RNA–Protein interactions for RNA: ENST00000558700.5

TRAF3-205, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-205ENST00000558700 SIRT2Q8IXJ6 389 aa9.74□□□□□ -0.85
TRAF3-205ENST00000558700 U2AF1L4Q8WU68 220 aaKnown RBP9.74□□□□□ -0.85
TRAF3-205ENST00000558700 SOCS4Q8WXH5 440 aa9.74□□□□□ -0.85
TRAF3-205ENST00000558700 C12orf42Q96LP6 360 aa9.74□□□□□ -0.85
TRAF3-205ENST00000558700 HTATIP2Q9BUP3 242 aa9.74□□□□□ -0.85
TRAF3-205ENST00000558700 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.74□□□□□ -0.85
TRAF3-205ENST00000558700 BCL11AQ9H165 835 aa9.74□□□□□ -0.85
TRAF3-205ENST00000558700 UNC93B1Q9H1C4 597 aa9.74□□□□□ -0.85
TRAF3-205ENST00000558700 CABP5Q9NP86 173 aa9.74□□□□□ -0.85
TRAF3-205ENST00000558700 PAG1Q9NWQ8 432 aa9.74□□□□□ -0.85
TRAF3-205ENST00000558700 ZNF532Q9HCE3 1301 aa9.74□□□□□ -0.85
TRAF3-205ENST00000558700 FARP2O94887 1054 aaPredicted RBP9.73□□□□□ -0.85
TRAF3-205ENST00000558700 POLR3DP05423 398 aaPredicted RBP9.73□□□□□ -0.85
TRAF3-205ENST00000558700 ATP5JP18859 108 aa9.73□□□□□ -0.85
TRAF3-205ENST00000558700 JAG1P78504 1218 aa9.73□□□□□ -0.85
TRAF3-205ENST00000558700 RAB3GAP1Q15042 981 aa9.73□□□□□ -0.85
TRAF3-205ENST00000558700 ABCB5Q2M3G0 1257 aa9.73□□□□□ -0.85
TRAF3-205ENST00000558700 CERKLQ49MI3 558 aaPredicted RBP9.73□□□□□ -0.85
TRAF3-205ENST00000558700 LRRCC1Q9C099 1032 aa9.73□□□□□ -0.85
TRAF3-205ENST00000558700 ZNF236Q9UL36 1845 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 BRCA2P51587 3418 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 MKI67P46013 3256 aaKnown RBP9.72□□□□□ -0.85
TRAF3-205ENST00000558700 TCRBV5S4A2TA0A5A2 114 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 SEC24BO95487 1268 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 VCAM1P19320 739 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 MAPK4P31152 587 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 SHMT1P34896 483 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 ADD2P35612 726 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 ERVK-9P63128 1117 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 ERVK-24P63145 666 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 ZYXQ15942 572 aaKnown RBP9.72□□□□□ -0.85
TRAF3-205ENST00000558700 C20orf194Q5TEA3 1177 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 ASTLQ6HA08 431 aaPredicted RBP9.72□□□□□ -0.85
TRAF3-205ENST00000558700 CCAR1Q8IX12 1150 aaKnown RBP9.72□□□□□ -0.85
TRAF3-205ENST00000558700 AMOTL1Q8IY63 956 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 LCORLQ8N3X6 602 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 GPRC5AQ8NFJ5 357 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 GPATCH3Q96I76 525 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 EPAS1Q99814 870 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 HAUS7Q99871 368 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 PAGR1Q9BTK6 254 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 KIAA1683Q9H0B3 1180 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.72□□□□□ -0.85
TRAF3-205ENST00000558700 CWC22Q9HCG8 908 aaKnown RBP9.72□□□□□ -0.85
TRAF3-205ENST00000558700 GPCPD1Q9NPB8 672 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 DCP1AQ9NPI6 582 aaPredicted RBP9.72□□□□□ -0.85
TRAF3-205ENST00000558700 MCM9Q9NXL9 1143 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 FRMPD3Q5JV73 1810 aa9.72□□□□□ -0.85
TRAF3-205ENST00000558700 PARP14Q460N5 1801 aa9.71□□□□□ -0.85
TRAF3-205ENST00000558700 USP17L15C9J2P7 530 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 USP17L13C9JLJ4 530 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 USP17L11C9JVI0 530 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 USP17L18D6R9N7 530 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 USP17L22D6RA61 530 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 USP17L17D6RBQ6 530 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 USP17L19D6RCP7 530 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 USP17L20D6RJB6 530 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 MPHOSPH10O00566 681 aaKnown RBP9.71□□□□□ -0.86
TRAF3-205ENST00000558700 MAP3K7O43318 606 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 MBD4O95243 580 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 SGPL1O95470 568 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 PLCD1P51178 756 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 CCNA1P78396 465 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 GABPAQ06546 454 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 USP17L24Q0WX57 530 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 HABP4Q5JVS0 413 aaKnown RBP9.71□□□□□ -0.86
TRAF3-205ENST00000558700 ZSCAN25Q6NSZ9 544 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 UBE2Q1Q7Z7E8 422 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 TRMT44Q8IYL2 757 aaKnown RBP9.71□□□□□ -0.86
TRAF3-205ENST00000558700 SDR42E1Q8WUS8 393 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 EDC3Q96F86 508 aaKnown RBP9.71□□□□□ -0.86
TRAF3-205ENST00000558700 DEFB118Q96PH6 123 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 P2RX7Q99572 595 aaKnown RBP9.71□□□□□ -0.86
TRAF3-205ENST00000558700 APBA2Q99767 749 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 NUDT12Q9BQG2 462 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 BOLA2Q9H3K6 86 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 SH2D4AQ9H788 454 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 ARMT1Q9H993 441 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 TXNRD2Q9NNW7 524 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 PAK6Q9NQU5 681 aaPredicted RBP9.71□□□□□ -0.86
TRAF3-205ENST00000558700 SWAP70Q9UH65 585 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 RABGAP1Q9Y3P9 1069 aa9.71□□□□□ -0.86
TRAF3-205ENST00000558700 GLRX3O76003 335 aaKnown RBP9.7□□□□□ -0.86
TRAF3-205ENST00000558700 ZKSCAN1P17029 563 aaPredicted RBP9.7□□□□□ -0.86
TRAF3-205ENST00000558700 RGS2P41220 211 aa9.7□□□□□ -0.86
TRAF3-205ENST00000558700 UBE3CQ15386 1083 aa9.7□□□□□ -0.86
TRAF3-205ENST00000558700 TMEM179Q6ZVK1 233 aa9.7□□□□□ -0.86
TRAF3-205ENST00000558700 GPR142Q7Z601 462 aa9.7□□□□□ -0.86
TRAF3-205ENST00000558700 PTCD2Q8WV60 388 aaKnown RBP9.7□□□□□ -0.86
TRAF3-205ENST00000558700 ATP8A2Q9NTI2 1148 aa9.7□□□□□ -0.86
TRAF3-205ENST00000558700 NR2E3Q9Y5X4 410 aa9.7□□□□□ -0.86
TRAF3-205ENST00000558700 ALPK3Q96L96 1907 aa9.7□□□□□ -0.86
TRAF3-205ENST00000558700 GREB1LQ9C091 1923 aaPredicted RBP9.7□□□□□ -0.86
TRAF3-205ENST00000558700 CEP290O15078 2479 aa9.7□□□□□ -0.86
TRAF3-205ENST00000558700 H0YGN5 161 aa9.69□□□□□ -0.86
TRAF3-205ENST00000558700 HAX1O00165 279 aa9.69□□□□□ -0.86
TRAF3-205ENST00000558700 TRAK2O60296 914 aa9.69□□□□□ -0.86
TRAF3-205ENST00000558700 TFRCP02786 760 aaKnown RBP9.69□□□□□ -0.86
TRAF3-205ENST00000558700 XRCC5P13010 732 aaKnown RBP9.69□□□□□ -0.86
TRAF3-205ENST00000558700 MDM2Q00987 491 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms