RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 ZFYVE28Q9HCC9 887 aa20.65■□□□□ 0.9
SHMT2-225ENST00000556798 STX8Q9UNK0 236 aa20.65■□□□□ 0.9
SHMT2-225ENST00000556798 CFHR5Q9BXR6 569 aa20.64■□□□□ 0.89
SHMT2-225ENST00000556798 KRT23Q9C075 422 aa20.64■□□□□ 0.89
SHMT2-225ENST00000556798 CNNM2Q9H8M5 875 aa20.64■□□□□ 0.89
SHMT2-225ENST00000556798 SLC45A1Q9Y2W3 748 aa20.64■□□□□ 0.89
SHMT2-225ENST00000556798 COL11A1P12107 1806 aaPredicted RBP20.64■□□□□ 0.89
SHMT2-225ENST00000556798 MGAMO43451 1857 aa20.63■□□□□ 0.89
SHMT2-225ENST00000556798 ADGRA2Q96PE1 1338 aa20.63■□□□□ 0.89
SHMT2-225ENST00000556798 REC8O95072 547 aa20.63■□□□□ 0.89
SHMT2-225ENST00000556798 ASCC2Q9H1I8 757 aaPredicted RBP20.63■□□□□ 0.89
SHMT2-225ENST00000556798 RPAP3Q9H6T3 665 aaPredicted RBP20.63■□□□□ 0.89
SHMT2-225ENST00000556798 GOPCQ9HD26 462 aa20.63■□□□□ 0.89
SHMT2-225ENST00000556798 IRX3P78415 501 aaPredicted RBP20.62■□□□□ 0.89
SHMT2-225ENST00000556798 TRDNQ13061 729 aa20.62■□□□□ 0.89
SHMT2-225ENST00000556798 PABPC4Q13310 644 aaKnown RBP eCLIP20.62■□□□□ 0.896e-6■■■■■ 28.1
SHMT2-225ENST00000556798 CYB5R4Q7L1T6 521 aa20.62■□□□□ 0.89
SHMT2-225ENST00000556798 CHMP4CQ96CF2 233 aa20.62■□□□□ 0.89
SHMT2-225ENST00000556798 ZSWIM5Q9P217 1185 aa20.62■□□□□ 0.89
SHMT2-225ENST00000556798 PNMA3Q9UL41 463 aa20.62■□□□□ 0.89
SHMT2-225ENST00000556798 GPR25O00155 361 aa20.61■□□□□ 0.89
SHMT2-225ENST00000556798 TLR2O60603 784 aa20.61■□□□□ 0.89
SHMT2-225ENST00000556798 NDUFB10O96000 172 aa20.61■□□□□ 0.89
SHMT2-225ENST00000556798 OSBPP22059 807 aa20.61■□□□□ 0.89
SHMT2-225ENST00000556798 RALYLQ86SE5 291 aaKnown RBP20.61■□□□□ 0.89
SHMT2-225ENST00000556798 NCOA7Q8NI08 942 aa20.61■□□□□ 0.89
SHMT2-225ENST00000556798 SMCR8Q8TEV9 937 aaPredicted RBP20.61■□□□□ 0.89
SHMT2-225ENST00000556798 LPAR1Q92633 364 aa20.61■□□□□ 0.89
SHMT2-225ENST00000556798 MKL1Q969V6 931 aa20.61■□□□□ 0.89
SHMT2-225ENST00000556798 NUP88Q99567 741 aaPredicted RBP20.61■□□□□ 0.89
SHMT2-225ENST00000556798 TANGO6Q9C0B7 1094 aa20.61■□□□□ 0.89
SHMT2-225ENST00000556798 TCP11L1Q9NUJ3 509 aa20.61■□□□□ 0.89
SHMT2-225ENST00000556798 CPA4Q9UI42 421 aa20.61■□□□□ 0.89
SHMT2-225ENST00000556798 A0A0G2JMZ2 1700 aa20.61■□□□□ 0.89
SHMT2-225ENST00000556798 USP17L15C9J2P7 530 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 USP17L13C9JLJ4 530 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 USP17L11C9JVI0 530 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 USP17L18D6R9N7 530 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 USP17L22D6RA61 530 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 USP17L17D6RBQ6 530 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 USP17L19D6RCP7 530 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 USP17L20D6RJB6 530 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 F5H6K3 240 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 HOXA7P31268 230 aaPredicted RBP20.6■□□□□ 0.89
SHMT2-225ENST00000556798 NOVP48745 357 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 KLRC3Q07444 240 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 USP17L24Q0WX57 530 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 RNF20Q5VTR2 975 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 RCSD1Q6JBY9 416 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 RASGRP2Q7LDG7 609 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 IQCA1Q86XH1 822 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 RASEFQ8IZ41 740 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 MTMR7Q9Y216 660 aa20.6■□□□□ 0.89
SHMT2-225ENST00000556798 TNKSO95271 1327 aa20.59■□□□□ 0.89
SHMT2-225ENST00000556798 WDR46O15213 610 aaKnown RBP20.59■□□□□ 0.89
SHMT2-225ENST00000556798 NT5C2P49902 561 aa20.59■□□□□ 0.89
SHMT2-225ENST00000556798 COL9A3Q14050 684 aaPredicted RBP20.59■□□□□ 0.89
SHMT2-225ENST00000556798 PPP4R3BQ5MIZ7 849 aa20.59■□□□□ 0.89
SHMT2-225ENST00000556798 FAM83BQ5T0W9 1011 aa20.59■□□□□ 0.89
SHMT2-225ENST00000556798 CATSPERGQ6ZRH7 1159 aa20.59■□□□□ 0.89
SHMT2-225ENST00000556798 CHST3Q7LGC8 479 aa20.59■□□□□ 0.89
SHMT2-225ENST00000556798 MB21D2Q8IYB1 491 aaPredicted RBP20.59■□□□□ 0.89
SHMT2-225ENST00000556798 ZNF296Q8WUU4 475 aaPredicted RBP20.59■□□□□ 0.89
SHMT2-225ENST00000556798 ZSCAN10Q96SZ4 725 aaPredicted RBP20.59■□□□□ 0.89
SHMT2-225ENST00000556798 P2RX7Q99572 595 aaKnown RBP20.59■□□□□ 0.89
SHMT2-225ENST00000556798 TMEM47Q9BQJ4 181 aa20.59■□□□□ 0.89
SHMT2-225ENST00000556798 UBAC1Q9BSL1 405 aa20.59■□□□□ 0.89
SHMT2-225ENST00000556798 HSPA4P34932 840 aa20.58■□□□□ 0.89
SHMT2-225ENST00000556798 SLFN13Q68D06 897 aa20.58■□□□□ 0.89
SHMT2-225ENST00000556798 C17orf99Q6UX52 265 aa20.58■□□□□ 0.89
SHMT2-225ENST00000556798 GMCL1P1Q8NEA9 526 aa20.58■□□□□ 0.89
SHMT2-225ENST00000556798 SYNPO2Q9UMS6 1093 aa20.58■□□□□ 0.89
SHMT2-225ENST00000556798 PEX10O60683 326 aa20.57■□□□□ 0.88
SHMT2-225ENST00000556798 ECM2O94769 699 aaPredicted RBP20.57■□□□□ 0.88
SHMT2-225ENST00000556798 TOP1P11387 765 aaKnown RBP20.57■□□□□ 0.88
SHMT2-225ENST00000556798 ANTXR2P58335 489 aa20.57■□□□□ 0.88
SHMT2-225ENST00000556798 HERVK_113P62684 666 aa20.57■□□□□ 0.88
SHMT2-225ENST00000556798 SAMD1Q6SPF0 538 aaPredicted RBP20.57■□□□□ 0.88
SHMT2-225ENST00000556798 ANKRD13CQ8N6S4 541 aa20.57■□□□□ 0.88
SHMT2-225ENST00000556798 ENAHQ8N8S7 591 aaPredicted RBP20.57■□□□□ 0.88
SHMT2-225ENST00000556798 FKTNO75072 461 aa20.56■□□□□ 0.88
SHMT2-225ENST00000556798 FLOT1O75955 427 aa20.56■□□□□ 0.88
SHMT2-225ENST00000556798 ADCK5Q3MIX3 580 aa20.56■□□□□ 0.88
SHMT2-225ENST00000556798 USP26Q9BXU7 913 aa20.56■□□□□ 0.88
SHMT2-225ENST00000556798 FBXO28Q9NVF7 368 aa20.56■□□□□ 0.88
SHMT2-225ENST00000556798 ISY1Q9ULR0 285 aaKnown RBP20.56■□□□□ 0.88
SHMT2-225ENST00000556798 DOCK3Q8IZD9 2030 aa20.55■□□□□ 0.88
SHMT2-225ENST00000556798 SPDYE16A6NNV3 312 aaPredicted RBP20.55■□□□□ 0.88
SHMT2-225ENST00000556798 BCRP11274 1271 aa20.55■□□□□ 0.88
SHMT2-225ENST00000556798 ZKSCAN1P17029 563 aaPredicted RBP20.55■□□□□ 0.88
SHMT2-225ENST00000556798 MCCP23508 829 aa20.55■□□□□ 0.88
SHMT2-225ENST00000556798 SP3Q02447 781 aa20.55■□□□□ 0.88
SHMT2-225ENST00000556798 C8orf34Q49A92 452 aa20.55■□□□□ 0.88
SHMT2-225ENST00000556798 CCDC178Q5BJE1 867 aa20.55■□□□□ 0.88
SHMT2-225ENST00000556798 NOM1Q5C9Z4 860 aaKnown RBP20.55■□□□□ 0.88
SHMT2-225ENST00000556798 POTEEQ6S8J3 1075 aa20.55■□□□□ 0.88
SHMT2-225ENST00000556798 DGKHQ86XP1 1220 aa20.55■□□□□ 0.88
SHMT2-225ENST00000556798 TTC14Q96N46 770 aa20.55■□□□□ 0.88
SHMT2-225ENST00000556798 PAGR1Q9BTK6 254 aa20.55■□□□□ 0.88
SHMT2-225ENST00000556798 IFIT3O14879 490 aaKnown RBP20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms