RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 MLKLQ8NB16 471 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 CTCFLQ8NI51 663 aaPredicted RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 CELF1Q92879 486 aaKnown RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 ERCC4Q92889 916 aaPredicted RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 FERMT2Q96AC1 680 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 XPO4Q9C0E2 1151 aaKnown RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 IFNKQ9P0W0 207 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 RTCBQ9Y3I0 505 aaKnown RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 TAF1LQ8IZX4 1826 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 KIF5BP33176 963 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 TRAPPC10P48553 1259 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 TOB1P50616 345 aaPredicted RBP8.31□□□□□ -1.08
VPS13C-206ENST00000558338 GSTO1P78417 241 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 MECOMQ03112 1051 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 PDE4CQ08493 712 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 PTPN14Q15678 1187 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 NT5DC1Q5TFE4 455 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 CTR9Q6PD62 1173 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 BICDL1Q6ZP65 573 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 TMTC3Q6ZXV5 915 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 TMC6Q7Z403 805 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 METTL16Q86W50 562 aaKnown RBP8.31□□□□□ -1.08
VPS13C-206ENST00000558338 STK11IPQ8N1F8 1099 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 SMARCE1Q969G3 411 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 ZFP91Q96JP5 570 aaPredicted RBP8.31□□□□□ -1.08
VPS13C-206ENST00000558338 C16orf45Q96MC5 204 aaPredicted RBP8.31□□□□□ -1.08
VPS13C-206ENST00000558338 PHF20Q9BVI0 1012 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 BCL2L12Q9HB09 334 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 AATFQ9NY61 560 aaKnown RBP eCLIP8.31□□□□□ -1.08
VPS13C-206ENST00000558338 KCNJ14Q9UNX9 436 aa8.31□□□□□ -1.08
VPS13C-206ENST00000558338 ARIH1Q9Y4X5 557 aaPredicted RBP8.31□□□□□ -1.08
VPS13C-206ENST00000558338 TAF1P21675 1872 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 PSDA5PKW4 1024 aaPredicted RBP8.3□□□□□ -1.08
VPS13C-206ENST00000558338 GNPATO15228 680 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 CTIFO43310 598 aaKnown RBP8.3□□□□□ -1.08
VPS13C-206ENST00000558338 SERPINC1P01008 464 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 DYNLL1P63167 89 aaKnown RBP8.3□□□□□ -1.08
VPS13C-206ENST00000558338 RBM10P98175 930 aaKnown RBP8.3□□□□□ -1.08
VPS13C-206ENST00000558338 PNOCQ13519 176 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 LONRF3Q496Y0 759 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 CEP135Q66GS9 1140 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 SMYD5Q6GMV2 418 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 DZIP1Q86YF9 867 aaKnown RBP8.3□□□□□ -1.08
VPS13C-206ENST00000558338 WDR66Q8TBY9 1149 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 CLIC6Q96NY7 704 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 LEMD3Q9Y2U8 911 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 NAV1Q8NEY1 1877 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 SBF2Q86WG5 1849 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 ROBO3Q96MS0 1386 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 CNTNAP5Q8WYK1 1306 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 A0A087WWV3 80 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 USP17L12C9JPN9 530 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 USP17L21D6R901 530 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 CALML3P27482 149 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 UBASH3AP57075 661 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 FUT2Q10981 343 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 TROAPQ12815 778 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 CCAR2Q8N163 923 aaKnown RBP8.3□□□□□ -1.08
VPS13C-206ENST00000558338 NGLY1Q96IV0 654 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 DCP1AQ9NPI6 582 aaPredicted RBP8.3□□□□□ -1.08
VPS13C-206ENST00000558338 IGSF5Q9NSI5 407 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 CCNL1Q9UK58 526 aaPredicted RBP8.3□□□□□ -1.08
VPS13C-206ENST00000558338 PCDHB6Q9Y5E3 794 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 PCDHA5Q9Y5H7 936 aa8.3□□□□□ -1.08
VPS13C-206ENST00000558338 TNRC6CQ9HCJ0 1690 aaKnown RBP8.29□□□□□ -1.08
VPS13C-206ENST00000558338 NPHP1O15259 732 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 POLR2DO15514 142 aaKnown RBP8.29□□□□□ -1.08
VPS13C-206ENST00000558338 BAG3O95817 575 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 LMOD1P29536 600 aaPredicted RBP8.29□□□□□ -1.08
VPS13C-206ENST00000558338 GNAQP50148 359 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 MDM2Q00987 491 aaPredicted RBP8.29□□□□□ -1.08
VPS13C-206ENST00000558338 NR5A1Q13285 461 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 GRAPQ13588 217 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 PKN1Q16512 942 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 CFAP100Q494V2 611 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 NYAP1Q6ZVC0 841 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 ZNF804AQ7Z570 1209 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 FCHSD1Q86WN1 690 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 GRAPLQ8TC17 118 aaPredicted RBP8.29□□□□□ -1.08
VPS13C-206ENST00000558338 ZNF287Q9HBT7 754 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 CABP5Q9NP86 173 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 SH3GLB2Q9NR46 395 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 VPS54Q9P1Q0 977 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 MAN1B1Q9UKM7 699 aa8.29□□□□□ -1.08
VPS13C-206ENST00000558338 TSPY2A6NKD2 308 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 UBE2Q2LH0YL09 131 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 ACTN4O43707 911 aaKnown RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 PLEKHA8P1O95397 391 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 LDHCP07864 332 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 TOP1P11387 765 aaKnown RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 SCG2P13521 617 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 ERCC5P28715 1186 aaPredicted RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 SARSP49591 514 aaKnown RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 MORC3Q14149 939 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 C15orf52Q6ZUT6 534 aaKnown RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 GPIHBP1Q8IV16 184 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 VSTM4Q8IW00 320 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 PDCD7Q8N8D1 485 aaKnown RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 KIF18AQ8NI77 898 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms