RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 LTKP29376 864 aa6.93□□□□□ -1.3
SCFD1-219ENST00000556413 TNNI2P48788 182 aa6.93□□□□□ -1.3
SCFD1-219ENST00000556413 KCNA10Q16322 511 aa6.93□□□□□ -1.3
SCFD1-219ENST00000556413 TIGD5Q53EQ6 642 aa6.93□□□□□ -1.3
SCFD1-219ENST00000556413 FBXO33Q7Z6M2 555 aa6.93□□□□□ -1.3
SCFD1-219ENST00000556413 BAHD1Q8TBE0 780 aaPredicted RBP6.93□□□□□ -1.3
SCFD1-219ENST00000556413 CRELD1Q96HD1 420 aa6.93□□□□□ -1.3
SCFD1-219ENST00000556413 KREMEN1Q96MU8 473 aa6.93□□□□□ -1.3
SCFD1-219ENST00000556413 TMEM74Q96NL1 305 aa6.93□□□□□ -1.3
SCFD1-219ENST00000556413 SLC26A8Q96RN1 970 aa6.93□□□□□ -1.3
SCFD1-219ENST00000556413 TCAF2A6NFQ2 919 aa6.92□□□□□ -1.3
SCFD1-219ENST00000556413 HTR3BO95264 441 aa6.92□□□□□ -1.3
SCFD1-219ENST00000556413 AMIGO3Q86WK7 504 aa6.92□□□□□ -1.3
SCFD1-219ENST00000556413 LILRA2Q8N149 483 aa6.92□□□□□ -1.3
SCFD1-219ENST00000556413 OXR1Q8N573 874 aa6.92□□□□□ -1.3
SCFD1-219ENST00000556413 KCNN1Q92952 543 aa6.92□□□□□ -1.3
SCFD1-219ENST00000556413 CCDC74BQ96LY2 380 aa6.92□□□□□ -1.3
SCFD1-219ENST00000556413 RSRP1Q9BUV0 290 aa6.92□□□□□ -1.3
SCFD1-219ENST00000556413 KLHL3Q9UH77 587 aa6.92□□□□□ -1.3
SCFD1-219ENST00000556413 SMG5Q9UPR3 1016 aaKnown RBP6.92□□□□□ -1.3
SCFD1-219ENST00000556413 RBM47A0AV96 593 aaKnown RBP6.91□□□□□ -1.3
SCFD1-219ENST00000556413 SHISA3A0PJX4 238 aa6.91□□□□□ -1.3
SCFD1-219ENST00000556413 FITM1A5D6W6 292 aa6.91□□□□□ -1.3
SCFD1-219ENST00000556413 GRIN3BO60391 1043 aa6.91□□□□□ -1.3
SCFD1-219ENST00000556413 DNAJA2O60884 412 aa6.91□□□□□ -1.3
SCFD1-219ENST00000556413 GBP2P32456 591 aaPredicted RBP6.91□□□□□ -1.3
SCFD1-219ENST00000556413 FAM160A1Q05DH4 1040 aa6.91□□□□□ -1.3
SCFD1-219ENST00000556413 NR0B2Q15466 257 aa6.91□□□□□ -1.3
SCFD1-219ENST00000556413 RELL1Q8IUW5 271 aa6.91□□□□□ -1.3
SCFD1-219ENST00000556413 AEBP1Q8IUX7 1158 aa6.91□□□□□ -1.3
SCFD1-219ENST00000556413 DHX38Q92620 1227 aaKnown RBP6.91□□□□□ -1.3
SCFD1-219ENST00000556413 ASPNQ9BXN1 380 aa6.91□□□□□ -1.3
SCFD1-219ENST00000556413 EBF1Q9UH73 591 aa6.91□□□□□ -1.3
SCFD1-219ENST00000556413 SORBS3O60504 671 aa6.9□□□□□ -1.3
SCFD1-219ENST00000556413 TAGLNQ01995 201 aaKnown RBP6.9□□□□□ -1.3
SCFD1-219ENST00000556413 TEKQ02763 1124 aa6.9□□□□□ -1.3
SCFD1-219ENST00000556413 IRF2BP1Q8IU81 584 aa6.9□□□□□ -1.3
SCFD1-219ENST00000556413 PHACTR4Q8IZ21 702 aa6.9□□□□□ -1.3
SCFD1-219ENST00000556413 FBXO27Q8NI29 283 aa6.9□□□□□ -1.3
SCFD1-219ENST00000556413 VWCEQ96DN2 955 aa6.9□□□□□ -1.3
SCFD1-219ENST00000556413 KIF2CQ99661 725 aa6.9□□□□□ -1.3
SCFD1-219ENST00000556413 SLC6A17Q9H1V8 727 aa6.9□□□□□ -1.3
SCFD1-219ENST00000556413 MINDY4BA8MYZ0 360 aa6.89□□□□□ -1.31
SCFD1-219ENST00000556413 MPP2Q14168 576 aa6.89□□□□□ -1.31
SCFD1-219ENST00000556413 CIAPIN1Q6FI81 312 aa6.89□□□□□ -1.31
SCFD1-219ENST00000556413 REC114Q7Z4M0 266 aa6.89□□□□□ -1.31
SCFD1-219ENST00000556413 GOLM1Q8NBJ4 401 aa6.89□□□□□ -1.31
SCFD1-219ENST00000556413 SYTL4Q96C24 671 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-219ENST00000556413 MCOLN1Q9GZU1 580 aa6.89□□□□□ -1.31
SCFD1-219ENST00000556413 CWC22Q9HCG8 908 aaKnown RBP6.89□□□□□ -1.31
SCFD1-219ENST00000556413 YBX2Q9Y2T7 364 aaKnown RBP6.89□□□□□ -1.31
SCFD1-219ENST00000556413 ZNF281Q9Y2X9 895 aa6.89□□□□□ -1.31
SCFD1-219ENST00000556413 GARTP22102 1010 aa6.88□□□□□ -1.31
SCFD1-219ENST00000556413 LINC00310P59036 64 aa6.88□□□□□ -1.31
SCFD1-219ENST00000556413 PWP1Q13610 501 aa6.88□□□□□ -1.31
SCFD1-219ENST00000556413 SNAP47Q5SQN1 464 aa6.88□□□□□ -1.31
SCFD1-219ENST00000556413 LILRA6Q6PI73 481 aa6.88□□□□□ -1.31
SCFD1-219ENST00000556413 TTLL10Q6ZVT0 673 aa6.88□□□□□ -1.31
SCFD1-219ENST00000556413 ZNF605Q86T29 641 aa6.88□□□□□ -1.31
SCFD1-219ENST00000556413 SPPL2CQ8IUH8 684 aa6.88□□□□□ -1.31
SCFD1-219ENST00000556413 INTS4Q96HW7 963 aaKnown RBP6.88□□□□□ -1.31
SCFD1-219ENST00000556413 MYOCOSA0A1B0GUC4 107 aa6.87□□□□□ -1.31
SCFD1-219ENST00000556413 CHRNEQ04844 493 aa6.87□□□□□ -1.31
SCFD1-219ENST00000556413 DUSP4Q13115 394 aa6.87□□□□□ -1.31
SCFD1-219ENST00000556413 CLEC16AQ2KHT3 1053 aa6.87□□□□□ -1.31
SCFD1-219ENST00000556413 ANKS4BQ8N8V4 417 aa6.87□□□□□ -1.31
SCFD1-219ENST00000556413 LINC01599Q8WXQ3 324 aa6.87□□□□□ -1.31
SCFD1-219ENST00000556413 SHISA4Q96DD7 197 aa6.87□□□□□ -1.31
SCFD1-219ENST00000556413 G6PC3Q9BUM1 346 aa6.87□□□□□ -1.31
SCFD1-219ENST00000556413 MRS2Q9HD23 443 aa6.87□□□□□ -1.31
SCFD1-219ENST00000556413 VTI1BQ9UEU0 232 aa6.87□□□□□ -1.31
SCFD1-219ENST00000556413 GPR160Q9UJ42 338 aa6.87□□□□□ -1.31
SCFD1-219ENST00000556413 NUAK1O60285 661 aa6.86□□□□□ -1.31
SCFD1-219ENST00000556413 PSPNO60542 156 aa6.86□□□□□ -1.31
SCFD1-219ENST00000556413 GBP1P32455 592 aa6.86□□□□□ -1.31
SCFD1-219ENST00000556413 SNX17Q15036 470 aa6.86□□□□□ -1.31
SCFD1-219ENST00000556413 FAM196AQ6ZSG2 479 aa6.86□□□□□ -1.31
SCFD1-219ENST00000556413 ZNF552Q9H707 407 aaPredicted RBP6.86□□□□□ -1.31
SCFD1-219ENST00000556413 SLC22A31A6NKX4 558 aa6.85□□□□□ -1.31
SCFD1-219ENST00000556413 NOTOA8MTQ0 251 aa6.85□□□□□ -1.31
SCFD1-219ENST00000556413 RGS13O14921 159 aa6.85□□□□□ -1.31
SCFD1-219ENST00000556413 TLR3O15455 904 aaKnown RBP6.85□□□□□ -1.31
SCFD1-219ENST00000556413 PEX10O60683 326 aa6.85□□□□□ -1.31
SCFD1-219ENST00000556413 UBOX5O94941 541 aa6.85□□□□□ -1.31
SCFD1-219ENST00000556413 GALK1P51570 392 aa6.85□□□□□ -1.31
SCFD1-219ENST00000556413 DLG4P78352 724 aa6.85□□□□□ -1.31
SCFD1-219ENST00000556413 NMIQ13287 307 aaPredicted RBP6.85□□□□□ -1.31
SCFD1-219ENST00000556413 USHBP1Q8N6Y0 703 aa6.85□□□□□ -1.31
SCFD1-219ENST00000556413 ENOX1Q8TC92 643 aaKnown RBP6.85□□□□□ -1.31
SCFD1-219ENST00000556413 SYTL5Q8TDW5 730 aaPredicted RBP6.85□□□□□ -1.31
SCFD1-219ENST00000556413 HDAC8Q9BY41 377 aa6.85□□□□□ -1.31
SCFD1-219ENST00000556413 KRTAP4-2Q9BYR5 136 aa6.85□□□□□ -1.31
SCFD1-219ENST00000556413 KBTBD4Q9NVX7 518 aa6.85□□□□□ -1.31
SCFD1-219ENST00000556413 SEMA7AO75326 666 aa6.84□□□□□ -1.31
SCFD1-219ENST00000556413 PDE6BP35913 854 aa6.84□□□□□ -1.31
SCFD1-219ENST00000556413 CHMP4BP1P59074 171 aa6.84□□□□□ -1.31
SCFD1-219ENST00000556413 ARSHQ5FYA8 562 aa6.84□□□□□ -1.31
SCFD1-219ENST00000556413 FBXL19Q6PCT2 694 aa6.84□□□□□ -1.31
SCFD1-219ENST00000556413 ERMP1Q7Z2K6 904 aa6.84□□□□□ -1.31
SCFD1-219ENST00000556413 IRF2BPLQ9H1B7 796 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms