RNA–Protein interactions for RNA: ENST00000559061.5

SNX1-204, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-204ENST00000559061 ALDH1A1P00352 501 aa13.54□□□□□ -0.24
SNX1-204ENST00000559061 TSPY3P0CV98 308 aa13.54□□□□□ -0.24
SNX1-204ENST00000559061 TSPY8P0CW00 308 aa13.54□□□□□ -0.24
SNX1-204ENST00000559061 BCRP11274 1271 aa13.54□□□□□ -0.24
SNX1-204ENST00000559061 PCP11498 1178 aaKnown RBP13.54□□□□□ -0.24
SNX1-204ENST00000559061 CTCFP49711 727 aaPredicted RBP13.54□□□□□ -0.24
SNX1-204ENST00000559061 NOM1Q5C9Z4 860 aaKnown RBP13.54□□□□□ -0.24
SNX1-204ENST00000559061 C17orf99Q6UX52 265 aa13.54□□□□□ -0.24
SNX1-204ENST00000559061 MB21D2Q8IYB1 491 aaPredicted RBP13.54□□□□□ -0.24
SNX1-204ENST00000559061 SPICE1Q8N0Z3 855 aa13.54□□□□□ -0.24
SNX1-204ENST00000559061 ZNF296Q8WUU4 475 aaPredicted RBP13.54□□□□□ -0.24
SNX1-204ENST00000559061 KCNB2Q92953 911 aa13.54□□□□□ -0.24
SNX1-204ENST00000559061 FEZ1Q99689 392 aa13.54□□□□□ -0.24
SNX1-204ENST00000559061 ASCC2Q9H1I8 757 aaPredicted RBP13.54□□□□□ -0.24
SNX1-204ENST00000559061 TCP11L1Q9NUJ3 509 aa13.54□□□□□ -0.24
SNX1-204ENST00000559061 ZSWIM5Q9P217 1185 aa13.54□□□□□ -0.24
SNX1-204ENST00000559061 TSPY2A6NKD2 308 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 TLR2O60603 784 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 CNMDO75829 334 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 TTLL1O95922 423 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 NDUFB10O96000 172 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 HOXD11P31277 338 aaPredicted RBP13.53□□□□□ -0.24
SNX1-204ENST00000559061 SEC23AQ15436 765 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 CATSPERGQ6ZRH7 1159 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 NUP88Q99567 741 aaPredicted RBP13.53□□□□□ -0.24
SNX1-204ENST00000559061 ZKSCAN3Q9BRR0 538 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 RPAP3Q9H6T3 665 aaPredicted RBP13.53□□□□□ -0.24
SNX1-204ENST00000559061 ZNF287Q9HBT7 754 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 SENP2Q9HC62 589 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 ARHGEF10LQ9HCE6 1279 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 TXNRD2Q9NNW7 524 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 CLIP2Q9UDT6 1046 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 CPA4Q9UI42 421 aa13.53□□□□□ -0.24
SNX1-204ENST00000559061 SEC24BO95487 1268 aa13.52□□□□□ -0.25
SNX1-204ENST00000559061 USP14P54578 494 aa13.52□□□□□ -0.25
SNX1-204ENST00000559061 ATP2B2Q01814 1243 aa13.52□□□□□ -0.25
SNX1-204ENST00000559061 ADCK5Q3MIX3 580 aa13.52□□□□□ -0.25
SNX1-204ENST00000559061 C8orf34Q49A92 452 aa13.52□□□□□ -0.25
SNX1-204ENST00000559061 PPP4R3CPQ6ZMV5 832 aa13.52□□□□□ -0.25
SNX1-204ENST00000559061 ENAHQ8N8S7 591 aaPredicted RBP13.52□□□□□ -0.25
SNX1-204ENST00000559061 GMCL1P1Q8NEA9 526 aa13.52□□□□□ -0.25
SNX1-204ENST00000559061 PARK7Q99497 189 aaKnown RBP13.52□□□□□ -0.25
SNX1-204ENST00000559061 P2RX7Q99572 595 aaKnown RBP13.52□□□□□ -0.25
SNX1-204ENST00000559061 TMEM47Q9BQJ4 181 aa13.52□□□□□ -0.25
SNX1-204ENST00000559061 BEGAINQ9BUH8 593 aa13.52□□□□□ -0.25
SNX1-204ENST00000559061 ARHGAP39Q9C0H5 1083 aa13.52□□□□□ -0.25
SNX1-204ENST00000559061 RNF41Q9H4P4 317 aaPredicted RBP13.52□□□□□ -0.25
SNX1-204ENST00000559061 GPHNQ9NQX3 736 aaPredicted RBP13.52□□□□□ -0.25
SNX1-204ENST00000559061 FBXO28Q9NVF7 368 aa13.52□□□□□ -0.25
SNX1-204ENST00000559061 TMOD4Q9NZQ9 345 aa13.52□□□□□ -0.25
SNX1-204ENST00000559061 DOCK3Q8IZD9 2030 aa13.51□□□□□ -0.25
SNX1-204ENST00000559061 SPDYE16A6NNV3 312 aaPredicted RBP13.51□□□□□ -0.25
SNX1-204ENST00000559061 F5H6K3 240 aa13.51□□□□□ -0.25
SNX1-204ENST00000559061 HSPA4P34932 840 aa13.51□□□□□ -0.25
SNX1-204ENST00000559061 KLRC3Q07444 240 aa13.51□□□□□ -0.25
SNX1-204ENST00000559061 FAM83BQ5T0W9 1011 aa13.51□□□□□ -0.25
SNX1-204ENST00000559061 OTUD7BQ6GQQ9 843 aa13.51□□□□□ -0.25
SNX1-204ENST00000559061 ANKS1AQ92625 1134 aa13.51□□□□□ -0.25
SNX1-204ENST00000559061 LPAR1Q92633 364 aa13.51□□□□□ -0.25
SNX1-204ENST00000559061 ZFYVE28Q9HCC9 887 aa13.51□□□□□ -0.25
SNX1-204ENST00000559061 PRDM10Q9NQV6 1147 aa13.51□□□□□ -0.25
SNX1-204ENST00000559061 TOMM22Q9NS69 142 aa13.51□□□□□ -0.25
SNX1-204ENST00000559061 SYNPO2Q9UMS6 1093 aa13.51□□□□□ -0.25
SNX1-204ENST00000559061 TNKSO95271 1327 aa13.5□□□□□ -0.25
SNX1-204ENST00000559061 WDR46O15213 610 aaKnown RBP13.5□□□□□ -0.25
SNX1-204ENST00000559061 HERVK_113P62684 666 aa13.5□□□□□ -0.25
SNX1-204ENST00000559061 TSGA10IPQ3SY00 556 aa13.5□□□□□ -0.25
SNX1-204ENST00000559061 COL13A1Q5TAT6 717 aaPredicted RBP13.5□□□□□ -0.25
SNX1-204ENST00000559061 KIAA1211Q6ZU35 1233 aa13.5□□□□□ -0.25
SNX1-204ENST00000559061 CHST3Q7LGC8 479 aa13.5□□□□□ -0.25
SNX1-204ENST00000559061 ESR2Q92731 530 aa13.5□□□□□ -0.25
SNX1-204ENST00000559061 USP26Q9BXU7 913 aa13.5□□□□□ -0.25
SNX1-204ENST00000559061 RBPJLQ9UBG7 517 aa13.5□□□□□ -0.25
SNX1-204ENST00000559061 ADAMTS5Q9UNA0 930 aa13.5□□□□□ -0.25
SNX1-204ENST00000559061 SMCHD1A6NHR9 2005 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 USP17L15C9J2P7 530 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 USP17L13C9JLJ4 530 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 USP17L11C9JVI0 530 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 USP17L18D6R9N7 530 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 USP17L22D6RA61 530 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 USP17L17D6RBQ6 530 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 USP17L19D6RCP7 530 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 USP17L20D6RJB6 530 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 USP17L24Q0WX57 530 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 Q3C1V9 767 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 CASC1Q6TDU7 716 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 LBX2Q6XYB7 198 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 ANKRD13CQ8N6S4 541 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 REPS2Q8NFH8 660 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 CD99L2Q8TCZ2 262 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 CHMP4CQ96CF2 233 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 ZSCAN10Q96SZ4 725 aaPredicted RBP13.49□□□□□ -0.25
SNX1-204ENST00000559061 KRT23Q9C075 422 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 CNNM2Q9H8M5 875 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 BTBD7Q9P203 1132 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 MORF4L1Q9UBU8 362 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 STX8Q9UNK0 236 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 SNX14Q9Y5W7 946 aa13.49□□□□□ -0.25
SNX1-204ENST00000559061 FKTNO75072 461 aa13.48□□□□□ -0.25
SNX1-204ENST00000559061 SNHG28P0DPA3 235 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms