RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 HOXC10Q9NYD6 342 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 CLIP2Q9UDT6 1046 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 PLIN4Q96Q06 1357 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 LAMA4Q16363 1823 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 RANBP6O60518 1105 aaKnown RBP12.66□□□□□ -0.38
LINC00239-201ENST00000556973 TTLL1O95922 423 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 HOXD10P28358 340 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 PSMC4P43686 418 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 NT5C2P49902 561 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 HAND2P61296 217 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 HERVK_113P62684 666 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 COG2Q14746 738 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 IMMTQ16891 758 aaKnown RBP12.66□□□□□ -0.38
LINC00239-201ENST00000556973 AKNAD1Q5T1N1 836 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 FBXO46Q6PJ61 603 aaPredicted RBP12.66□□□□□ -0.38
LINC00239-201ENST00000556973 SKAP1Q86WV1 359 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 CLEC10AQ8IUN9 316 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 CEP95Q96GE4 821 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 IL25Q9H293 177 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 RNF41Q9H4P4 317 aaPredicted RBP12.66□□□□□ -0.38
LINC00239-201ENST00000556973 RPAP3Q9H6T3 665 aaPredicted RBP12.66□□□□□ -0.38
LINC00239-201ENST00000556973 GOPCQ9HD26 462 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 MORF4L1Q9UBU8 362 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 SYNPO2Q9UMS6 1093 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 TACC3Q9Y6A5 838 aa12.66□□□□□ -0.38
LINC00239-201ENST00000556973 WDR46O15213 610 aaKnown RBP12.65□□□□□ -0.38
LINC00239-201ENST00000556973 SGSM2O43147 1006 aa12.65□□□□□ -0.38
LINC00239-201ENST00000556973 FMNL1O95466 1100 aaPredicted RBP12.65□□□□□ -0.38
LINC00239-201ENST00000556973 PRMT2P55345 433 aa12.65□□□□□ -0.38
LINC00239-201ENST00000556973 FCGRTP55899 365 aa12.65□□□□□ -0.38
LINC00239-201ENST00000556973 CAP1Q01518 475 aa12.65□□□□□ -0.38
LINC00239-201ENST00000556973 FAM110CQ1W6H9 321 aa12.65□□□□□ -0.38
LINC00239-201ENST00000556973 KIAA1755Q5JYT7 1200 aa12.65□□□□□ -0.38
LINC00239-201ENST00000556973 GPRC5AQ8NFJ5 357 aa12.65□□□□□ -0.38
LINC00239-201ENST00000556973 STAG1Q8WVM7 1258 aa12.65□□□□□ -0.38
LINC00239-201ENST00000556973 ABHD8Q96I13 439 aa12.65□□□□□ -0.38
LINC00239-201ENST00000556973 ARHGAP39Q9C0H5 1083 aa12.65□□□□□ -0.38
LINC00239-201ENST00000556973 TOMM22Q9NS69 142 aa12.65□□□□□ -0.38
LINC00239-201ENST00000556973 RBPJLQ9UBG7 517 aa12.65□□□□□ -0.38
LINC00239-201ENST00000556973 PTPN22Q9Y2R2 807 aa12.65□□□□□ -0.38
LINC00239-201ENST00000556973 F5H6K3 240 aa12.64□□□□□ -0.39
LINC00239-201ENST00000556973 CTGFP29279 349 aa12.64□□□□□ -0.39
LINC00239-201ENST00000556973 KLRC3Q07444 240 aa12.64□□□□□ -0.39
LINC00239-201ENST00000556973 RRP12Q5JTH9 1297 aaKnown RBP12.64□□□□□ -0.39
LINC00239-201ENST00000556973 LBX2Q6XYB7 198 aa12.64□□□□□ -0.39
LINC00239-201ENST00000556973 SPICE1Q8N0Z3 855 aa12.64□□□□□ -0.39
LINC00239-201ENST00000556973 TRIM47Q96LD4 638 aa12.64□□□□□ -0.39
LINC00239-201ENST00000556973 TANGO6Q9C0B7 1094 aa12.64□□□□□ -0.39
LINC00239-201ENST00000556973 NBPF3Q9H094 633 aa12.64□□□□□ -0.39
LINC00239-201ENST00000556973 TCP11L1Q9NUJ3 509 aa12.64□□□□□ -0.39
LINC00239-201ENST00000556973 RABGAP1Q9Y3P9 1069 aa12.64□□□□□ -0.39
LINC00239-201ENST00000556973 ZSWIM8A7E2V4 1837 aa12.64□□□□□ -0.39
LINC00239-201ENST00000556973 PARP14Q460N5 1801 aa12.63□□□□□ -0.39
LINC00239-201ENST00000556973 RAD21O60216 631 aa12.63□□□□□ -0.39
LINC00239-201ENST00000556973 NOVP48745 357 aa12.63□□□□□ -0.39
LINC00239-201ENST00000556973 PTH1RQ03431 593 aa12.63□□□□□ -0.39
LINC00239-201ENST00000556973 Q3C1V9 767 aa12.63□□□□□ -0.39
LINC00239-201ENST00000556973 CASC1Q6TDU7 716 aa12.63□□□□□ -0.39
LINC00239-201ENST00000556973 KIAA1211Q6ZU35 1233 aa12.63□□□□□ -0.39
LINC00239-201ENST00000556973 GMCL1P1Q8NEA9 526 aa12.63□□□□□ -0.39
LINC00239-201ENST00000556973 ESR2Q92731 530 aa12.63□□□□□ -0.39
LINC00239-201ENST00000556973 MAP4K1Q92918 833 aa12.63□□□□□ -0.39
LINC00239-201ENST00000556973 TTC14Q96N46 770 aa12.63□□□□□ -0.39
LINC00239-201ENST00000556973 TXNRD2Q9NNW7 524 aa12.63□□□□□ -0.39
LINC00239-201ENST00000556973 IL17RBQ9NRM6 502 aa12.63□□□□□ -0.39
LINC00239-201ENST00000556973 U3KPZ7 1027 aaPredicted RBP12.63□□□□□ -0.39
LINC00239-201ENST00000556973 MYPNQ86TC9 1320 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 RLFQ13129 1914 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 TNPO2O14787 897 aaKnown RBP12.62□□□□□ -0.39
LINC00239-201ENST00000556973 FLOT1O75955 427 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 ECM2O94769 699 aaPredicted RBP12.62□□□□□ -0.39
LINC00239-201ENST00000556973 NDUFB10O96000 172 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 DSG3P32926 999 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 ERVK-9P63128 1117 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 ERVK-24P63145 666 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 IFFO2Q5TF58 517 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 POTEEQ6S8J3 1075 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 TBC1D10CQ8IV04 446 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 COA7Q96BR5 231 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 ESYT1Q9BSJ8 1104 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 CNNM2Q9H8M5 875 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 SRRDQ9UH36 339 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 STX8Q9UNK0 236 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 HPS5Q9UPZ3 1129 aa12.62□□□□□ -0.39
LINC00239-201ENST00000556973 SPDYE16A6NNV3 312 aaPredicted RBP12.61□□□□□ -0.39
LINC00239-201ENST00000556973 NMT2O60551 498 aa12.61□□□□□ -0.39
LINC00239-201ENST00000556973 CCNA1P78396 465 aa12.61□□□□□ -0.39
LINC00239-201ENST00000556973 CCDC178Q5BJE1 867 aa12.61□□□□□ -0.39
LINC00239-201ENST00000556973 FAM83BQ5T0W9 1011 aa12.61□□□□□ -0.39
LINC00239-201ENST00000556973 SLFN13Q68D06 897 aa12.61□□□□□ -0.39
LINC00239-201ENST00000556973 MB21D1Q8N884 522 aa12.61□□□□□ -0.39
LINC00239-201ENST00000556973 PAGR1Q9BTK6 254 aa12.61□□□□□ -0.39
LINC00239-201ENST00000556973 KRT23Q9C075 422 aa12.61□□□□□ -0.39
LINC00239-201ENST00000556973 ADAMTS5Q9UNA0 930 aa12.61□□□□□ -0.39
LINC00239-201ENST00000556973 CCDC85CA6NKD9 419 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 CDC45O75419 566 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 CNMDO75829 334 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 CYP21A2P08686 494 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 TOP1P11387 765 aaKnown RBP12.6□□□□□ -0.39
LINC00239-201ENST00000556973 BMP3P12645 472 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms