RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 IL17RBQ9NRM6 502 aa14.67□□□□□ -0.06
SYNE2-214ENST00000554928 PLIN4Q96Q06 1357 aa14.67□□□□□ -0.06
SYNE2-214ENST00000554928 ORC4O43929 436 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 RANBP6O60518 1105 aaKnown RBP14.66□□□□□ -0.06
SYNE2-214ENST00000554928 SLC3A2P08195 630 aaKnown RBP14.66□□□□□ -0.06
SYNE2-214ENST00000554928 TSPY3P0CV98 308 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 TSPY8P0CW00 308 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 OSBPP22059 807 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 USP14P54578 494 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 LACTBP83111 547 aaPredicted RBP14.66□□□□□ -0.06
SYNE2-214ENST00000554928 CATSPERGQ6ZRH7 1159 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 LRRC47Q8N1G4 583 aaKnown RBP14.66□□□□□ -0.06
SYNE2-214ENST00000554928 SMCR8Q8TEV9 937 aaPredicted RBP14.66□□□□□ -0.06
SYNE2-214ENST00000554928 CHMP4CQ96CF2 233 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 NUP88Q99567 741 aaPredicted RBP14.66□□□□□ -0.06
SYNE2-214ENST00000554928 ESYT1Q9BSJ8 1104 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 VCPKMTQ9H867 229 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 ARHGEF10LQ9HCE6 1279 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 TOMM22Q9NS69 142 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 MTMR4Q9NYA4 1195 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 CLIP2Q9UDT6 1046 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 TRIM17Q9Y577 477 aa14.66□□□□□ -0.06
SYNE2-214ENST00000554928 USP17L15C9J2P7 530 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 USP17L13C9JLJ4 530 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 USP17L11C9JVI0 530 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 USP17L18D6R9N7 530 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 USP17L22D6RA61 530 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 USP17L17D6RBQ6 530 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 USP17L19D6RCP7 530 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 USP17L20D6RJB6 530 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 CNMDO75829 334 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 HERVK_113P62684 666 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 IRX3P78415 501 aaPredicted RBP14.65□□□□□ -0.06
SYNE2-214ENST00000554928 USP17L24Q0WX57 530 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 AKNAD1Q5T1N1 836 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 STAG1Q8WVM7 1258 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 RUFY2Q8WXA3 655 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 ERO1AQ96HE7 468 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 TRIM47Q96LD4 638 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 NYAP2Q9P242 653 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 RBPJLQ9UBG7 517 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 PNMA3Q9UL41 463 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 HTTP42858 3142 aa14.65□□□□□ -0.06
SYNE2-214ENST00000554928 TSPY2A6NKD2 308 aa14.64□□□□□ -0.07
SYNE2-214ENST00000554928 ZNF213O14771 459 aa14.64□□□□□ -0.07
SYNE2-214ENST00000554928 RAD21O60216 631 aa14.64□□□□□ -0.07
SYNE2-214ENST00000554928 NDUFB10O96000 172 aa14.64□□□□□ -0.07
SYNE2-214ENST00000554928 PABPC4Q13310 644 aaKnown RBP eCLIP14.64□□□□□ -0.07
SYNE2-214ENST00000554928 Q3C1V9 767 aa14.64□□□□□ -0.07
SYNE2-214ENST00000554928 LSG1Q9H089 658 aaKnown RBP14.64□□□□□ -0.07
SYNE2-214ENST00000554928 EFCC1Q9HA90 598 aa14.64□□□□□ -0.07
SYNE2-214ENST00000554928 ZNF287Q9HBT7 754 aa14.64□□□□□ -0.07
SYNE2-214ENST00000554928 FBXO28Q9NVF7 368 aa14.64□□□□□ -0.07
SYNE2-214ENST00000554928 SPDYE16A6NNV3 312 aaPredicted RBP14.63□□□□□ -0.07
SYNE2-214ENST00000554928 CYP21A2P08686 494 aa14.63□□□□□ -0.07
SYNE2-214ENST00000554928 PSMC4P43686 418 aa14.63□□□□□ -0.07
SYNE2-214ENST00000554928 COL9A3Q14050 684 aaPredicted RBP14.63□□□□□ -0.07
SYNE2-214ENST00000554928 FAM83BQ5T0W9 1011 aa14.63□□□□□ -0.07
SYNE2-214ENST00000554928 MFSD6Q6ZSS7 791 aa14.63□□□□□ -0.07
SYNE2-214ENST00000554928 STOX1Q6ZVD7 989 aa14.63□□□□□ -0.07
SYNE2-214ENST00000554928 ZKSCAN3Q9BRR0 538 aa14.63□□□□□ -0.07
SYNE2-214ENST00000554928 PAGR1Q9BTK6 254 aa14.63□□□□□ -0.07
SYNE2-214ENST00000554928 TANGO6Q9C0B7 1094 aa14.63□□□□□ -0.07
SYNE2-214ENST00000554928 BTBD7Q9P203 1132 aa14.63□□□□□ -0.07
SYNE2-214ENST00000554928 B4E1Z4 1266 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 F5H6K3 240 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 TTLL1O95922 423 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 NOVP48745 357 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 KLRC3Q07444 240 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 IMMTQ16891 758 aaKnown RBP14.62□□□□□ -0.07
SYNE2-214ENST00000554928 FAM110CQ1W6H9 321 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 MAP4K1Q92918 833 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 MKL1Q969V6 931 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 ATG4CQ96DT6 458 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 ABHD8Q96I13 439 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 SH2D4AQ9H788 454 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 MORF4L1Q9UBU8 362 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 GABRQQ9UN88 632 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 RBM8AQ9Y5S9 174 aaKnown RBP14.62□□□□□ -0.07
SYNE2-214ENST00000554928 LAMA4Q16363 1823 aa14.62□□□□□ -0.07
SYNE2-214ENST00000554928 WDR46O15213 610 aaKnown RBP14.61□□□□□ -0.07
SYNE2-214ENST00000554928 KDM4AO75164 1064 aa14.61□□□□□ -0.07
SYNE2-214ENST00000554928 CDC45O75419 566 aa14.61□□□□□ -0.07
SYNE2-214ENST00000554928 GCLCP48506 637 aaPredicted RBP14.61□□□□□ -0.07
SYNE2-214ENST00000554928 MKRN4PQ13434 485 aaPredicted RBP14.61□□□□□ -0.07
SYNE2-214ENST00000554928 RCSD1Q6JBY9 416 aa14.61□□□□□ -0.07
SYNE2-214ENST00000554928 LPAR1Q92633 364 aa14.61□□□□□ -0.07
SYNE2-214ENST00000554928 PORCNQ9H237 461 aa14.61□□□□□ -0.07
SYNE2-214ENST00000554928 GOPCQ9HD26 462 aa14.61□□□□□ -0.07
SYNE2-214ENST00000554928 CTNNA3Q9UI47 895 aa14.61□□□□□ -0.07
SYNE2-214ENST00000554928 STX8Q9UNK0 236 aa14.61□□□□□ -0.07
SYNE2-214ENST00000554928 PTPN22Q9Y2R2 807 aa14.61□□□□□ -0.07
SYNE2-214ENST00000554928 PTCH2Q9Y6C5 1203 aa14.61□□□□□ -0.07
SYNE2-214ENST00000554928 RLFQ13129 1914 aa14.6□□□□□ -0.07
SYNE2-214ENST00000554928 FLOT1O75955 427 aa14.6□□□□□ -0.07
SYNE2-214ENST00000554928 FMNL1O95466 1100 aaPredicted RBP14.6□□□□□ -0.07
SYNE2-214ENST00000554928 ERVK-9P63128 1117 aa14.6□□□□□ -0.07
SYNE2-214ENST00000554928 ERVK-24P63145 666 aa14.6□□□□□ -0.07
SYNE2-214ENST00000554928 SLFN13Q68D06 897 aa14.6□□□□□ -0.07
SYNE2-214ENST00000554928 FBXO46Q6PJ61 603 aaPredicted RBP14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms