RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 NAP1L2Q9ULW6 460 aaPredicted RBP11.27□□□□□ -0.61
CUX1-216ENST00000558469 ZHX2Q9Y6X8 837 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 A0A1W2PRG0 241 aa11.26□□□□□ -0.61
CUX1-216ENST00000558469 UNCXA6NJT0 531 aa11.26□□□□□ -0.61
CUX1-216ENST00000558469 CD2BP2O95400 341 aaKnown RBP11.26□□□□□ -0.61
CUX1-216ENST00000558469 TOP1P11387 765 aaKnown RBP11.26□□□□□ -0.61
CUX1-216ENST00000558469 ECE1P42892 770 aa11.26□□□□□ -0.61
CUX1-216ENST00000558469 NOVP48745 357 aa11.26□□□□□ -0.61
CUX1-216ENST00000558469 MNX1P50219 401 aaPredicted RBP11.26□□□□□ -0.61
CUX1-216ENST00000558469 HUNKP57058 714 aa11.26□□□□□ -0.61
CUX1-216ENST00000558469 LRRC47Q8N1G4 583 aaKnown RBP11.26□□□□□ -0.61
CUX1-216ENST00000558469 PNMA1Q8ND90 353 aa11.26□□□□□ -0.61
CUX1-216ENST00000558469 IL27Q8NEV9 243 aa11.26□□□□□ -0.61
CUX1-216ENST00000558469 ACER1Q8TDN7 264 aa11.26□□□□□ -0.61
CUX1-216ENST00000558469 CHMP4CQ96CF2 233 aa11.26□□□□□ -0.61
CUX1-216ENST00000558469 AGXT2Q9BYV1 514 aa11.26□□□□□ -0.61
CUX1-216ENST00000558469 AS3MTQ9HBK9 375 aa11.26□□□□□ -0.61
CUX1-216ENST00000558469 BRPF3Q9ULD4 1205 aa11.26□□□□□ -0.61
CUX1-216ENST00000558469 MTMR7Q9Y216 660 aa11.26□□□□□ -0.61
CUX1-216ENST00000558469 KLF18A0A0U1RQI7 1052 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 TMEM88BA6NKF7 163 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 RAD21O60216 631 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 SPP2Q13103 211 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 ZYXQ15942 572 aaKnown RBP11.25□□□□□ -0.61
CUX1-216ENST00000558469 SYNE3Q6ZMZ3 975 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 CATIPQ7Z7H3 387 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 SGMS1Q86VZ5 419 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 ERO1BQ86YB8 467 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 ZNF654Q8IZM8 581 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 ZNF280CQ8ND82 737 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 MKL1Q969V6 931 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 OPTNQ96CV9 577 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 OTUD5Q96G74 571 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 FEZ1Q99689 392 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 WDR18Q9BV38 432 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 TBC1D2Q9BYX2 928 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 TPCN1Q9ULQ1 816 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 RBM19Q9Y4C8 960 aaKnown RBP11.25□□□□□ -0.61
CUX1-216ENST00000558469 AFG3L2Q9Y4W6 797 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 SLC12A7Q9Y666 1083 aa11.25□□□□□ -0.61
CUX1-216ENST00000558469 LOC285556D6RIA3 1793 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 PARP14Q460N5 1801 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 SPDYE5A6NIY4 337 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 TRIM75PA6NK02 468 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 USP17L10C9JJH3 530 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 PPATQ06203 517 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 STK3Q13188 491 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 APOA5Q6Q788 366 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 SAPCD2Q86UD0 394 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 RAB11FIP4Q86YS3 637 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 NUP133Q8WUM0 1156 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 MYL10Q9BUA6 226 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 SH2D4AQ9H788 454 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 GOPCQ9HD26 462 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 ABT1Q9ULW3 272 aaKnown RBP11.24□□□□□ -0.61
CUX1-216ENST00000558469 LIMCH1Q9UPQ0 1083 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 TMX2Q9Y320 296 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 TLL2Q9Y6L7 1015 aa11.24□□□□□ -0.61
CUX1-216ENST00000558469 BAZ2BQ9UIF8 2168 aaKnown RBP11.24□□□□□ -0.61
CUX1-216ENST00000558469 GOLGA8BA8MQT2 603 aa11.23□□□□□ -0.61
CUX1-216ENST00000558469 IRF6O14896 467 aa11.23□□□□□ -0.61
CUX1-216ENST00000558469 ZBTB43O43298 467 aa11.23□□□□□ -0.61
CUX1-216ENST00000558469 RXRAP19793 462 aa11.23□□□□□ -0.61
CUX1-216ENST00000558469 PDIA3P30101 505 aaKnown RBP11.23□□□□□ -0.61
CUX1-216ENST00000558469 MCM2P49736 904 aa11.23□□□□□ -0.61
CUX1-216ENST00000558469 APLP1P51693 650 aa11.23□□□□□ -0.61
CUX1-216ENST00000558469 ZNF157P51786 506 aaPredicted RBP11.23□□□□□ -0.61
CUX1-216ENST00000558469 BACE1P56817 501 aa11.23□□□□□ -0.61
CUX1-216ENST00000558469 EVCP57679 992 aa11.23□□□□□ -0.61
CUX1-216ENST00000558469 PPIL2Q13356 520 aa11.23□□□□□ -0.61
CUX1-216ENST00000558469 MTMR2Q13614 643 aa11.23□□□□□ -0.61
CUX1-216ENST00000558469 MICU3Q86XE3 530 aa11.23□□□□□ -0.61
CUX1-216ENST00000558469 CCDC144CPQ8IYA2 1237 aa11.23□□□□□ -0.61
CUX1-216ENST00000558469 ZNF274Q96GC6 653 aaPredicted RBP11.23□□□□□ -0.61
CUX1-216ENST00000558469 WNK4Q96J92 1243 aa11.23□□□□□ -0.61
CUX1-216ENST00000558469 C19orf81C9J6K1 198 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 F5H6K3 240 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 DDAH1O94760 285 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 LARGE1O95461 756 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 CALM1P0DP23 149 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 CALM2P0DP24 149 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 CALM3P0DP25 149 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 COL11A1P12107 1806 aaPredicted RBP11.22□□□□□ -0.61
CUX1-216ENST00000558469 GJA5P36382 358 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 ANP32AP39687 249 aaKnown RBP11.22□□□□□ -0.61
CUX1-216ENST00000558469 USP14P54578 494 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 HMGCS2P54868 508 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 CCT2P78371 535 aaKnown RBP11.22□□□□□ -0.61
CUX1-216ENST00000558469 KLRC3Q07444 240 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 TROAPQ12815 778 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 MKRN3Q13064 507 aaKnown RBP11.22□□□□□ -0.61
CUX1-216ENST00000558469 DGKZQ13574 1117 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 ME3Q16798 604 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 KIAA1755Q5JYT7 1200 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 SLFN13Q68D06 897 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 RGMBQ6NW40 437 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 USP17L2Q6R6M4 530 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 RASGRP2Q7LDG7 609 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 HSCBQ8IWL3 235 aa11.22□□□□□ -0.61
CUX1-216ENST00000558469 SPICE1Q8N0Z3 855 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms