RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 SALL3Q9BXA9 1300 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 GSG1L2A8MUP6 293 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 TSPY3P0CV98 308 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 TSPY8P0CW00 308 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 COPB2P35606 906 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 ATP2B2Q01814 1243 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 MOGSQ13724 837 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 SEPT2Q15019 361 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 ANKRD13CQ8N6S4 541 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 NKX2-3Q8TAU0 364 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 OTUD7AQ8TE49 926 aaPredicted RBP10.28□□□□□ -0.76
USP3-208ENST00000558285 SOCS4Q8WXH5 440 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 TANGO6Q9C0B7 1094 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 BIN2Q9UBW5 565 aaPredicted RBP10.28□□□□□ -0.76
USP3-208ENST00000558285 CTNNA3Q9UI47 895 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 IVNS1ABPQ9Y6Y0 642 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 MYH7P12883 1935 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 ROBO3Q96MS0 1386 aa10.28□□□□□ -0.76
USP3-208ENST00000558285 WDR46O15213 610 aaKnown RBP10.27□□□□□ -0.76
USP3-208ENST00000558285 HERVK_113P62684 666 aa10.27□□□□□ -0.76
USP3-208ENST00000558285 ZYXQ15942 572 aaKnown RBP10.27□□□□□ -0.76
USP3-208ENST00000558285 TREML2Q5T2D2 321 aa10.27□□□□□ -0.76
USP3-208ENST00000558285 CCDC84Q86UT8 332 aaPredicted RBP10.27□□□□□ -0.76
USP3-208ENST00000558285 SLC5A4Q9NY91 659 aa10.27□□□□□ -0.76
USP3-208ENST00000558285 MORF4L1Q9UBU8 362 aa10.27□□□□□ -0.76
USP3-208ENST00000558285 RABGAP1Q9Y3P9 1069 aa10.27□□□□□ -0.76
USP3-208ENST00000558285 ADGRA2Q96PE1 1338 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 M0R2C6 588 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 IGHDP01880 384 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 CYP2D6P10635 497 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 VCAM1P19320 739 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 MLLT1Q03111 559 aaPredicted RBP10.27□□□□□ -0.77
USP3-208ENST00000558285 PPARAQ07869 468 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 COG2Q14746 738 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 ALX1Q15699 326 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 CCDC178Q5BJE1 867 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 CENPQQ7L2Z9 268 aaPredicted RBP10.27□□□□□ -0.77
USP3-208ENST00000558285 PLEKHM2Q8IWE5 1019 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 ARMC5Q96C12 935 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 DYNLL2Q96FJ2 89 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 VCPKMTQ9H867 229 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 TMX2Q9Y320 296 aa10.27□□□□□ -0.77
USP3-208ENST00000558285 MYO5AQ9Y4I1 1855 aaKnown RBP10.26□□□□□ -0.77
USP3-208ENST00000558285 ZMYM6O95789 1325 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 CCDC171Q6TFL3 1326 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 RAD21O60216 631 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 TTLL1O95922 423 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 SDSP20132 328 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 IRF5Q13568 498 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 RRP1BQ14684 758 aaKnown RBP10.26□□□□□ -0.77
USP3-208ENST00000558285 CASC1Q6TDU7 716 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 CATSPERGQ6ZRH7 1159 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 PXYLP1Q8TE99 480 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 RPAP3Q9H6T3 665 aaPredicted RBP10.26□□□□□ -0.77
USP3-208ENST00000558285 TOMM22Q9NS69 142 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 EMILIN3Q9NT22 766 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 NYAP2Q9P242 653 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 CDK5RAP2Q96SN8 1893 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 RAD50Q92878 1312 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 ATAD5Q96QE3 1844 aa10.26□□□□□ -0.77
USP3-208ENST00000558285 TSPY2A6NKD2 308 aa10.25□□□□□ -0.77
USP3-208ENST00000558285 FLOT1O75955 427 aa10.25□□□□□ -0.77
USP3-208ENST00000558285 FDX1P10109 184 aa10.25□□□□□ -0.77
USP3-208ENST00000558285 AKR1B1P15121 316 aa10.25□□□□□ -0.77
USP3-208ENST00000558285 GRK4P32298 578 aa10.25□□□□□ -0.77
USP3-208ENST00000558285 LBX2Q6XYB7 198 aa10.25□□□□□ -0.77
USP3-208ENST00000558285 SLC44A5Q8NCS7 719 aa10.25□□□□□ -0.77
USP3-208ENST00000558285 NUDT12Q9BQG2 462 aa10.25□□□□□ -0.77
USP3-208ENST00000558285 PAGR1Q9BTK6 254 aa10.25□□□□□ -0.77
USP3-208ENST00000558285 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.25□□□□□ -0.77
USP3-208ENST00000558285 PTCH2Q9Y6C5 1203 aa10.25□□□□□ -0.77
USP3-208ENST00000558285 SLURP2P0DP57 97 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 EEF2P13639 858 aaKnown RBP10.24□□□□□ -0.77
USP3-208ENST00000558285 ERVK-9P63128 1117 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 ERVK-24P63145 666 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 IRX6P78412 446 aaPredicted RBP10.24□□□□□ -0.77
USP3-208ENST00000558285 IMMTQ16891 758 aaKnown RBP10.24□□□□□ -0.77
USP3-208ENST00000558285 GLIPR1L2Q4G1C9 344 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 MAMSTRQ6ZN01 415 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 MFSD6Q6ZSS7 791 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 HS6ST3Q8IZP7 471 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 P2RX7Q99572 595 aaKnown RBP10.24□□□□□ -0.77
USP3-208ENST00000558285 ANAPC4Q9UJX5 808 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 PNMA2Q9UL42 364 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 CIZ1Q9ULV3 898 aaPredicted RBP10.24□□□□□ -0.77
USP3-208ENST00000558285 SSUH2Q9Y2M2 353 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 DDX60LQ5H9U9 1706 aaKnown RBP10.24□□□□□ -0.77
USP3-208ENST00000558285 LOC285556D6RIA3 1793 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 CYP2D7A0A087X1C5 515 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 ZNF213O14771 459 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 STRNO43815 780 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 ADCY3O60266 1144 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 RASA1P20936 1047 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 RGS2P41220 211 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 NMIQ13287 307 aaPredicted RBP10.24□□□□□ -0.77
USP3-208ENST00000558285 SLFNL1Q499Z3 407 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 TTC22Q5TAA0 569 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 WDR78Q5VTH9 848 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 KIAA1211Q6ZU35 1233 aa10.24□□□□□ -0.77
USP3-208ENST00000558285 NEDD1Q8NHV4 660 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms