RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 LRRC2Q9BYS8 371 aa14.38□□□□□ -0.11
SHMT2-209ENST00000553949 GPHNQ9NQX3 736 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-209ENST00000553949 SYNPO2Q9UMS6 1093 aa14.38□□□□□ -0.11
SHMT2-209ENST00000553949 MYH8P13535 1937 aa14.38□□□□□ -0.11
SHMT2-209ENST00000553949 ATAD5Q96QE3 1844 aa14.38□□□□□ -0.11
SHMT2-209ENST00000553949 VEGFBP49765 207 aa14.37□□□□□ -0.11
SHMT2-209ENST00000553949 HMGCS2P54868 508 aa14.37□□□□□ -0.11
SHMT2-209ENST00000553949 NOGQ13253 232 aa14.37□□□□□ -0.11
SHMT2-209ENST00000553949 DGKZQ13574 1117 aa14.37□□□□□ -0.11
SHMT2-209ENST00000553949 WTAPQ15007 396 aa14.37□□□□□ -0.11
SHMT2-209ENST00000553949 ZYXQ15942 572 aaKnown RBP14.37□□□□□ -0.11
SHMT2-209ENST00000553949 SH3D19Q5HYK7 790 aa14.37□□□□□ -0.11
SHMT2-209ENST00000553949 USP17L2Q6R6M4 530 aa14.37□□□□□ -0.11
SHMT2-209ENST00000553949 VCPKMTQ9H867 229 aa14.37□□□□□ -0.11
SHMT2-209ENST00000553949 LY9Q9HBG7 655 aa14.37□□□□□ -0.11
SHMT2-209ENST00000553949 SENP2Q9HC62 589 aa14.37□□□□□ -0.11
SHMT2-209ENST00000553949 GOPCQ9HD26 462 aa14.37□□□□□ -0.11
SHMT2-209ENST00000553949 EMILIN3Q9NT22 766 aa14.37□□□□□ -0.11
SHMT2-209ENST00000553949 TMOD4Q9NZQ9 345 aa14.37□□□□□ -0.11
SHMT2-209ENST00000553949 WDR33Q9C0J8 1336 aaKnown RBP14.37□□□□□ -0.11
SHMT2-209ENST00000553949 CCL15-CCL14A0A0B4J2E2 113 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 MANSC4A6NHS7 340 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-209ENST00000553949 F5H6K3 240 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 AOC2O75106 756 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 CETPP11597 493 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 LIFRP42702 1097 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 FGD1P98174 961 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 KLRC3Q07444 240 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 MOGSQ13724 837 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 CCL15Q16663 113 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 KIAA1755Q5JYT7 1200 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 Q6ZUG5 572 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 GMCL1P1Q8NEA9 526 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 BRI3BPQ8WY22 251 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 C12orf42Q96LP6 360 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 ZIC5Q96T25 663 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 KAT14Q9H8E8 782 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 PDRG1Q9NUG6 133 aa14.36□□□□□ -0.11
SHMT2-209ENST00000553949 TESPA1A2RU30 521 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-209ENST00000553949 RAD21O60216 631 aa14.35□□□□□ -0.11
SHMT2-209ENST00000553949 NDUFB10O96000 172 aa14.35□□□□□ -0.11
SHMT2-209ENST00000553949 KIF23Q02241 960 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-209ENST00000553949 SLFN13Q68D06 897 aa14.35□□□□□ -0.11
SHMT2-209ENST00000553949 GADL1Q6ZQY3 521 aa14.35□□□□□ -0.11
SHMT2-209ENST00000553949 FASTKD5Q7L8L6 764 aaKnown RBP14.35□□□□□ -0.11
SHMT2-209ENST00000553949 SPICE1Q8N0Z3 855 aa14.35□□□□□ -0.11
SHMT2-209ENST00000553949 TMTC2Q8N394 836 aa14.35□□□□□ -0.11
SHMT2-209ENST00000553949 FBXL16Q8N461 479 aa14.35□□□□□ -0.11
SHMT2-209ENST00000553949 PROCA1Q8NCQ7 364 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-209ENST00000553949 PNMA1Q8ND90 353 aa14.35□□□□□ -0.11
SHMT2-209ENST00000553949 LPAR1Q92633 364 aa14.35□□□□□ -0.11
SHMT2-209ENST00000553949 PHIPQ8WWQ0 1821 aa14.35□□□□□ -0.11
SHMT2-209ENST00000553949 VCAM1P19320 739 aa14.34□□□□□ -0.11
SHMT2-209ENST00000553949 NEK4P51957 841 aa14.34□□□□□ -0.11
SHMT2-209ENST00000553949 SREBF2Q12772 1141 aa14.34□□□□□ -0.11
SHMT2-209ENST00000553949 RABEP1Q15276 862 aa14.34□□□□□ -0.11
SHMT2-209ENST00000553949 NFXL1Q6ZNB6 911 aa14.34□□□□□ -0.11
SHMT2-209ENST00000553949 SGMS1Q86VZ5 419 aa14.34□□□□□ -0.11
SHMT2-209ENST00000553949 AGXT2Q9BYV1 514 aa14.34□□□□□ -0.11
SHMT2-209ENST00000553949 MTMR7Q9Y216 660 aa14.34□□□□□ -0.11
SHMT2-209ENST00000553949 CCDC69A6NI79 296 aa14.33□□□□□ -0.12
SHMT2-209ENST00000553949 WDR46O15213 610 aaKnown RBP14.33□□□□□ -0.12
SHMT2-209ENST00000553949 MAP2K2P36507 400 aa14.33□□□□□ -0.12
SHMT2-209ENST00000553949 INHBEP58166 350 aa14.33□□□□□ -0.12
SHMT2-209ENST00000553949 TOB2Q14106 344 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-209ENST00000553949 TREML2Q5T2D2 321 aa14.33□□□□□ -0.12
SHMT2-209ENST00000553949 GPAT2Q6NUI2 795 aa14.33□□□□□ -0.12
SHMT2-209ENST00000553949 CATIPQ7Z7H3 387 aa14.33□□□□□ -0.12
SHMT2-209ENST00000553949 REM2Q8IYK8 340 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-209ENST00000553949 BRF1Q92994 677 aa14.33□□□□□ -0.12
SHMT2-209ENST00000553949 CHMP4CQ96CF2 233 aa14.33□□□□□ -0.12
SHMT2-209ENST00000553949 GMCL1Q96IK5 515 aa14.33□□□□□ -0.12
SHMT2-209ENST00000553949 NUP88Q99567 741 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-209ENST00000553949 PTPN18Q99952 460 aa14.33□□□□□ -0.12
SHMT2-209ENST00000553949 ALDH8A1Q9H2A2 487 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-209ENST00000553949 AGTPBP1Q9UPW5 1226 aa14.33□□□□□ -0.12
SHMT2-209ENST00000553949 SLC12A7Q9Y666 1083 aa14.33□□□□□ -0.12
SHMT2-209ENST00000553949 BTBD19C9JJ37 291 aa14.32□□□□□ -0.12
SHMT2-209ENST00000553949 PDHBP11177 359 aa14.32□□□□□ -0.12
SHMT2-209ENST00000553949 SLC1A4P43007 532 aa14.32□□□□□ -0.12
SHMT2-209ENST00000553949 TM4SF4P48230 202 aa14.32□□□□□ -0.12
SHMT2-209ENST00000553949 RASGRP2Q7LDG7 609 aa14.32□□□□□ -0.12
SHMT2-209ENST00000553949 ANKRD23Q86SG2 305 aa14.32□□□□□ -0.12
SHMT2-209ENST00000553949 ZNF654Q8IZM8 581 aa14.32□□□□□ -0.12
SHMT2-209ENST00000553949 FAM43AQ8N2R8 423 aa14.32□□□□□ -0.12
SHMT2-209ENST00000553949 DCAF4Q8WV16 495 aa14.32□□□□□ -0.12
SHMT2-209ENST00000553949 RPAP3Q9H6T3 665 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-209ENST00000553949 BRPF3Q9ULD4 1205 aa14.32□□□□□ -0.12
SHMT2-209ENST00000553949 KLF18A0A0U1RQI7 1052 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 USP17L15C9J2P7 530 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 USP17L13C9JLJ4 530 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 USP17L11C9JVI0 530 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 USP17L18D6R9N7 530 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 USP17L22D6RA61 530 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 USP17L17D6RBQ6 530 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 USP17L19D6RCP7 530 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 USP17L20D6RJB6 530 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 IGF2BP3O00425 579 aaKnown RBP eCLIP14.31□□□□□ -0.12
SHMT2-209ENST00000553949 DDAH1O94760 285 aa14.31□□□□□ -0.12
SHMT2-209ENST00000553949 SNHG28P0DPA3 235 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms