RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 DGKHQ86XP1 1220 aa11.84□□□□□ -0.51
NEK9-205ENST00000555405 AGXT2Q9BYV1 514 aa11.84□□□□□ -0.51
NEK9-205ENST00000555405 TAF1DQ9H5J8 278 aaPredicted RBP11.84□□□□□ -0.51
NEK9-205ENST00000555405 KANSL2Q9H9L4 492 aa11.84□□□□□ -0.51
NEK9-205ENST00000555405 TROAPQ12815 778 aa11.84□□□□□ -0.51
NEK9-205ENST00000555405 CDC37L1Q7L3B6 337 aa11.84□□□□□ -0.51
NEK9-205ENST00000555405 ZNF341Q9BYN7 854 aa11.84□□□□□ -0.51
NEK9-205ENST00000555405 HERC5Q9UII4 1024 aaKnown RBP11.84□□□□□ -0.51
NEK9-205ENST00000555405 IQCA1LA6NCM1 817 aa11.84□□□□□ -0.51
NEK9-205ENST00000555405 FGRP09769 529 aa11.84□□□□□ -0.51
NEK9-205ENST00000555405 KIF5BP33176 963 aa11.84□□□□□ -0.51
NEK9-205ENST00000555405 SLFN13Q68D06 897 aa11.84□□□□□ -0.51
NEK9-205ENST00000555405 GPKOWQ92917 476 aaPredicted RBP eCLIP11.84□□□□□ -0.51
NEK9-205ENST00000555405 ZBED3Q96IU2 234 aaPredicted RBP11.84□□□□□ -0.51
NEK9-205ENST00000555405 PICK1Q9NRD5 415 aa11.84□□□□□ -0.51
NEK9-205ENST00000555405 FAM217BQ9NTX9 383 aaPredicted RBP11.84□□□□□ -0.51
NEK9-205ENST00000555405 VPS54Q9P1Q0 977 aa11.84□□□□□ -0.51
NEK9-205ENST00000555405 KIF3AQ9Y496 699 aa11.84□□□□□ -0.51
NEK9-205ENST00000555405 CDKL5O76039 1030 aa11.83□□□□□ -0.52
NEK9-205ENST00000555405 SPP2Q13103 211 aa11.83□□□□□ -0.52
NEK9-205ENST00000555405 TMEM179Q6ZVK1 233 aa11.83□□□□□ -0.52
NEK9-205ENST00000555405 SRBD1Q8N5C6 995 aaKnown RBP11.83□□□□□ -0.52
NEK9-205ENST00000555405 ALDH8A1Q9H2A2 487 aaPredicted RBP11.83□□□□□ -0.52
NEK9-205ENST00000555405 ZBTB21Q9ULJ3 1066 aa11.83□□□□□ -0.52
NEK9-205ENST00000555405 VEGFAP15692 232 aaPredicted RBP11.83□□□□□ -0.52
NEK9-205ENST00000555405 SUPT20HL1Q3ZLR7 823 aa11.83□□□□□ -0.52
NEK9-205ENST00000555405 DCAF15Q66K64 600 aa11.83□□□□□ -0.52
NEK9-205ENST00000555405 HEATR3Q7Z4Q2 680 aa11.83□□□□□ -0.52
NEK9-205ENST00000555405 ZHX2Q9Y6X8 837 aa11.83□□□□□ -0.52
NEK9-205ENST00000555405 F5H6K3 240 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 PPP1R12BO60237 982 aaPredicted RBP11.82□□□□□ -0.52
NEK9-205ENST00000555405 FDPSP14324 419 aaKnown RBP11.82□□□□□ -0.52
NEK9-205ENST00000555405 NF2P35240 595 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 HMGN5P82970 282 aaKnown RBP11.82□□□□□ -0.52
NEK9-205ENST00000555405 KLRC3Q07444 240 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 CCDC178Q5BJE1 867 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 TEPSINQ96N21 525 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 EHD4Q9H223 541 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 MYH1P12882 1939 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 BRCA1P38398 1863 aaKnown RBP11.82□□□□□ -0.52
NEK9-205ENST00000555405 A0A1W2PRG0 241 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 FIBPO43427 364 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 PDCP20941 246 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 CAP2P40123 477 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 TMEM232C9JQI7 657 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 NFKBIBQ15653 356 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 CNKSR2Q8WXI2 1034 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 ARHGEF10LQ9HCE6 1279 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 ZDHHC9Q9Y397 364 aa11.82□□□□□ -0.52
NEK9-205ENST00000555405 WDR19Q8NEZ3 1342 aa11.81□□□□□ -0.52
NEK9-205ENST00000555405 WDR33Q9C0J8 1336 aaKnown RBP11.81□□□□□ -0.52
NEK9-205ENST00000555405 CALM1P0DP23 149 aa11.81□□□□□ -0.52
NEK9-205ENST00000555405 CALM2P0DP24 149 aa11.81□□□□□ -0.52
NEK9-205ENST00000555405 CALM3P0DP25 149 aa11.81□□□□□ -0.52
NEK9-205ENST00000555405 FKBP1CQ5VVH2 108 aa11.81□□□□□ -0.52
NEK9-205ENST00000555405 TAL1P17542 331 aaPredicted RBP11.81□□□□□ -0.52
NEK9-205ENST00000555405 KIFC2Q96AC6 838 aa11.81□□□□□ -0.52
NEK9-205ENST00000555405 POLR2AP24928 1970 aaKnown RBP11.81□□□□□ -0.52
NEK9-205ENST00000555405 ASNSP08243 561 aa11.81□□□□□ -0.52
NEK9-205ENST00000555405 ZSCAN22P10073 491 aaPredicted RBP11.81□□□□□ -0.52
NEK9-205ENST00000555405 TATDN1Q6P1N9 297 aa11.81□□□□□ -0.52
NEK9-205ENST00000555405 ELP3Q9H9T3 547 aa11.81□□□□□ -0.52
NEK9-205ENST00000555405 DDAH1O94760 285 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 NLRP5P59047 1200 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 FAM83BQ5T0W9 1011 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 PIGSQ96S52 555 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 GZF1Q9H116 711 aaPredicted RBP11.8□□□□□ -0.52
NEK9-205ENST00000555405 MTMR6Q9Y217 621 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.8□□□□□ -0.52
NEK9-205ENST00000555405 NDUFB10O96000 172 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 PDHBP11177 359 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 DNM1Q05193 864 aaKnown RBP11.8□□□□□ -0.52
NEK9-205ENST00000555405 USH1GQ495M9 461 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 KRT40Q6A162 431 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 TMTC3Q6ZXV5 915 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 CPXCR1Q8N123 301 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 COA7Q96BR5 231 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 CDCA5Q96FF9 252 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 OTUD5Q96G74 571 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 CLMNQ96JQ2 1002 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 TANGO6Q9C0B7 1094 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 SEC63Q9UGP8 760 aaKnown RBP11.8□□□□□ -0.52
NEK9-205ENST00000555405 CSADQ9Y600 493 aa11.8□□□□□ -0.52
NEK9-205ENST00000555405 ROBO3Q96MS0 1386 aa11.79□□□□□ -0.52
NEK9-205ENST00000555405 POTECB2RU33 542 aa11.79□□□□□ -0.52
NEK9-205ENST00000555405 PRPF40AO75400 957 aaKnown RBP11.79□□□□□ -0.52
NEK9-205ENST00000555405 NPM3O75607 178 aaKnown RBP11.79□□□□□ -0.52
NEK9-205ENST00000555405 IFNAR1P17181 557 aa11.79□□□□□ -0.52
NEK9-205ENST00000555405 PAXIP1Q6ZW49 1069 aaPredicted RBP11.79□□□□□ -0.52
NEK9-205ENST00000555405 USP50Q70EL3 339 aaPredicted RBP11.79□□□□□ -0.52
NEK9-205ENST00000555405 LLPHQ9BRT6 129 aaKnown RBP11.79□□□□□ -0.52
NEK9-205ENST00000555405 FBXO28Q9NVF7 368 aa11.79□□□□□ -0.52
NEK9-205ENST00000555405 RBM28Q9NW13 759 aaKnown RBP11.79□□□□□ -0.52
NEK9-205ENST00000555405 CTDP1Q9Y5B0 961 aaPredicted RBP11.79□□□□□ -0.52
NEK9-205ENST00000555405 MTMR2Q13614 643 aa11.79□□□□□ -0.52
NEK9-205ENST00000555405 SAFBQ15424 915 aaKnown RBP eCLIP11.79□□□□□ -0.52
NEK9-205ENST00000555405 NTRK3Q16288 839 aa11.79□□□□□ -0.52
NEK9-205ENST00000555405 CCDC174Q6PII3 467 aa11.79□□□□□ -0.52
NEK9-205ENST00000555405 SIAH1Q8IUQ4 282 aa11.79□□□□□ -0.52
NEK9-205ENST00000555405 GBP4Q96PP9 640 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms