RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 CBX7O95931 251 aa7.38□□□□□ -1.23
VPS13C-210ENST00000561258 CDK8P49336 464 aa7.38□□□□□ -1.23
VPS13C-210ENST00000561258 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-210ENST00000561258 C22orf34Q6ZV56 151 aa7.38□□□□□ -1.23
VPS13C-210ENST00000561258 FBXO15Q8NCQ5 510 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-210ENST00000561258 TMEM74Q96NL1 305 aa7.38□□□□□ -1.23
VPS13C-210ENST00000561258 KCNQ5Q9NR82 932 aa7.38□□□□□ -1.23
VPS13C-210ENST00000561258 CYP8B1Q9UNU6 501 aa7.38□□□□□ -1.23
VPS13C-210ENST00000561258 NFIBO00712 420 aa7.37□□□□□ -1.23
VPS13C-210ENST00000561258 SV2BQ7L1I2 683 aa7.37□□□□□ -1.23
VPS13C-210ENST00000561258 RELL1Q8IUW5 271 aa7.37□□□□□ -1.23
VPS13C-210ENST00000561258 XAGE3Q8WTP9 111 aa7.37□□□□□ -1.23
VPS13C-210ENST00000561258 UBE2FQ969M7 185 aa7.37□□□□□ -1.23
VPS13C-210ENST00000561258 RHOVQ96L33 236 aa7.37□□□□□ -1.23
VPS13C-210ENST00000561258 WNT10AQ9GZT5 417 aa7.37□□□□□ -1.23
VPS13C-210ENST00000561258 F6X3S4 739 aa7.36□□□□□ -1.23
VPS13C-210ENST00000561258 GBP2P32456 591 aaPredicted RBP7.36□□□□□ -1.23
VPS13C-210ENST00000561258 EIF4A3P38919 411 aaKnown RBP7.36□□□□□ -1.23
VPS13C-210ENST00000561258 SERINC3Q13530 473 aa7.36□□□□□ -1.23
VPS13C-210ENST00000561258 SCARA3Q6AZY7 606 aa7.36□□□□□ -1.23
VPS13C-210ENST00000561258 LETMD1Q6P1Q0 360 aa7.36□□□□□ -1.23
VPS13C-210ENST00000561258 LILRA6Q6PI73 481 aa7.36□□□□□ -1.23
VPS13C-210ENST00000561258 HDXQ7Z353 690 aa7.36□□□□□ -1.23
VPS13C-210ENST00000561258 SIAH1Q8IUQ4 282 aa7.36□□□□□ -1.23
VPS13C-210ENST00000561258 EAF1Q96JC9 268 aaPredicted RBP7.36□□□□□ -1.23
VPS13C-210ENST00000561258 ALPK1Q96QP1 1244 aa7.36□□□□□ -1.23
VPS13C-210ENST00000561258 SLAMF8Q9P0V8 285 aa7.36□□□□□ -1.23
VPS13C-210ENST00000561258 ZSWIM5Q9P217 1185 aa7.36□□□□□ -1.23
VPS13C-210ENST00000561258 ANKRD62A6NC57 917 aa7.35□□□□□ -1.23
VPS13C-210ENST00000561258 MINDY4BA8MYZ0 360 aa7.35□□□□□ -1.23
VPS13C-210ENST00000561258 NPIPB6E9PJ23 425 aa7.35□□□□□ -1.23
VPS13C-210ENST00000561258 RLBP1P12271 317 aa7.35□□□□□ -1.23
VPS13C-210ENST00000561258 NCLP19338 710 aaKnown RBP7.35□□□□□ -1.23
VPS13C-210ENST00000561258 GARTP22102 1010 aa7.35□□□□□ -1.23
VPS13C-210ENST00000561258 NASPP49321 788 aaPredicted RBP7.35□□□□□ -1.23
VPS13C-210ENST00000561258 ETF1P62495 437 aaKnown RBP7.35□□□□□ -1.23
VPS13C-210ENST00000561258 WIPI1Q5MNZ9 446 aaPredicted RBP7.35□□□□□ -1.23
VPS13C-210ENST00000561258 NBPF6Q5VWK0 638 aa7.35□□□□□ -1.23
VPS13C-210ENST00000561258 SDE2Q6IQ49 451 aa7.35□□□□□ -1.23
VPS13C-210ENST00000561258 ZNF746Q6NUN9 644 aaPredicted RBP7.35□□□□□ -1.23
VPS13C-210ENST00000561258 TTC6Q86TZ1 520 aa7.35□□□□□ -1.23
VPS13C-210ENST00000561258 NLGN1Q8N2Q7 840 aa7.35□□□□□ -1.23
VPS13C-210ENST00000561258 MFSD2AQ8NA29 543 aa7.35□□□□□ -1.23
VPS13C-210ENST00000561258 PHC3Q8NDX5 983 aa7.35□□□□□ -1.23
VPS13C-210ENST00000561258 ZNF296Q8WUU4 475 aaPredicted RBP7.35□□□□□ -1.23
VPS13C-210ENST00000561258 GAL3ST3Q96A11 431 aa7.35□□□□□ -1.23
VPS13C-210ENST00000561258 NBPF4Q96M43 638 aa7.35□□□□□ -1.23
VPS13C-210ENST00000561258 DNAJC25-GNG10A0A024R161 153 aa7.34□□□□□ -1.23
VPS13C-210ENST00000561258 PPM1GO15355 546 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-210ENST00000561258 CAP2P40123 477 aa7.34□□□□□ -1.23
VPS13C-210ENST00000561258 SOX9P48436 509 aa7.34□□□□□ -1.23
VPS13C-210ENST00000561258 ERVFC1P60507 584 aa7.34□□□□□ -1.23
VPS13C-210ENST00000561258 BMS1Q14692 1282 aaKnown RBP7.34□□□□□ -1.23
VPS13C-210ENST00000561258 RALGPS1Q5JS13 557 aa7.34□□□□□ -1.23
VPS13C-210ENST00000561258 PRAMEF13Q5VWM6 474 aa7.34□□□□□ -1.23
VPS13C-210ENST00000561258 ZNF662Q6ZS27 426 aa7.34□□□□□ -1.23
VPS13C-210ENST00000561258 CDH24Q86UP0 819 aa7.34□□□□□ -1.23
VPS13C-210ENST00000561258 CKAP2LQ8IYA6 745 aa7.34□□□□□ -1.23
VPS13C-210ENST00000561258 NT5C1AQ9BXI3 368 aa7.34□□□□□ -1.23
VPS13C-210ENST00000561258 ZNF408Q9H9D4 720 aa7.34□□□□□ -1.23
VPS13C-210ENST00000561258 DCP1AQ9NPI6 582 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-210ENST00000561258 GINM1Q9NU53 330 aa7.34□□□□□ -1.23
VPS13C-210ENST00000561258 EFR3BQ9Y2G0 817 aa7.34□□□□□ -1.23
VPS13C-210ENST00000561258 GREM1O60565 184 aa7.33□□□□□ -1.24
VPS13C-210ENST00000561258 SSBP05455 408 aaKnown RBP eCLIP7.33□□□□□ -1.24
VPS13C-210ENST00000561258 TMEM253P0C7T8 217 aa7.33□□□□□ -1.24
VPS13C-210ENST00000561258 LIG3P49916 1009 aa7.33□□□□□ -1.24
VPS13C-210ENST00000561258 TNK2Q07912 1038 aa7.33□□□□□ -1.24
VPS13C-210ENST00000561258 MAP3K11Q16584 847 aa7.33□□□□□ -1.24
VPS13C-210ENST00000561258 FBXL19Q6PCT2 694 aa7.33□□□□□ -1.24
VPS13C-210ENST00000561258 THAP5Q7Z6K1 395 aa7.33□□□□□ -1.24
VPS13C-210ENST00000561258 JAZF1Q86VZ6 243 aa7.33□□□□□ -1.24
VPS13C-210ENST00000561258 HID1Q8IV36 788 aa7.33□□□□□ -1.24
VPS13C-210ENST00000561258 ABHD4Q8TB40 342 aa7.33□□□□□ -1.24
VPS13C-210ENST00000561258 STRIP2Q9ULQ0 834 aa7.33□□□□□ -1.24
VPS13C-210ENST00000561258 WASH4PA8MWX3 477 aa7.32□□□□□ -1.24
VPS13C-210ENST00000561258 CST3P01034 146 aaPredicted RBP7.32□□□□□ -1.24
VPS13C-210ENST00000561258 GRK4P32298 578 aa7.32□□□□□ -1.24
VPS13C-210ENST00000561258 NFE2L2Q16236 605 aa7.32□□□□□ -1.24
VPS13C-210ENST00000561258 ATG14Q6ZNE5 492 aa7.32□□□□□ -1.24
VPS13C-210ENST00000561258 CCDC120Q96HB5 630 aa7.32□□□□□ -1.24
VPS13C-210ENST00000561258 EPB41L4BQ9H329 900 aa7.32□□□□□ -1.24
VPS13C-210ENST00000561258 SUPT16HQ9Y5B9 1047 aaKnown RBP7.32□□□□□ -1.24
VPS13C-210ENST00000561258 SNCAIPQ9Y6H5 919 aa7.32□□□□□ -1.24
VPS13C-210ENST00000561258 ESR1P03372 595 aa7.31□□□□□ -1.24
VPS13C-210ENST00000561258 HK2P52789 917 aa7.31□□□□□ -1.24
VPS13C-210ENST00000561258 LMNB2Q03252 620 aa7.31□□□□□ -1.24
VPS13C-210ENST00000561258 FAM160A1Q05DH4 1040 aa7.31□□□□□ -1.24
VPS13C-210ENST00000561258 COL9A2Q14055 689 aaPredicted RBP7.31□□□□□ -1.24
VPS13C-210ENST00000561258 KCNA10Q16322 511 aa7.31□□□□□ -1.24
VPS13C-210ENST00000561258 EGFLAMQ63HQ2 1017 aa7.31□□□□□ -1.24
VPS13C-210ENST00000561258 TTLL10Q6ZVT0 673 aa7.31□□□□□ -1.24
VPS13C-210ENST00000561258 CD320Q9NPF0 282 aa7.31□□□□□ -1.24
VPS13C-210ENST00000561258 TLR6Q9Y2C9 796 aa7.31□□□□□ -1.24
VPS13C-210ENST00000561258 ETV2O00321 342 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-210ENST00000561258 PF4P02776 101 aa7.3□□□□□ -1.24
VPS13C-210ENST00000561258 RAC2P15153 192 aa7.3□□□□□ -1.24
VPS13C-210ENST00000561258 ETFBP38117 255 aa7.3□□□□□ -1.24
VPS13C-210ENST00000561258 CAMK2GQ13555 558 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-210ENST00000561258 AGMOQ6ZNB7 445 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms