RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 USP17L22D6RA61 530 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 USP17L17D6RBQ6 530 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 USP17L19D6RCP7 530 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 USP17L20D6RJB6 530 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 APPP05067 770 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 GNAT2P19087 354 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 FLT3LGP49771 235 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 CAP1Q01518 475 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 PRKCZQ05513 592 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 USP17L24Q0WX57 530 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 ZYXQ15942 572 aaKnown RBP8.78□□□□□ -1
SCFD1-222ENST00000556768 ANKRD45Q5TZF3 282 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 TMEM179Q6ZVK1 233 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 GCC1Q96CN9 775 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 CCDC17Q96LX7 622 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 P2RX7Q99572 595 aaKnown RBP8.78□□□□□ -1
SCFD1-222ENST00000556768 KIAA1683Q9H0B3 1180 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 PCDHB15Q9Y5E8 787 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 POTEFA5A3E0 1075 aa8.77□□□□□ -1
SCFD1-222ENST00000556768 USP17L12C9JPN9 530 aa8.77□□□□□ -1
SCFD1-222ENST00000556768 USP17L21D6R901 530 aa8.77□□□□□ -1
SCFD1-222ENST00000556768 ADCY3O60266 1144 aa8.77□□□□□ -1
SCFD1-222ENST00000556768 EN2P19622 333 aaPredicted RBP8.77□□□□□ -1
SCFD1-222ENST00000556768 HERVK_113P62684 666 aa8.77□□□□□ -1
SCFD1-222ENST00000556768 CCNA1P78396 465 aa8.77□□□□□ -1
SCFD1-222ENST00000556768 PXYLP1Q8TE99 480 aa8.77□□□□□ -1
SCFD1-222ENST00000556768 NACAP1Q9BZK3 213 aa8.77□□□□□ -1
SCFD1-222ENST00000556768 RNF208Q9H0X6 261 aa8.77□□□□□ -1
SCFD1-222ENST00000556768 MKNK2Q9HBH9 465 aa8.77□□□□□ -1
SCFD1-222ENST00000556768 HOXC10Q9NYD6 342 aa8.77□□□□□ -1
SCFD1-222ENST00000556768 RNF113AO15541 343 aaKnown RBP8.77□□□□□ -1.01
SCFD1-222ENST00000556768 PRKAB2O43741 272 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 CAPN2P17655 700 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 MX1P20591 662 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 CTGFP29279 349 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 MAPK4P31152 587 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 SHMT1P34896 483 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 JAG1P78504 1218 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 GABPAQ06546 454 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 IRF5Q13568 498 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 SKIV2LQ15477 1246 aaKnown RBP8.77□□□□□ -1.01
SCFD1-222ENST00000556768 C12orf60Q5U649 245 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 GIMAP6Q6P9H5 292 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 SP7Q8TDD2 431 aaPredicted RBP8.77□□□□□ -1.01
SCFD1-222ENST00000556768 APPBP2Q92624 585 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 CRBNQ96SW2 442 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 PUS7LQ9H0K6 701 aaKnown RBP8.77□□□□□ -1.01
SCFD1-222ENST00000556768 RWDD1Q9H446 243 aaPredicted RBP8.77□□□□□ -1.01
SCFD1-222ENST00000556768 ARHGEF10LQ9HCE6 1279 aa8.77□□□□□ -1.01
SCFD1-222ENST00000556768 ARPP21Q9UBL0 812 aaPredicted RBP8.77□□□□□ -1.01
SCFD1-222ENST00000556768 SEPT2Q15019 361 aa8.76□□□□□ -1.01
SCFD1-222ENST00000556768 TSHZ3Q63HK5 1081 aa8.76□□□□□ -1.01
SCFD1-222ENST00000556768 LPAR1Q92633 364 aa8.76□□□□□ -1.01
SCFD1-222ENST00000556768 C12orf42Q96LP6 360 aa8.76□□□□□ -1.01
SCFD1-222ENST00000556768 NUDT12Q9BQG2 462 aa8.76□□□□□ -1.01
SCFD1-222ENST00000556768 PAGR1Q9BTK6 254 aa8.76□□□□□ -1.01
SCFD1-222ENST00000556768 FSD1Q9BTV5 496 aa8.76□□□□□ -1.01
SCFD1-222ENST00000556768 MORF4L1Q9UBU8 362 aa8.76□□□□□ -1.01
SCFD1-222ENST00000556768 BOLA1Q9Y3E2 137 aa8.76□□□□□ -1.01
SCFD1-222ENST00000556768 OTOFQ9HC10 1997 aa8.76□□□□□ -1.01
SCFD1-222ENST00000556768 MINDY4BA8MYZ0 360 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 GJB1P08034 283 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 SLC3A2P08195 630 aaKnown RBP8.75□□□□□ -1.01
SCFD1-222ENST00000556768 CCL5P13501 91 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 CLCN1P35523 988 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 TDO2P48775 406 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 CDK8P49336 464 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 ERVK-9P63128 1117 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 ERVK-24P63145 666 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 ATP2B2Q01814 1243 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 HDAC1Q13547 482 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-222ENST00000556768 SHROOM1Q2M3G4 852 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-222ENST00000556768 SLFNL1Q499Z3 407 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 PRPF38BQ5VTL8 546 aaKnown RBP8.75□□□□□ -1.01
SCFD1-222ENST00000556768 CATSPERGQ6ZRH7 1159 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 TRMT44Q8IYL2 757 aaKnown RBP8.75□□□□□ -1.01
SCFD1-222ENST00000556768 SOCS4Q8WXH5 440 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 DYNLL2Q96FJ2 89 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 STRBPQ96SI9 672 aaKnown RBP8.75□□□□□ -1.01
SCFD1-222ENST00000556768 TANGO6Q9C0B7 1094 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 KANSL2Q9H9L4 492 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 GABRQQ9UN88 632 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 RABGAP1Q9Y3P9 1069 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 IVNS1ABPQ9Y6Y0 642 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 GPAA1O43292 621 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 CYP2D6P10635 497 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 VCAM1P19320 739 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 ICA1Q05084 483 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 COG2Q14746 738 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 WDR78Q5VTH9 848 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 CTR9Q6PD62 1173 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 C16orf86Q6ZW13 317 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 ZNF444Q8N0Y2 327 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-222ENST00000556768 ACER1Q8TDN7 264 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 POM121Q96HA1 1249 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 TRAIPQ9BWF2 469 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 RPAP3Q9H6T3 665 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-222ENST00000556768 RBPJLQ9UBG7 517 aa8.75□□□□□ -1.01
SCFD1-222ENST00000556768 PATL2C9JE40 543 aaKnown RBP8.74□□□□□ -1.01
SCFD1-222ENST00000556768 RAD21O60216 631 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms