RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-222ENST00000560131 ATP11AP98196 1134 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 CLCQ05315 142 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 FAM182BQ5T319 152 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 RASIP1Q5U651 963 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 SCARA3Q6AZY7 606 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 SASS6Q6UVJ0 657 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 GK5Q6ZS86 529 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 HFE2Q6ZVN8 426 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 RAB44Q7Z6P3 723 aaPredicted RBP6.36□□□□□ -1.39
TPM1-222ENST00000560131 GAS2L3Q86XJ1 694 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 WDR63Q8IWG1 891 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 TNPO1Q92973 898 aaKnown RBP6.36□□□□□ -1.39
TPM1-222ENST00000560131 ABHD17AQ96GS6 310 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 CCDC94Q9BW85 323 aaPredicted RBP6.36□□□□□ -1.39
TPM1-222ENST00000560131 EMILIN2Q9BXX0 1053 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 EHMT1Q9H9B1 1298 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 ATXN7L1Q9ULK2 861 aaPredicted RBP6.36□□□□□ -1.39
TPM1-222ENST00000560131 KNSTRNQ9Y448 316 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 CEP152O94986 1710 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 CLTCL1P53675 1640 aa6.36□□□□□ -1.39
TPM1-222ENST00000560131 SCAF11Q99590 1463 aaKnown RBP6.35□□□□□ -1.39
TPM1-222ENST00000560131 TDRD9Q8NDG6 1382 aaKnown RBP6.35□□□□□ -1.39
TPM1-222ENST00000560131 COBLO75128 1261 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 BCAR3O75815 825 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 SMNDC1O75940 238 aaKnown RBP eCLIP6.35□□□□□ -1.39
TPM1-222ENST00000560131 B3GALT4O96024 378 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 MLLT1Q03111 559 aaPredicted RBP6.35□□□□□ -1.39
TPM1-222ENST00000560131 PCDH1Q08174 1060 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 SEPT6Q14141 434 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 ZNF423Q2M1K9 1284 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 NKAPLQ5M9Q1 402 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 CC2D1BQ5T0F9 858 aaKnown RBP6.35□□□□□ -1.39
TPM1-222ENST00000560131 CEP135Q66GS9 1140 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 LLGL2Q6P1M3 1020 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 KIAA0907Q7Z7F0 614 aaPredicted RBP6.35□□□□□ -1.39
TPM1-222ENST00000560131 BTBD6Q96KE9 485 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 CHMP4AQ9BY43 222 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 TNKS2Q9H2K2 1166 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 TMEM260Q9NX78 707 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 PHF24Q9UPV7 400 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 MAPK8IP1Q9UQF2 711 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 ZKSCAN5Q9Y2L8 839 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 MYO3AQ8NEV4 1616 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 ADGRB2O60241 1585 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 ABCA8O94911 1581 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 CFAP74Q9C0B2 1584 aa6.35□□□□□ -1.39
TPM1-222ENST00000560131 IFT140Q96RY7 1462 aa6.34□□□□□ -1.39
TPM1-222ENST00000560131 PDS5BQ9NTI5 1447 aa6.34□□□□□ -1.39
TPM1-222ENST00000560131 TRIM37O94972 964 aa6.34□□□□□ -1.39
TPM1-222ENST00000560131 LETM1O95202 739 aaPredicted RBP6.34□□□□□ -1.39
TPM1-222ENST00000560131 ATE1O95260 518 aa6.34□□□□□ -1.39
TPM1-222ENST00000560131 RARSP54136 660 aaKnown RBP6.34□□□□□ -1.39
TPM1-222ENST00000560131 GYS2P54840 703 aa6.34□□□□□ -1.39
TPM1-222ENST00000560131 RPL6Q02878 288 aaKnown RBP6.34□□□□□ -1.39
TPM1-222ENST00000560131 LARP1BQ659C4 914 aaKnown RBP6.34□□□□□ -1.39
TPM1-222ENST00000560131 C16orf86Q6ZW13 317 aa6.34□□□□□ -1.39
TPM1-222ENST00000560131 LSRQ86X29 649 aaPredicted RBP6.34□□□□□ -1.39
TPM1-222ENST00000560131 SULF2Q8IWU5 870 aa6.34□□□□□ -1.39
TPM1-222ENST00000560131 GRIN3AQ8TCU5 1115 aa6.34□□□□□ -1.39
TPM1-222ENST00000560131 CBX8Q9HC52 389 aa6.34□□□□□ -1.39
TPM1-222ENST00000560131 PRG4Q92954 1404 aaPredicted RBP6.33□□□□□ -1.4
TPM1-222ENST00000560131 PREX2Q70Z35 1606 aa6.33□□□□□ -1.4
TPM1-222ENST00000560131 FGFR3P22607 806 aa6.33□□□□□ -1.4
TPM1-222ENST00000560131 TNNT2P45379 298 aaPredicted RBP6.33□□□□□ -1.4
TPM1-222ENST00000560131 HMGN5P82970 282 aaKnown RBP6.33□□□□□ -1.4
TPM1-222ENST00000560131 PPP2R5EQ16537 467 aa6.33□□□□□ -1.4
TPM1-222ENST00000560131 TAF7LQ5H9L4 462 aa6.33□□□□□ -1.4
TPM1-222ENST00000560131 NOL8Q76FK4 1167 aaKnown RBP6.33□□□□□ -1.4
TPM1-222ENST00000560131 VN1R5Q7Z5H4 357 aa6.33□□□□□ -1.4
TPM1-222ENST00000560131 JMYQ8N9B5 988 aa6.33□□□□□ -1.4
TPM1-222ENST00000560131 DDX54Q8TDD1 881 aaKnown RBP6.33□□□□□ -1.4
TPM1-222ENST00000560131 STK35Q8TDR2 534 aa6.33□□□□□ -1.4
TPM1-222ENST00000560131 THAP3Q8WTV1 239 aaPredicted RBP6.33□□□□□ -1.4
TPM1-222ENST00000560131 ADAM19Q9H013 955 aa6.33□□□□□ -1.4
TPM1-222ENST00000560131 IGFLR1Q9H665 355 aa6.33□□□□□ -1.4
TPM1-222ENST00000560131 DNAJB12Q9NXW2 375 aaKnown RBP6.33□□□□□ -1.4
TPM1-222ENST00000560131 CCDC39Q9UFE4 941 aa6.33□□□□□ -1.4
TPM1-222ENST00000560131 PRR12Q9ULL5 1215 aa6.33□□□□□ -1.4
TPM1-222ENST00000560131 SOX13Q9UN79 622 aa6.33□□□□□ -1.4
TPM1-222ENST00000560131 PCDHB14Q9Y5E9 798 aa6.33□□□□□ -1.4
TPM1-222ENST00000560131 UQCRHLA0A096LP55 91 aa6.32□□□□□ -1.4
TPM1-222ENST00000560131 APAF1O14727 1248 aa6.32□□□□□ -1.4
TPM1-222ENST00000560131 GJB6O95452 261 aa6.32□□□□□ -1.4
TPM1-222ENST00000560131 UQCRHP07919 91 aa6.32□□□□□ -1.4
TPM1-222ENST00000560131 ZSCAN20P17040 1043 aaPredicted RBP6.32□□□□□ -1.4
TPM1-222ENST00000560131 PTPRAP18433 802 aa6.32□□□□□ -1.4
TPM1-222ENST00000560131 EIF2AK2P19525 551 aaKnown RBP6.32□□□□□ -1.4
TPM1-222ENST00000560131 NUCB2P80303 420 aa6.32□□□□□ -1.4
TPM1-222ENST00000560131 ZNF252P-AS1Q0IIN9 211 aa6.32□□□□□ -1.4
TPM1-222ENST00000560131 SQSTM1Q13501 440 aa6.32□□□□□ -1.4
TPM1-222ENST00000560131 CNGB1Q14028 1251 aaPredicted RBP6.32□□□□□ -1.4
TPM1-222ENST00000560131 MVPQ14764 893 aaKnown RBP6.32□□□□□ -1.4
TPM1-222ENST00000560131 LRRFIP1Q32MZ4 808 aaKnown RBP6.32□□□□□ -1.4
TPM1-222ENST00000560131 MTERF2Q49AM1 385 aa6.32□□□□□ -1.4
TPM1-222ENST00000560131 C2orf27AQ580R0 203 aa6.32□□□□□ -1.4
TPM1-222ENST00000560131 SLCO4C1Q6ZQN7 724 aa6.32□□□□□ -1.4
TPM1-222ENST00000560131 MICALL1Q8N3F8 863 aa6.32□□□□□ -1.4
TPM1-222ENST00000560131 C19orf47Q8N9M1 422 aaKnown RBP6.32□□□□□ -1.4
TPM1-222ENST00000560131 MYRIPQ8NFW9 859 aa6.32□□□□□ -1.4
TPM1-222ENST00000560131 GAL3ST3Q96A11 431 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms