST00000563112 ROBO3Q96MS0 1386 aa20.1■□□□□ 0.81
CLK3-210ENST00000563112 RPTORQ8N122 1335 aa20.1■□□□□ 0.81
CLK3-210ENST00000563112 FLOT1O75955 427 aa20.1■□□□□ 0.81
CLK3-210ENST00000563112 SLC3A2P08195 630 aaKnown RBP20.1■□□□□ 0.81
CLK3-210ENST00000563112 ZKSCAN1P17029 563 aaPredicted RBP20.1■□□□□ 0.81
CLK3-210ENST00000563112 RASA1P20936 1047 aa20.1■□□□□ 0.81
CLK3-210ENST00000563112 MORN1Q5T089 497 aa20.1■□□□□ 0.81
CLK3-210ENST00000563112 MB21D1Q8N884 522 aa20.1■□□□□ 0.81
CLK3-210ENST00000563112 NAPBQ9H115 298 aa20.1■□□□□ 0.81
CLK3-210ENST00000563112 PAK6Q9NQU5 681 aaPredicted RBP20.1■□□□□ 0.81
CLK3-210ENST00000563112 PLXNB2O15031 1838 aa20.09■□□□□ 0.81
CLK3-210ENST00000563112 SLC15A5A6NIM6 579 aa20.09■□□□□ 0.81
CLK3-210ENST00000563112 RAD21O60216 631 aa20.09■□□□□ 0.81
CLK3-210ENST00000563112 DSG3P32926 999 aa20.09■□□□□ 0.81
CLK3-210ENST00000563112 MAP2K5Q13163 448 aa20.09■□□□□ 0.81
CLK3-210ENST00000563112 KIAA1755Q5JYT7 1200 aa20.09■□□□□ 0.81
CLK3-210ENST00000563112 SMC5Q8IY18 1101 aa20.09■□□□□ 0.81
CLK3-210ENST00000563112 EXOC6Q8TAG9 804 aa20.09■□□□□ 0.81
CLK3-210ENST00000563112 TRIB2Q92519 343 aa20.09■□□□□ 0.81
CLK3-210ENST00000563112 USP6NLQ92738 828 aa20.09■□□□□ 0.81
CLK3-210ENST00000563112 LNPKQ9C0E8 428 aa20.09■□□□□ 0.81
CLK3-210ENST00000563112 FARP2O94887 1054 aaPredicted RBP20.08■□□□□ 0.81
CLK3-210ENST00000563112 PTPREP23469 700 aa20.08■□□□□ 0.81
CLK3-210ENST00000563112 PDE4BQ07343 736 aa20.08■□□□□ 0.81
CLK3-210ENST00000563112 B4GALNT3Q6L9W6 998 aa20.08■□□□□ 0.81
CLK3-210ENST00000563112 APBA2Q99767 749 aa20.08■□□□□ 0.81
CLK3-210ENST00000563112 HTATIP2Q9BUP3 242 aa20.08■□□□□ 0.81
CLK3-210ENST00000563112 CEP290O15078 2479 aa20.07■□□□□ 0.8
CLK3-210ENST00000563112 TRIM32Q13049 653 aa20.07■□□□□ 0.8
CLK3-210ENST00000563112 PLS1Q14651 629 aa20.07■□□□□ 0.8
CLK3-210ENST00000563112 SAMD1Q6SPF0 538 aaPredicted RBP20.07■□□□□ 0.8
CLK3-210ENST00000563112 TICAM2Q86XR7 235 aa20.07■□□□□ 0.8
CLK3-210ENST00000563112 DPF3Q92784 378 aa20.07■□□□□ 0.8
CLK3-210ENST00000563112 NYAP2Q9P242 653 aa20.07■□□□□ 0.8
CLK3-210ENST00000563112 BRCA2P51587 3418 aa20.07■□□□□ 0.8
CLK3-210ENST00000563112 STRNO43815 780 aa20.06■□□□□ 0.8
CLK3-210ENST00000563112 PRKAR2AP13861 404 aaKnown RBP20.06■□□□□ 0.8
CLK3-210ENST00000563112 SHCBP1Q8NEM2 672 aa20.06■□□□□ 0.8
CLK3-210ENST00000563112 ATG4CQ96DT6 458 aa20.06■□□□□ 0.8
CLK3-210ENST00000563112 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.06■□□□□ 0.8
CLK3-210ENST00000563112 MOV10L1Q9BXT6 1211 aaKnown RBP20.06■□□□□ 0.8
CLK3-210ENST00000563112 SPATC1LQ9H0A9 340 aa20.06■□□□□ 0.8
CLK3-210ENST00000563112 CRISPLD2Q9H0B8 497 aa20.06■□□□□ 0.8
CLK3-210ENST00000563112 HELLSQ9NRZ9 838 aa20.06■□□□□ 0.8
CLK3-210ENST00000563112 SUPT16HQ9Y5B9 1047 aaKnown RBP20.06■□□□□ 0.8
CLK3-210ENST00000563112 TRIM6-TRIM34B2RNG4 842 aa20.05■□□□□ 0.8
CLK3-210ENST00000563112 PRDM1O75626 825 aa20.05■□□□□ 0.8
CLK3-210ENST00000563112 PPARAQ07869 468 aa20.05■□□□□ 0.8
CLK3-210ENST00000563112 CCDC129Q6ZRS4 1044 aa20.05■□□□□ 0.8
CLK3-210ENST00000563112 CHD1LQ86WJ1 897 aa20.05■□□□□ 0.8
CLK3-210ENST00000563112 CLIP2Q9UDT6 1046 aa20.05■□□□□ 0.8
CLK3-210ENST00000563112 MKI67P46013 3256 aaKnown RBP20.05■□□□□ 0.8
CLK3-210ENST00000563112 TSPY3P0CV98 308 aa20.04■□□□□ 0.8
CLK3-210ENST00000563112 TSPY8P0CW00 308 aa20.04■□□□□ 0.8
CLK3-210ENST00000563112 GRB14Q14449 540 aa20.04■□□□□ 0.8
CLK3-210ENST00000563112 CCL14Q16627 93 aa20.04■□□□□ 0.8
CLK3-210ENST00000563112 FAM83BQ5T0W9 1011 aa20.04■□□□□ 0.8
CLK3-210ENST00000563112 MAP3K21Q5TCX8 1036 aa20.04■□□□□ 0.8
CLK3-210ENST00000563112 MFSD14CQ5VZR4 134 aa20.04■□□□□ 0.8
CLK3-210ENST00000563112 UBE2Q1Q7Z7E8 422 aa20.04■□□□□ 0.8
CLK3-210ENST00000563112 DPP9Q86TI2 863 aa20.04■□□□□ 0.8
CLK3-210ENST00000563112 MROH8Q9H579 483 aa20.04■□□□□ 0.8
CLK3-210ENST00000563112 RLFQ13129 1914 aa20.04■□□□□ 0.8
CLK3-210ENST00000563112 F5H6K3 240 aa20.03■□□□□ 0.8
CLK3-210ENST00000563112 IGHDP01880 384 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms