RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 GPRASP2Q96D09 838 aa6.17□□□□□ -1.42
VPS13C-207ENST00000558919 GPR62Q9BZJ7 368 aa6.17□□□□□ -1.42
VPS13C-207ENST00000558919 TRIT1Q9H3H1 467 aaKnown RBP6.17□□□□□ -1.42
VPS13C-207ENST00000558919 SRFP11831 508 aa6.16□□□□□ -1.42
VPS13C-207ENST00000558919 GJA8P48165 433 aa6.16□□□□□ -1.42
VPS13C-207ENST00000558919 RNF4P78317 190 aa6.16□□□□□ -1.42
VPS13C-207ENST00000558919 ZNF792Q3KQV3 632 aa6.16□□□□□ -1.42
VPS13C-207ENST00000558919 INTS3Q68E01 1043 aaKnown RBP6.16□□□□□ -1.42
VPS13C-207ENST00000558919 SLC23A3Q6PIS1 610 aa6.16□□□□□ -1.42
VPS13C-207ENST00000558919 RBBP8NLQ8NC74 664 aaPredicted RBP6.16□□□□□ -1.42
VPS13C-207ENST00000558919 UBE2FQ969M7 185 aa6.16□□□□□ -1.42
VPS13C-207ENST00000558919 ZNF428Q96B54 188 aa6.16□□□□□ -1.42
VPS13C-207ENST00000558919 FERD3LQ96RJ6 166 aa6.16□□□□□ -1.42
VPS13C-207ENST00000558919 DUSP15Q9H1R2 295 aaPredicted RBP6.16□□□□□ -1.42
VPS13C-207ENST00000558919 ANTXR1Q9H6X2 564 aa6.16□□□□□ -1.42
VPS13C-207ENST00000558919 GOLGA2P5Q9HBQ8 144 aa6.16□□□□□ -1.42
VPS13C-207ENST00000558919 ATP13A1Q9HD20 1204 aa6.16□□□□□ -1.42
VPS13C-207ENST00000558919 ZSWIM5Q9P217 1185 aa6.16□□□□□ -1.42
VPS13C-207ENST00000558919 TCF3P15923 654 aa6.15□□□□□ -1.42
VPS13C-207ENST00000558919 SOX9P48436 509 aa6.15□□□□□ -1.42
VPS13C-207ENST00000558919 RBM25P49756 843 aaKnown RBP6.15□□□□□ -1.42
VPS13C-207ENST00000558919 ZP2Q05996 745 aa6.15□□□□□ -1.42
VPS13C-207ENST00000558919 MCTP1Q6DN14 999 aa6.15□□□□□ -1.42
VPS13C-207ENST00000558919 TMPRSS7Q7RTY8 843 aa6.15□□□□□ -1.42
VPS13C-207ENST00000558919 TAB3Q8N5C8 712 aaPredicted RBP6.15□□□□□ -1.42
VPS13C-207ENST00000558919 GINM1Q9NU53 330 aa6.15□□□□□ -1.42
VPS13C-207ENST00000558919 RBAK-RBAKDNI3L0D1 243 aa6.14□□□□□ -1.43
VPS13C-207ENST00000558919 LRRN2O75325 713 aa6.14□□□□□ -1.43
VPS13C-207ENST00000558919 RNASE1P07998 156 aaKnown RBP6.14□□□□□ -1.43
VPS13C-207ENST00000558919 TAL1P17542 331 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-207ENST00000558919 POLR2BP30876 1174 aaKnown RBP6.14□□□□□ -1.43
VPS13C-207ENST00000558919 NBPF12Q5TAG4 269 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-207ENST00000558919 TM9SF2Q99805 663 aa6.14□□□□□ -1.43
VPS13C-207ENST00000558919 ACBD3Q9H3P7 528 aa6.14□□□□□ -1.43
VPS13C-207ENST00000558919 CCSER2Q9H7U1 834 aa6.14□□□□□ -1.43
VPS13C-207ENST00000558919 MBNL3Q9NUK0 354 aaKnown RBP6.14□□□□□ -1.43
VPS13C-207ENST00000558919 GPATCH2Q9NW75 528 aa6.14□□□□□ -1.43
VPS13C-207ENST00000558919 PPT2Q9UMR5 302 aa6.14□□□□□ -1.43
VPS13C-207ENST00000558919 EFR3BQ9Y2G0 817 aa6.14□□□□□ -1.43
VPS13C-207ENST00000558919 CLEC3AO75596 197 aa6.13□□□□□ -1.43
VPS13C-207ENST00000558919 ERCC5P28715 1186 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-207ENST00000558919 TPP2P29144 1249 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-207ENST00000558919 GAB4Q2WGN9 574 aa6.13□□□□□ -1.43
VPS13C-207ENST00000558919 LCE1DQ5T752 114 aa6.13□□□□□ -1.43
VPS13C-207ENST00000558919 TSPYL5Q86VY4 417 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-207ENST00000558919 SLC9A7Q96T83 725 aa6.13□□□□□ -1.43
VPS13C-207ENST00000558919 CARS2Q9HA77 564 aaKnown RBP6.13□□□□□ -1.43
VPS13C-207ENST00000558919 ADAMTS6Q9UKP5 1117 aa6.13□□□□□ -1.43
VPS13C-207ENST00000558919 ESR1P03372 595 aa6.12□□□□□ -1.43
VPS13C-207ENST00000558919 FBXW10Q5XX13 1052 aa6.12□□□□□ -1.43
VPS13C-207ENST00000558919 ATG4DQ86TL0 474 aaPredicted RBP6.12□□□□□ -1.43
VPS13C-207ENST00000558919 ENOX1Q8TC92 643 aaKnown RBP6.12□□□□□ -1.43
VPS13C-207ENST00000558919 SEC16BQ96JE7 1060 aa6.12□□□□□ -1.43
VPS13C-207ENST00000558919 RC3H2Q9HBD1 1191 aaKnown RBP6.12□□□□□ -1.43
VPS13C-207ENST00000558919 INPP5FQ9Y2H2 1132 aa6.12□□□□□ -1.43
VPS13C-207ENST00000558919 BIN1O00499 593 aa6.11□□□□□ -1.43
VPS13C-207ENST00000558919 ACRP10323 421 aa6.11□□□□□ -1.43
VPS13C-207ENST00000558919 JUNBP17275 347 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-207ENST00000558919 ITGB5P18084 799 aa6.11□□□□□ -1.43
VPS13C-207ENST00000558919 NBPF9Q3BBW0 867 aa6.11□□□□□ -1.43
VPS13C-207ENST00000558919 LSRQ86X29 649 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-207ENST00000558919 TMEM192Q8IY95 271 aa6.11□□□□□ -1.43
VPS13C-207ENST00000558919 LRRN4CLQ8ND94 238 aa6.11□□□□□ -1.43
VPS13C-207ENST00000558919 OR6P1Q8NGX9 317 aa6.11□□□□□ -1.43
VPS13C-207ENST00000558919 CCDC120Q96HB5 630 aa6.11□□□□□ -1.43
VPS13C-207ENST00000558919 DHRS1Q96LJ7 313 aa6.11□□□□□ -1.43
VPS13C-207ENST00000558919 SLC6A18Q96N87 628 aa6.11□□□□□ -1.43
VPS13C-207ENST00000558919 CRBNQ96SW2 442 aa6.11□□□□□ -1.43
VPS13C-207ENST00000558919 ASCC2Q9H1I8 757 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-207ENST00000558919 WASH4PA8MWX3 477 aa6.1□□□□□ -1.43
VPS13C-207ENST00000558919 E9PSI1 815 aa6.1□□□□□ -1.43
VPS13C-207ENST00000558919 GUCY2CP25092 1073 aa6.1□□□□□ -1.43
VPS13C-207ENST00000558919 GIPRP48546 466 aa6.1□□□□□ -1.43
VPS13C-207ENST00000558919 NASPP49321 788 aaPredicted RBP6.1□□□□□ -1.43
VPS13C-207ENST00000558919 EIF6P56537 245 aaKnown RBP6.1□□□□□ -1.43
VPS13C-207ENST00000558919 CCDC81Q6ZN84 652 aa6.1□□□□□ -1.43
VPS13C-207ENST00000558919 CREG2Q8IUH2 290 aa6.1□□□□□ -1.43
VPS13C-207ENST00000558919 SRRTQ9BXP5 876 aaKnown RBP6.1□□□□□ -1.43
VPS13C-207ENST00000558919 PRDM7Q9NQW5 492 aa6.1□□□□□ -1.43
VPS13C-207ENST00000558919 SUCOQ9UBS9 1254 aaKnown RBP6.1□□□□□ -1.43
VPS13C-207ENST00000558919 DUSP13Q9UII6 198 aa6.1□□□□□ -1.43
VPS13C-207ENST00000558919 SHISA3A0PJX4 238 aa6.09□□□□□ -1.43
VPS13C-207ENST00000558919 NMIQ13287 307 aaPredicted RBP6.09□□□□□ -1.43
VPS13C-207ENST00000558919 CLEC16AQ2KHT3 1053 aa6.09□□□□□ -1.43
VPS13C-207ENST00000558919 FLAD1Q8NFF5 587 aa6.09□□□□□ -1.43
VPS13C-207ENST00000558919 SYTL5Q8TDW5 730 aaPredicted RBP6.09□□□□□ -1.43
VPS13C-207ENST00000558919 SMARCC1Q92922 1105 aaPredicted RBP6.09□□□□□ -1.43
VPS13C-207ENST00000558919 ALPK1Q96QP1 1244 aa6.09□□□□□ -1.43
VPS13C-207ENST00000558919 IGSF5Q9NSI5 407 aa6.09□□□□□ -1.43
VPS13C-207ENST00000558919 STRIP2Q9ULQ0 834 aa6.09□□□□□ -1.43
VPS13C-207ENST00000558919 SLC12A7Q9Y666 1083 aa6.09□□□□□ -1.43
VPS13C-207ENST00000558919 ATF4P18848 351 aaPredicted RBP6.08□□□□□ -1.44
VPS13C-207ENST00000558919 GDNFP39905 211 aa6.08□□□□□ -1.44
VPS13C-207ENST00000558919 PMS1P54277 932 aaKnown RBP6.08□□□□□ -1.44
VPS13C-207ENST00000558919 UNC5AQ6ZN44 842 aa6.08□□□□□ -1.44
VPS13C-207ENST00000558919 RUFY4Q6ZNE9 571 aa6.08□□□□□ -1.44
VPS13C-207ENST00000558919 VPS37DQ86XT2 251 aa6.08□□□□□ -1.44
VPS13C-207ENST00000558919 C19orf47Q8N9M1 422 aaKnown RBP6.08□□□□□ -1.44
VPS13C-207ENST00000558919 DAGLBQ8NCG7 672 aa6.08□□□□□ -1.44
VPS13C-207ENST00000558919 ASIC4Q96FT7 647 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms