RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 IFIT3O14879 490 aaKnown RBP11.83□□□□□ -0.52
USP3-216ENST00000559873 WDR46O15213 610 aaKnown RBP11.83□□□□□ -0.52
USP3-216ENST00000559873 PRC1O43663 620 aa11.83□□□□□ -0.52
USP3-216ENST00000559873 VCAM1P19320 739 aa11.83□□□□□ -0.52
USP3-216ENST00000559873 FGD1P98174 961 aa11.83□□□□□ -0.52
USP3-216ENST00000559873 IFIT1BQ5T764 474 aaKnown RBP11.83□□□□□ -0.52
USP3-216ENST00000559873 BLOC1S2Q6QNY1 142 aa11.83□□□□□ -0.52
USP3-216ENST00000559873 IFNL1Q8IU54 200 aa11.83□□□□□ -0.52
USP3-216ENST00000559873 RASEFQ8IZ41 740 aa11.83□□□□□ -0.52
USP3-216ENST00000559873 LRRC47Q8N1G4 583 aaKnown RBP11.83□□□□□ -0.52
USP3-216ENST00000559873 DNAJC5GQ8N7S2 189 aa11.83□□□□□ -0.52
USP3-216ENST00000559873 GMCL1P1Q8NEA9 526 aa11.83□□□□□ -0.52
USP3-216ENST00000559873 ACER1Q8TDN7 264 aa11.83□□□□□ -0.52
USP3-216ENST00000559873 JAKMIP1Q96N16 626 aaKnown RBP11.83□□□□□ -0.52
USP3-216ENST00000559873 IL17RBQ9NRM6 502 aa11.83□□□□□ -0.52
USP3-216ENST00000559873 SAGE1Q9NXZ1 904 aa11.83□□□□□ -0.52
USP3-216ENST00000559873 ZSWIM5Q9P217 1185 aa11.83□□□□□ -0.52
USP3-216ENST00000559873 SNX14Q9Y5W7 946 aa11.83□□□□□ -0.52
USP3-216ENST00000559873 A0A1W2PRG0 241 aa11.82□□□□□ -0.52
USP3-216ENST00000559873 NMT2O60551 498 aa11.82□□□□□ -0.52
USP3-216ENST00000559873 OSBPP22059 807 aa11.82□□□□□ -0.52
USP3-216ENST00000559873 NOVP48745 357 aa11.82□□□□□ -0.52
USP3-216ENST00000559873 IRX3P78415 501 aaPredicted RBP11.82□□□□□ -0.52
USP3-216ENST00000559873 WTAPQ15007 396 aa11.82□□□□□ -0.52
USP3-216ENST00000559873 TAF1CQ15572 869 aaPredicted RBP11.82□□□□□ -0.52
USP3-216ENST00000559873 TMEM67Q5HYA8 995 aa11.82□□□□□ -0.52
USP3-216ENST00000559873 DHX32Q7L7V1 743 aaKnown RBP11.82□□□□□ -0.52
USP3-216ENST00000559873 TMTC2Q8N394 836 aa11.82□□□□□ -0.52
USP3-216ENST00000559873 ENAHQ8N8S7 591 aaPredicted RBP11.82□□□□□ -0.52
USP3-216ENST00000559873 GTF3C2Q8WUA4 911 aaPredicted RBP11.82□□□□□ -0.52
USP3-216ENST00000559873 ZKSCAN3Q9BRR0 538 aa11.82□□□□□ -0.52
USP3-216ENST00000559873 TM6SF1Q9BZW5 370 aa11.82□□□□□ -0.52
USP3-216ENST00000559873 TANGO6Q9C0B7 1094 aa11.82□□□□□ -0.52
USP3-216ENST00000559873 ISY1Q9ULR0 285 aaKnown RBP11.82□□□□□ -0.52
USP3-216ENST00000559873 TAF6LQ9Y6J9 622 aa11.82□□□□□ -0.52
USP3-216ENST00000559873 USP17L15C9J2P7 530 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 BTBD19C9JJ37 291 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 USP17L13C9JLJ4 530 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 USP17L11C9JVI0 530 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 USP17L18D6R9N7 530 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 USP17L22D6RA61 530 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 USP17L17D6RBQ6 530 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 USP17L19D6RCP7 530 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 USP17L20D6RJB6 530 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 PDHXO00330 501 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 IGF2BP3O00425 579 aaKnown RBP eCLIP11.81□□□□□ -0.52
USP3-216ENST00000559873 CASTP20810 708 aaKnown RBP11.81□□□□□ -0.52
USP3-216ENST00000559873 SLC1A4P43007 532 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 USP17L24Q0WX57 530 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 SLFN13Q68D06 897 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 NFXL1Q6ZNB6 911 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 CYB5R4Q7L1T6 521 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 FAM43AQ8N2R8 423 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 JMYQ8N9B5 988 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 PNMA1Q8ND90 353 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 SMCR8Q8TEV9 937 aaPredicted RBP11.81□□□□□ -0.52
USP3-216ENST00000559873 DCAF4Q8WV16 495 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 ANKS1AQ92625 1134 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 GMCL1Q96IK5 515 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 ZIC5Q96T25 663 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 TMEM47Q9BQJ4 181 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 C22orf23Q9BZE7 217 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 ZFYVE28Q9HCC9 887 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 EMILIN3Q9NT22 766 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 CYP46A1Q9Y6A2 500 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 MYH4Q9Y623 1939 aa11.81□□□□□ -0.52
USP3-216ENST00000559873 CCDC69A6NI79 296 aa11.8□□□□□ -0.52
USP3-216ENST00000559873 F5H6K3 240 aa11.8□□□□□ -0.52
USP3-216ENST00000559873 NDUFB10O96000 172 aa11.8□□□□□ -0.52
USP3-216ENST00000559873 HOXA7P31268 230 aaPredicted RBP11.8□□□□□ -0.52
USP3-216ENST00000559873 ANTXR2P58335 489 aa11.8□□□□□ -0.52
USP3-216ENST00000559873 KLRC3Q07444 240 aa11.8□□□□□ -0.52
USP3-216ENST00000559873 MOGSQ13724 837 aa11.8□□□□□ -0.52
USP3-216ENST00000559873 CCDC96Q2M329 555 aa11.8□□□□□ -0.52
USP3-216ENST00000559873 ADCK5Q3MIX3 580 aa11.8□□□□□ -0.52
USP3-216ENST00000559873 TREML2Q5T2D2 321 aa11.8□□□□□ -0.52
USP3-216ENST00000559873 SIAH1Q8IUQ4 282 aa11.8□□□□□ -0.52
USP3-216ENST00000559873 SPICE1Q8N0Z3 855 aa11.8□□□□□ -0.52
USP3-216ENST00000559873 RPAP3Q9H6T3 665 aaPredicted RBP11.8□□□□□ -0.52
USP3-216ENST00000559873 MYPNQ86TC9 1320 aa11.8□□□□□ -0.52
USP3-216ENST00000559873 SH2B2O14492 632 aaPredicted RBP11.79□□□□□ -0.52
USP3-216ENST00000559873 FLOT1O75955 427 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 DDAH1O94760 285 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 SEC24BO95487 1268 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 BMP3P12645 472 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 RPS6KB1P23443 525 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 LIFRP42702 1097 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 GCLCP48506 637 aaPredicted RBP11.79□□□□□ -0.52
USP3-216ENST00000559873 IKQ13123 557 aaPredicted RBP11.79□□□□□ -0.52
USP3-216ENST00000559873 DGKZQ13574 1117 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 SEC23AQ15436 765 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 GPATCH4Q5T3I0 446 aaKnown RBP11.79□□□□□ -0.52
USP3-216ENST00000559873 RCSD1Q6JBY9 416 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 GPAT2Q6NUI2 795 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 SYNE3Q6ZMZ3 975 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 RUFY3Q7L099 469 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 CHST3Q7LGC8 479 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 CATIPQ7Z7H3 387 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 IL27Q8NEV9 243 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 PTPN18Q99952 460 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms