RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 SMARCA1P28370 1054 aa10.3□□□□□ -0.76
TDP1-210ENST00000554976 PRELPP51888 382 aa10.3□□□□□ -0.76
TDP1-210ENST00000554976 PICALMQ13492 652 aa10.3□□□□□ -0.76
TDP1-210ENST00000554976 HSP90AA2PQ14568 343 aaPredicted RBP10.3□□□□□ -0.76
TDP1-210ENST00000554976 FMR1NBQ8N0W7 255 aaPredicted RBP10.3□□□□□ -0.76
TDP1-210ENST00000554976 KAT14Q9H8E8 782 aa10.3□□□□□ -0.76
TDP1-210ENST00000554976 MTMR4Q9NYA4 1195 aa10.3□□□□□ -0.76
TDP1-210ENST00000554976 HPSEQ9Y251 543 aa10.3□□□□□ -0.76
TDP1-210ENST00000554976 PHIPQ8WWQ0 1821 aa10.29□□□□□ -0.76
TDP1-210ENST00000554976 ZBTB7AO95365 584 aa10.29□□□□□ -0.76
TDP1-210ENST00000554976 DIS3L2Q8IYB7 885 aaKnown RBP10.29□□□□□ -0.76
TDP1-210ENST00000554976 ZNF444Q8N0Y2 327 aaPredicted RBP10.29□□□□□ -0.76
TDP1-210ENST00000554976 SH3GLB2Q9NR46 395 aa10.29□□□□□ -0.76
TDP1-210ENST00000554976 NFKBIEO00221 500 aa10.29□□□□□ -0.76
TDP1-210ENST00000554976 PSMD14O00487 310 aa10.29□□□□□ -0.76
TDP1-210ENST00000554976 SLURP2P0DP57 97 aa10.29□□□□□ -0.76
TDP1-210ENST00000554976 NR5A1Q13285 461 aa10.29□□□□□ -0.76
TDP1-210ENST00000554976 SOGA3Q5TF21 947 aa10.29□□□□□ -0.76
TDP1-210ENST00000554976 KCNG4Q8TDN1 519 aa10.29□□□□□ -0.76
TDP1-210ENST00000554976 SPZ1Q9BXG8 430 aa10.29□□□□□ -0.76
TDP1-210ENST00000554976 ZNF277Q9NRM2 450 aaPredicted RBP10.29□□□□□ -0.76
TDP1-210ENST00000554976 DDX19AQ9NUU7 478 aaKnown RBP10.29□□□□□ -0.76
TDP1-210ENST00000554976 DACT1Q9NYF0 836 aa10.29□□□□□ -0.76
TDP1-210ENST00000554976 VPS54Q9P1Q0 977 aa10.29□□□□□ -0.76
TDP1-210ENST00000554976 SERPINB13Q9UIV8 391 aa10.29□□□□□ -0.76
TDP1-210ENST00000554976 V9GY48 417 aaPredicted RBP10.29□□□□□ -0.76
TDP1-210ENST00000554976 WNT7AO00755 349 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 TOP1P11387 765 aaKnown RBP10.28□□□□□ -0.76
TDP1-210ENST00000554976 SCG2P13521 617 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 SF3A1Q15459 793 aaKnown RBP10.28□□□□□ -0.76
TDP1-210ENST00000554976 TYW1BQ6NUM6 668 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 DAGLBQ8NCG7 672 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 CTCFLQ8NI51 663 aaPredicted RBP10.28□□□□□ -0.76
TDP1-210ENST00000554976 PIM2Q9P1W9 311 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 SPDYE2BA6NHP3 402 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 SPTLC2O15270 562 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 ENTPD3O75355 529 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 SPDYE6P0CI01 402 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 CEBPZQ03701 1054 aaKnown RBP10.28□□□□□ -0.76
TDP1-210ENST00000554976 CFAP100Q494V2 611 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 NOM1Q5C9Z4 860 aaKnown RBP10.28□□□□□ -0.76
TDP1-210ENST00000554976 SIAH1Q8IUQ4 282 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 CCAR1Q8IX12 1150 aaKnown RBP10.28□□□□□ -0.76
TDP1-210ENST00000554976 PRMT6Q96LA8 375 aaPredicted RBP10.28□□□□□ -0.76
TDP1-210ENST00000554976 PPP1R9BQ96SB3 815 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 DHX36Q9H2U1 1008 aaKnown RBP10.28□□□□□ -0.76
TDP1-210ENST00000554976 TSPY26PQ9H489 355 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 DOCK1Q14185 1865 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 A0A0U1RQG5 324 aaPredicted RBP10.28□□□□□ -0.76
TDP1-210ENST00000554976 hCG_1642624A0A1W2PR95 340 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 FAM205CA6NFA0 338 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 KIF5BP33176 963 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 CACNB3P54284 484 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 SHC4Q6S5L8 630 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 FAM177A1Q8N128 213 aaPredicted RBP10.28□□□□□ -0.76
TDP1-210ENST00000554976 CCDC82Q8N4S0 544 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 UPF1Q92900 1129 aaKnown RBP eCLIP10.28□□□□□ -0.76
TDP1-210ENST00000554976 PDLIM2Q96JY6 352 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 RIOX1Q9H6W3 641 aa10.28□□□□□ -0.76
TDP1-210ENST00000554976 RBBP6Q7Z6E9 1792 aaKnown RBP10.27□□□□□ -0.76
TDP1-210ENST00000554976 G3V3G9 751 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 PDHBP11177 359 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 FAM160A1Q05DH4 1040 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 RRP1BQ14684 758 aaKnown RBP10.27□□□□□ -0.77
TDP1-210ENST00000554976 DCAF8Q5TAQ9 597 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 FBXO2Q9UK22 296 aaPredicted RBP10.27□□□□□ -0.77
TDP1-210ENST00000554976 CD2APQ9Y5K6 639 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 STXBP3O00186 592 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 JAG1P78504 1218 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 TRIM29Q14134 588 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 SHROOM1Q2M3G4 852 aaPredicted RBP10.27□□□□□ -0.77
TDP1-210ENST00000554976 RESP18Q5W5W9 173 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 MKL1Q969V6 931 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 LZTS2Q9BRK4 669 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 ZNRF3Q9ULT6 936 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 MRVI1Q9Y6F6 885 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 LOC285556D6RIA3 1793 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 WDR90Q96KV7 1748 aa10.27□□□□□ -0.77
TDP1-210ENST00000554976 KRT2P35908 639 aa10.26□□□□□ -0.77
TDP1-210ENST00000554976 NDUFA8P51970 172 aa10.26□□□□□ -0.77
TDP1-210ENST00000554976 SPDYE2Q495Y8 402 aa10.26□□□□□ -0.77
TDP1-210ENST00000554976 WWC2Q6AWC2 1192 aa10.26□□□□□ -0.77
TDP1-210ENST00000554976 AGBL3Q8NEM8 1001 aa10.26□□□□□ -0.77
TDP1-210ENST00000554976 MTMR8Q96EF0 704 aa10.26□□□□□ -0.77
TDP1-210ENST00000554976 NUP62CLQ9H1M0 184 aa10.26□□□□□ -0.77
TDP1-210ENST00000554976 ATF5Q9Y2D1 282 aaPredicted RBP10.26□□□□□ -0.77
TDP1-210ENST00000554976 PCDHB6Q9Y5E3 794 aa10.26□□□□□ -0.77
TDP1-210ENST00000554976 CMA1P23946 247 aa10.26□□□□□ -0.77
TDP1-210ENST00000554976 RILPL1Q5EBL4 403 aa10.26□□□□□ -0.77
TDP1-210ENST00000554976 CLEC10AQ8IUN9 316 aa10.26□□□□□ -0.77
TDP1-210ENST00000554976 MRPS27Q92552 414 aaKnown RBP10.26□□□□□ -0.77
TDP1-210ENST00000554976 TDRD3Q9H7E2 651 aaKnown RBP10.26□□□□□ -0.77
TDP1-210ENST00000554976 GOLGB1Q14789 3259 aaKnown RBP10.26□□□□□ -0.77
TDP1-210ENST00000554976 USP17L5A8MUK1 530 aa10.25□□□□□ -0.77
TDP1-210ENST00000554976 GNAQP50148 359 aa10.25□□□□□ -0.77
TDP1-210ENST00000554976 MAP3K10Q02779 954 aa10.25□□□□□ -0.77
TDP1-210ENST00000554976 DALRD3Q5D0E6 543 aaKnown RBP10.25□□□□□ -0.77
TDP1-210ENST00000554976 BARHL2Q9NY43 387 aa10.25□□□□□ -0.77
TDP1-210ENST00000554976 BAZ2BQ9UIF8 2168 aaKnown RBP10.25□□□□□ -0.77
TDP1-210ENST00000554976 MYH7BA7E2Y1 1941 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms