RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 LIMA1Q9UHB6 759 aaKnown RBP18.46■□□□□ 0.55
SHMT2-232ENST00000557487 MYO5AQ9Y4I1 1855 aaKnown RBP18.46■□□□□ 0.55
SHMT2-232ENST00000557487 NR5A1Q13285 461 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 SF3B2Q13435 895 aaKnown RBP18.45■□□□□ 0.54
SHMT2-232ENST00000557487 KIF4BQ2VIQ3 1234 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 NAPGQ99747 312 aaPredicted RBP18.45■□□□□ 0.54
SHMT2-232ENST00000557487 UBAC1Q9BSL1 405 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 ANKZF1Q9H8Y5 726 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 LZTFL1Q9NQ48 299 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 TMEM51Q9NW97 253 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 UBE2Q2LH0YL09 131 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 TEX33O43247 280 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 MTF1Q14872 753 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 ZNF569Q5MCW4 686 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 CYP26C1Q6V0L0 522 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 GRAMD1CQ8IYS0 662 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 ARMT1Q9H993 441 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 RBM28Q9NW13 759 aaKnown RBP18.45■□□□□ 0.54
SHMT2-232ENST00000557487 ANAPC4Q9UJX5 808 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 ADAM21Q9UKJ8 722 aa18.45■□□□□ 0.54
SHMT2-232ENST00000557487 ZNF330Q9Y3S2 320 aaPredicted RBP18.45■□□□□ 0.54
SHMT2-232ENST00000557487 ERVV-1B6SEH8 477 aa18.44■□□□□ 0.54
SHMT2-232ENST00000557487 PPP1R3GB7ZBB8 358 aa18.44■□□□□ 0.54
SHMT2-232ENST00000557487 PRPF3O43395 683 aaKnown RBP18.44■□□□□ 0.54
SHMT2-232ENST00000557487 TRIM37O94972 964 aa18.44■□□□□ 0.54
SHMT2-232ENST00000557487 ST5P78524 1137 aa18.44■□□□□ 0.54
SHMT2-232ENST00000557487 ZSCAN26Q16670 478 aa18.44■□□□□ 0.54
SHMT2-232ENST00000557487 DNAJC10Q8IXB1 793 aa18.44■□□□□ 0.54
SHMT2-232ENST00000557487 NEK11Q8NG66 645 aa18.44■□□□□ 0.54
SHMT2-232ENST00000557487 ESR2Q92731 530 aa18.44■□□□□ 0.54
SHMT2-232ENST00000557487 PHF20Q9BVI0 1012 aa18.44■□□□□ 0.54
SHMT2-232ENST00000557487 CTAGE15A4D2H0 777 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 IVLP07476 585 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 CTAGE8P0CG41 777 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 CALM1P0DP23 149 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 CALM2P0DP24 149 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 CALM3P0DP25 149 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 PCP11498 1178 aaKnown RBP18.43■□□□□ 0.54
SHMT2-232ENST00000557487 MCM3P25205 808 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 CTAGE6Q86UF2 777 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 CTAGE4Q8IX94 777 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 TRMT112Q9UI30 125 aaKnown RBP18.43■□□□□ 0.54
SHMT2-232ENST00000557487 RWDD2AQ9UIY3 292 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 L1RE1Q9UN81 338 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 TACC3Q9Y6A5 838 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 SLC4A4Q9Y6R1 1079 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 BCORQ6W2J9 1755 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 RAD51AP2Q09MP3 1159 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 SEMA3FQ13275 785 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 RMND1Q9NWS8 449 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 TAOK2Q9UL54 1235 aa18.43■□□□□ 0.54
SHMT2-232ENST00000557487 RPS6KA5O75582 802 aa18.42■□□□□ 0.54
SHMT2-232ENST00000557487 GYPCP04921 128 aa18.42■□□□□ 0.54
SHMT2-232ENST00000557487 CD44P16070 742 aaKnown RBP18.42■□□□□ 0.54
SHMT2-232ENST00000557487 CASP14P31944 242 aa18.42■□□□□ 0.54
SHMT2-232ENST00000557487 TRAPPC10P48553 1259 aa18.42■□□□□ 0.54
SHMT2-232ENST00000557487 RASGRF1Q13972 1273 aa18.42■□□□□ 0.54
SHMT2-232ENST00000557487 RRP12Q5JTH9 1297 aaKnown RBP18.42■□□□□ 0.54
SHMT2-232ENST00000557487 TMED8Q6PL24 325 aaPredicted RBP18.42■□□□□ 0.54
SHMT2-232ENST00000557487 USP49Q70CQ1 688 aa18.42■□□□□ 0.54
SHMT2-232ENST00000557487 OXER1Q8TDS5 423 aa18.42■□□□□ 0.54
SHMT2-232ENST00000557487 SYMPKQ92797 1274 aaKnown RBP18.42■□□□□ 0.54
SHMT2-232ENST00000557487 ZCCHC17Q9NP64 241 aaKnown RBP18.42■□□□□ 0.54
SHMT2-232ENST00000557487 INCENPQ9NQS7 918 aa18.42■□□□□ 0.54
SHMT2-232ENST00000557487 SEC31BQ9NQW1 1179 aa18.42■□□□□ 0.54
SHMT2-232ENST00000557487 TOMM22Q9NS69 142 aa18.42■□□□□ 0.54
SHMT2-232ENST00000557487 ACTN2P35609 894 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 PPARAQ07869 468 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 SEC23AQ15436 765 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 WDR93Q6P2C0 686 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 NUP133Q8WUM0 1156 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 TOGARAM1Q9Y4F4 1720 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 TNS1Q9HBL0 1735 aaKnown RBP18.41■□□□□ 0.54
SHMT2-232ENST00000557487 AFMP43652 599 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 BAG6P46379 1132 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 HLFQ16534 295 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 KLHL10Q6JEL2 608 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 LEKR1Q6ZMV7 388 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 SLC35F6Q8N357 371 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 IRX2Q9BZI1 471 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-232ENST00000557487 MED4Q9NPJ6 270 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 ABHD10Q9NUJ1 306 aa18.41■□□□□ 0.54
SHMT2-232ENST00000557487 A0A087X0B3 334 aa18.4■□□□□ 0.54
SHMT2-232ENST00000557487 H3BQF6 201 aa18.4■□□□□ 0.54
SHMT2-232ENST00000557487 GTPBP6O43824 516 aaPredicted RBP18.4■□□□□ 0.54
SHMT2-232ENST00000557487 GPTP24298 496 aa18.4■□□□□ 0.54
SHMT2-232ENST00000557487 ATP2C1P98194 919 aaPredicted RBP18.4■□□□□ 0.54
SHMT2-232ENST00000557487 SYNE4Q8N205 404 aa18.4■□□□□ 0.54
SHMT2-232ENST00000557487 LCORLQ8N3X6 602 aa18.4■□□□□ 0.54
SHMT2-232ENST00000557487 FAM71BQ8TC56 605 aa18.4■□□□□ 0.54
SHMT2-232ENST00000557487 EPSTI1Q96J88 318 aa18.4■□□□□ 0.54
SHMT2-232ENST00000557487 VIPAS39Q9H9C1 493 aa18.4■□□□□ 0.54
SHMT2-232ENST00000557487 PUF60Q9UHX1 559 aaKnown RBP18.4■□□□□ 0.54
SHMT2-232ENST00000557487 SBF2Q86WG5 1849 aa18.4■□□□□ 0.54
SHMT2-232ENST00000557487 N4BP3O15049 544 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 KRT31Q15323 416 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 PKN1Q16512 942 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 HSP90B2PQ58FF3 399 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 ZNF662Q6ZS27 426 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 CATIPQ7Z7H3 387 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms